SRR6576006_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6576006_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1369848
Sequences flagged as poor quality	0
Sequence length	100
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTATTATCCTGGCCTCTGACAAAAGAGAAAAGATAGAAGATAATGGCAAC	2407	0.17571292581366693	No Hit
ACCTAAGACAGACTATGATAACTTTCTTATGGCTCATCTCATTAACGAAA	2292	0.1673178338034585	No Hit
GTCTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTC	1808	0.13198544656049432	No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG	1675	0.12227634014868805	No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT	1559	0.11380824733839083	No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC	1469	0.10723817533040163	No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	1436	0.10482914892747225	No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA	1424	0.10395313932640701	No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA	1407	0.10271212572489795	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	2145	0.0	58.951614	1
GGTATCA	725	0.0	51.870773	1
TCAACGC	2800	0.0	44.312016	4
ATCAACG	2825	0.0	44.086235	3
CAACGCA	2890	0.0	43.257298	5
AACGCAG	2970	0.0	41.933876	6
TCTAACG	60	8.81625E-5	39.173237	2
CTAACGC	50	0.0017025698	37.598072	3
TATCAAC	3440	0.0	36.622425	2
ACGCAGA	3820	0.0	32.480007	7
TTAGGTA	565	0.0	32.44082	4
GTACATG	5470	0.0	32.39849	1
TACATGG	5655	0.0	31.006084	2
TAGGTAT	625	0.0	30.078457	5
ACATGGG	5785	0.0	29.97772	3
CTTAGGT	615	0.0	29.803352	3
CGCAGAG	4240	0.0	29.262651	8
GTCTTAG	735	0.0	28.140774	1
ACCTAAG	1015	0.0	27.787914	1
GCAGAGT	4580	0.0	27.090313	9