FastQCFastQC Report
Tue 12 Jul 2016
SRR072108_NA18507_ATAC_GENOMIC_R2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR072108_NA18507_ATAC_GENOMIC_R2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18378252
Sequences flagged as poor quality0
Sequence length36
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1672410.9099940516649788No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG16150.010.3513498
TACACTG35250.09.9495065
TTACACT30150.09.70395854
GTCTCGC17200.09.6418071
TACACCG4350.09.6064185
TAGACAG45400.09.5002435
TATACTG25500.09.4227675
CTGTCGC18900.09.4002819
GTCTTAC20050.09.1654671
GTATTAG21100.09.13421251
GTATAAG21000.09.03541851
TCTACAC25400.08.8741563
GTCTAGA25400.08.8231041
TATACCG2201.090831E-58.8188795
GTGTAGG24450.08.7381811
GTCGCCC17550.08.68415711
TAGACTG27200.08.6143695
TGTCGCC20300.08.60729310
TAATACT26250.08.586734
CTTACAC24350.08.5211773
Produced by FastQC (version 0.11.2)