GBM22.R1.fastq.83bp.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	GBM22.R1.fastq.83bp.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2087784
Sequences flagged as poor quality	0
Sequence length	83
%GC	55

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCA	6353	0.3042939307897752	No Hit
AGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAG	5028	0.2408295110988493	No Hit
GAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG	3606	0.17271901690979527	No Hit
CTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGC	3239	0.15514057009728976	No Hit
CAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATA	2706	0.1296111091952041	No Hit
CTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTC	2653	0.12707253240756708	No Hit
GTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAA	2572	0.12319282071325385	No Hit
GTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGA	2337	0.11193686703222172	No Hit
CCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGA	2261	0.1082966437141007	No Hit
CACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTT	2203	0.10551857855027148	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGACT	25	1.4989551E-4	61.55019	1
CTCGTGA	20	0.004783905	57.70331	1
TTGCGAT	20	0.004783905	57.70331	1
CGTGATA	20	0.0047861785	57.69638	3
CGGAAAC	145	0.0	50.407486	1
TCGTGCG	145	0.0	47.746437	7
CTGTCGA	35	7.8893214E-4	43.96442	1
CTCGGTT	45	5.2729818E-5	42.74319	1
TGCCGTA	355	0.0	42.258533	2
GGCTCGT	175	0.0	41.759186	4
CCGGCAT	120	0.0	41.674606	1
CAGTTTT	880	0.0	41.52391	3
CTGCCAG	375	0.0	41.03346	1
TCAGACG	810	0.0	38.94099	2
CCGAAAG	505	0.0	38.84975	1
CGTAGGA	40	0.0015216222	38.468872	1
CTGCCGT	400	0.0	38.46887	1
AACTTAC	120	0.0	38.46241	5
CGCTTAT	60	6.373364E-6	38.46241	5
TGTTACG	385	0.0	36.965645	3