SRR6576504_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6576504_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	121330
Sequences flagged as poor quality	0
Sequence length	100
%GC	48

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG	451	0.371713508612874	No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA	266	0.21923679221956646	No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA	242	0.19945602901178605	No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA	237	0.1953350366768318	No Hit
GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCGCGGGA	230	0.18956564740789583	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	228	0.1879172504739141	No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG	222	0.182972059671969	No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT	201	0.16566389186516114	No Hit
GCTAAGAGCATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGACGGGCGGT	198	0.1631912964641886	No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC	184	0.15165251792631665	No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCCTTCCCGGGGGGG	172	0.14176213632242646	No Hit
CCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACAGG	172	0.14176213632242646	No Hit
GTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTG	171	0.1409379378554356	No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCCTTCCCGGGGGGGGATGCG	171	0.1409379378554356	No Hit
AGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTC	159	0.13104755625154538	No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG	149	0.12280557158163687	No Hit
GTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATAT	148	0.12198137311464602	No Hit
GCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGC	146	0.12033297618066431	No Hit
GATTTAAAGTGGACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTAT	142	0.1170361823127009	No Hit
GGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCAT	137	0.11291518997774665	No Hit
AGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGG	134	0.11044259457677408	No Hit
ACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACG	131	0.10796999917580152	No Hit
GAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAA	130	0.10714580070881068	No Hit
CTATTAACCCTTGGCCTACTCACCAATATCCTCACAATATATCAATGATG	130	0.10714580070881068	No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC	130	0.10714580070881068	No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT	124	0.10220060990686558	No Hit
GATCAAAACCAACCCGGTGAGCTCCCTCCCGGCTCCGGCCGGGGGTCGGG	122	0.10055221297288389	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	25	0.0052256957	56.397526	5
GCAAACG	25	0.0052256957	56.397526	1
GAAGTCG	25	0.0052256957	56.397526	6
ATAGCAC	40	5.6577695E-4	46.997936	3
CATGGGT	185	0.0	40.646866	4
CAATCCG	30	8.805781E-5	39.164948	90-91
ACATGGG	1125	0.0	38.85163	3
GTACATG	1130	0.0	38.679718	1
CATGGGG	335	0.0	37.878937	4
TACATGG	1145	0.0	37.76254	2
TATTTCG	50	0.0016963986	37.59835	5
CGTAAAT	25	0.0016997482	37.59835	34-35
TAAATCT	50	0.0016963986	37.59835	94
ATACATA	50	0.0016963986	37.59835	3
CTGGACT	50	0.0016963986	37.59835	4
GGAGTCT	65	1.4064141E-4	36.15226	6
GTATCAA	705	0.0	35.99842	1
ATATAGA	105	5.0498784E-8	35.807953	1
ATGGGTA	120	4.143658E-9	35.24845	5
CATGGGC	240	0.0	35.24845	4

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content