G116-M2_CGATGT_BC72YLANXX_L008_001.R1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	G116-M2_CGATGT_BC72YLANXX_L008_001.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	26637024
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC	538011	2.0197864446118303	TruSeq Adapter, Index 2 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	68275	43.54079	1
ATCGGAA	68430	43.27978	2
TCGGAAG	69400	42.858185	3
CGGAAGA	69365	42.676888	4
CGTCTGA	69720	42.655167	16
ACACGTC	69815	42.625477	13
ACGTCTG	70250	42.49302	15
CGTATGC	68165	42.48342	44
TCGTATG	68545	42.305805	43
CTCGTAT	66675	42.30507	42
CGATGTA	66480	42.28262	34
ACCGATG	67310	42.27749	32
TCTCGTA	62125	42.25873	41
CACCGAT	67455	42.248558	31
GTCACCG	68875	42.182205	29
CCGATGT	67045	42.11656	33
CACGTCT	71145	41.924458	14
GCACACG	71105	41.852158	11
TATCTCG	62225	41.833878	39
TCACCGA	68700	41.78705	30