FastQCFastQC Report
Fri 10 Jun 2016
G95-M9_ATGTCA_L002_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameG95-M9_ATGTCA_L002_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6486443
Sequences flagged as poor quality0
Sequence length99
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGATT1902.194271E-417.1344641
CGCGACT2608.1050475E-616.0988641
CGGCAAT7651.8189894E-1212.158911
CGCAATC3852.409197E-512.0795832
CGACCGT3106.4469577E-412.002021
CCGCAAT8259.094947E-1211.2746261
CGCGTCT5851.205517E-711.1300791
CCGGCAT13050.011.0478371
GTCGAAC4651.3593901E-511.0018531
CGCCAAT8602.1827873E-1110.8157741
CACGAAC10900.010.6669341
CGAATTG5751.1590928E-610.5144893
CCGGGAT16450.010.4607281
CCGGTAT7704.671165E-910.2679621
CCGCTTT17100.010.0630981
CGCTGAT9802.5465852E-119.9659621
CGCGAGT5154.1953208E-59.9337111
CCCGATT7201.9918843E-79.6891321
GTCGCAT4359.91397E-49.622311
CCGGTCT13900.09.3684841
Produced by FastQC (version 0.11.2)