SRR6575430_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6575430_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	832867
Sequences flagged as poor quality	0
Sequence length	100
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACCTAAGACAGACTATGATAACTTTCTTATGGCTCATCTCATTAACGAAA	3586	0.430560941903089	No Hit
GTCTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTC	2459	0.2952452192246781	No Hit
CTATTATCCTGGCCTCTGACAAAAGAGAAAAGATAGAAGATAATGGCAAC	2198	0.2639076827392609	No Hit
GAATTTATACTGGGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTC	1436	0.17241648426459447	No Hit
CTATTATCCTGGCCTCTGACAAGAGAGAAAAGATAGAAGATAATGGCAAC	1290	0.15488667458309668	No Hit
ATCCTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAG	1280	0.1536860026871037	No Hit
GTGCAAGGGTAATCATTTATTGAACAGGAAGAGGAAGAAATTCATGAAAA	1015	0.12186819744328925	No Hit
ATCCTATTCCCTACCAAAATGAAGATGCTGCTGCTGCTGTGTTTGGGGCT	976	0.11718557704891658	No Hit
CATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCA	959	0.11514443482572848	No Hit
ATCTATGGTTGCTGACAAAACAGAAAAGGCTGGTGAATATTCTGTGACGT	910	0.10926114253536279	No Hit
ACCCTAGTGTGTGTCCATGCAGAAGAAGCTAGTTCTACGGGAAGGAACTT	848	0.10181697678020621	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	360	0.0	52.227325	1
GTATCAA	1670	0.0	50.9451	1
TCAACGC	1770	0.0	46.722195	4
ATCAACG	1855	0.0	44.581287	3
CAACGCA	1910	0.0	43.297535	5
AACGCAG	1975	0.0	41.87255	6
TATCAAC	2105	0.0	39.747353	2
GTACATG	3210	0.0	35.582916	1
TTAGGTA	755	0.0	34.851776	4
TACATGG	3290	0.0	34.43194	2
ACATGGG	3340	0.0	34.185635	3
CTTAGGT	770	0.0	34.172844	3
TAGGTAT	765	0.0	33.78198	5
GTCTTAG	835	0.0	33.212826	1
ACGCAGA	2590	0.0	31.929842	7
CGCAGAG	2595	0.0	31.86832	8
TAGCGCA	60	0.004165678	31.32511	4
AAACGTA	30	0.004166863	31.32511	80-81
ACCAGAT	1310	0.0	30.846863	94
AGGTATA	825	0.0	30.75556	6