G129-M9_GATCAG_AC8VLWANXX_L007_001.R2.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	G129-M9_GATCAG_AC8VLWANXX_L007_001.R2.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20794591
Sequences flagged as poor quality	0
Sequence length	50
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	1012091	4.8670877922051945	Illumina Single End PCR Primer 1 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	124120	43.302414	12
GCGTCGT	124130	43.295696	11
GATCGGA	122015	43.217655	1
TCGTGTA	122785	43.20707	14
AGCGTCG	123035	43.19152	10
CGTGTAG	122915	43.16475	15
ATCGGAA	121445	43.084343	2
GTCGTGT	125890	43.044827	13
GATCTCG	122195	42.98188	34
TCTCGGT	123420	42.973637	36
GTCGCCG	120315	42.94297	44
GTAGGGA	120875	42.941616	18
AGAGCGT	124155	42.91633	8
GAGCGTC	123720	42.882683	9
GTAGATC	123215	42.879604	31
TGTAGGG	125425	42.839592	17
ATCTCGG	122825	42.813873	35
TGGTCGC	120740	42.760498	42
GTGGTCG	122300	42.758366	41
AAGAGCG	122760	42.638607	7