FastQCFastQC Report
Sun 14 Apr 2019
SRR6576126_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6576126_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1084354
Sequences flagged as poor quality0
Sequence length100
%GC50

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA16350.060.6665761
GGTATCA5400.047.009411
ATCAACG21550.045.7990723
TCAACGC22150.045.1950154
CAACGCA22500.044.4919785
AACGCAG23200.043.554716
TATCAAC25400.038.6809732
ACGCAGA29800.033.5929377
CGCAGAG31800.031.036798
CTTAGGT3600.028.7213483
GCAGAGT35050.028.0248249
TACATGG39350.027.237982
GTACATG41100.027.1076161
ACATGGG41450.026.418983
AGGTATA4000.024.674256
AGAGTAC30050.024.47679110-11
TAGGTAT3900.024.1018315
GGTATAG4100.024.072447
TTAGGTA4100.022.9261344
GTCTTAG6850.022.6468681
Produced by FastQC (version 0.11.2)