SRR6576842_2.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6576842_2.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	521204
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACCTAAGACAGACTATGATAACTTTCTTATGGCTCATCTCATTAACGAAA	1982	0.38027336705013776	No Hit
GTCTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTC	1641	0.3148479290258709	No Hit
CTATTATCCTGGCCTCTGACAAAAGAGAAAAGATAGAAGATAATGGCAAC	1220	0.2340734146322745	No Hit
ATCCTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAG	648	0.12432751859156874	No Hit
GAATTTATACTGGGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTC	648	0.12432751859156874	No Hit
GTGTAGCCACGATCACAAGAAAGACGTGGTCCTGACAGACAGACAATCCT	602	0.11550179967920429	No Hit
CTATTATCCTGGCCTCTGACAAGAGAGAAAAGATAGAAGATAATGGCAAC	578	0.11089707676840548	No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG	555	0.10648421731222324	No Hit
ATCCTATTCCCTACCAAAATGAAGATGCTGCTGCTGCTGTGTTTGGGGCT	532	0.10207135785604102	No Hit
TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT	526	0.1009201771283413	No Hit
ATCTATGGTTGCTGACAAAACAGAAAAGGCTGGTGAATATTCTGTGACGT	522	0.10015272330987483	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAACGC	25	0.0052375486	56.391537	3
GGTATCA	305	0.0	52.45604	1
GTATCAA	1045	0.0	46.380707	1
AGGGTAA	225	0.0	41.77151	6
ATCAACG	1125	0.0	40.93608	3
TCAACGC	1140	0.0	40.397446	4
GGTAATC	220	0.0	38.474617	8
CAACGCA	1190	0.0	38.305176	5
AACGCAG	1240	0.0	37.139587	6
TATCAAC	1310	0.0	35.87248	2
AAGGGTA	240	0.0	35.24471	5
GGTACCT	220	0.0	34.19966	8
TTAGGTA	490	0.0	33.566395	4
TATACCG	85	1.75475E-5	33.171494	4
GTCTTAG	570	0.0	33.021862	1
TAGGTAT	515	0.0	31.936954	5
GTAATCA	290	0.0	30.809175	9
AGGTATA	545	0.0	30.178959	6
GTACATG	1755	0.0	30.030136	1
CTTAGGT	535	0.0	29.86468	3