G128-M2-B_CGATGT_AC8WFRANXX_L001_001.R1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	G128-M2-B_CGATGT_AC8WFRANXX_L001_001.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12534690
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC	395275	3.1534485495851907	TruSeq Adapter, Index 2 (100% over 50bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	62402	0.49783440994551925	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14811	0.11816008214004495	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	47235	43.587112	1
ATCGGAA	47450	43.139744	2
ACACGTC	47245	42.693672	13
CGTATGC	47275	42.672424	44
ACGTCTG	47365	42.65982	15
CGTCTGA	47255	42.57291	16
TCGGAAG	48040	42.509182	3
TCGTATG	47905	42.41433	43
CGATGTA	47030	42.409424	34
CCGATGT	47135	42.409317	33
CTCGTAT	47025	42.38468	42
CACGTCT	47690	42.34604	14
TCACCGA	47430	42.345673	30
CGGAAGA	48215	42.199764	4
ACCGATG	47585	42.198494	32
CACACGT	47905	42.17435	12
TATCTCG	45360	42.160034	39
CACCGAT	47630	42.14477	31
GTCACCG	48265	42.013042	29
TCTCGTA	45695	41.94774	41