FastQCFastQC Report
Wed 24 Apr 2019
SRR5517168_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5517168_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46043847
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCAGAGCCGTGTAGATCT3376760.7333792069980599Illumina Single End PCR Primer 1 (96% over 32bp)
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCAGAGCCGTGTAGATCTC2533390.5502124963624346Illumina Single End PCR Primer 1 (96% over 31bp)
CACGATCACAAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCT485880.10552550050824382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)