G128-M7_CAGATC_BC8GTYANXX_L001_001.R1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	G128-M7_CAGATC_BC8GTYANXX_L001_001.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12600419
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC	703482	5.58300481912546	TruSeq Adapter, Index 7 (100% over 50bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	94045	0.7463640693218218	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	69031	0.5478468612829462	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCAACTCGTATGC	17337	0.13759066265970996	TruSeq Adapter, Index 7 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCACCTCGTATGC	15768	0.12513869578464018	TruSeq Adapter, Index 7 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCAGCTCGTATGC	12651	0.10040142315902352	TruSeq Adapter, Index 7 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	91095	43.690536	1
ATCGGAA	91685	43.364353	2
CGTATGC	90830	43.209435	44
CGTCTGA	93335	43.039986	16
ACACGTC	93560	43.038273	13
ACGTCTG	93780	43.038216	15
TCGTATG	91585	42.91381	43
CTCGTAT	89030	42.86649	42
CACGTCT	94275	42.83107	14
CACACGT	93145	42.798916	12
CGGAAGA	91965	42.761337	4
TCGGAAG	93640	42.561363	3
TCTCGTA	82720	42.5503	41
CATCTCG	82515	42.163433	39
ATCTCGT	83260	42.1608	40
GAACTCC	94995	42.08975	21
ACCAGAT	92285	42.045094	32
GCACACG	94885	41.97647	11
CTGAACT	96020	41.93177	19
GATCATC	82905	41.894768	36