RXR_All_Reps_Combined.R2.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	RXR_All_Reps_Combined.R2.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	54051413
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	536569	0.9927011528819794	Illumina Single End PCR Primer 1 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	93667	0.1732924169808475	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	101650	43.048836	12
AGCGTCG	101310	43.01726	10
GCGTCGT	101650	42.984833	11
GATCGGA	102810	42.76893	1
GTCGCCG	66000	42.74781	44
ATCGGAA	102720	42.578842	2
TCGTGTA	102000	42.559795	14
GTCGTGT	103140	42.518364	13
GAGCGTC	102810	42.43677	9
CGTGTAG	102880	42.39128	15
TGGTCGC	64960	42.381042	42
GATCTCG	76255	42.311855	34
GTGGTCG	68295	42.158855	41
TCGGAAG	104615	42.070946	3
AGAGCGT	104245	42.017193	8
ATCTCGG	77745	41.90678	35
GGTCGCC	67475	41.780525	43
AAGAGCG	104195	41.75224	7
TCGGTGG	79985	41.607162	38
TCTCGGT	76165	41.517696	36