G154-M9-Index9_GATCAG-_ACB6A7ANXX_L007_001.R1.fastq FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	G154-M9-Index9_GATCAG-_ACB6A7ANXX_L007_001.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20895360
Sequences flagged as poor quality	0
Sequence length	50
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	610	0.0	9.73884	1
CGATCAG	690	0.0	9.246459	33
CTCGTAT	660	0.0	9.000037	42
CGTATGC	690	1.8189894E-12	8.289731	44
ACGATCA	765	0.0	8.052148	32
GTCACGA	860	0.0	7.674156	29
TCTCGTA	610	5.7334546E-9	7.5740194	41
TCGTATG	760	1.8189894E-11	7.5262027	43
ATCGGAA	855	0.0	7.4626803	2
CACGATC	990	0.0	6.888489	31
CGTCTGA	965	1.1277734E-10	6.383141	16
ACGTCTG	1270	0.0	6.062698	15
GATCTCG	805	1.7421917E-7	6.012706	39
ATCTCGT	1030	2.1067535E-8	5.553607	40
TCGGAAG	1245	1.8208084E-9	5.3013787	3
TCACGAT	1390	1.0968506E-9	5.0644298	30