SRR6576007_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6576007_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1216413
Sequences flagged as poor quality	0
Sequence length	100
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACCTAAGACAGACTATGATAACTTTCTTATGGCTCATCTCATTAACGAAA	2228	0.18316147558436158	No Hit
CTATTATCCTGGCCTCTGACAAAAGAGAAAAGATAGAAGATAATGGCAAC	2177	0.17896882062260105	No Hit
GTCTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTC	1775	0.14592083445342988	No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG	1488	0.1223268741784246	No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT	1443	0.11862747274157708	No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA	1294	0.10637834353957085	No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA	1281	0.10530962756892602	No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA	1281	0.10530962756892602	No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	1280	0.10522741864810718	No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC	1270	0.10440532943991884	No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT	1268	0.10424091159828117	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	2040	0.0	59.202187	1
TAGTGCG	25	0.0052416804	56.384857	5
GGTATCA	780	0.0	51.812984	1
ATCAACG	2835	0.0	41.60082	3
TCAACGC	2855	0.0	41.473976	4
CAACGCA	2900	0.0	40.668385	5
AACGCAG	3020	0.0	39.052425	6
ACGTCGA	25	0.0017046477	37.589905	68-69
GTCTTAG	785	0.0	35.31971	1
TATCAAC	3420	0.0	34.901363	2
ACGCAGA	3610	0.0	32.539738	7
TAGGTAT	675	0.0	31.324923	5
CTTAGGT	670	0.0	30.857384	3
AGGTATA	675	0.0	30.628813	6
TTAGGTA	695	0.0	30.423483	4
GTACATG	4980	0.0	30.00769	1
CGCAGAG	3970	0.0	29.707388	8
TACATGG	5095	0.0	29.145914	2
ACATGGG	5230	0.0	28.39008	3
GCAGAGT	4395	0.0	27.04848	9