FastQCFastQC Report
Thu 4 Jan 2024
G219M4_CKDL230043734-1A_22GGGVLT3_L8_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameG219M4_CKDL230043734-1A_22GGGVLT3_L8_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20658438
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCCTCTGCCGCCGCCTCCCCTGGGCTCCGGCCTCTTCCAGGCCGCGC511570.2476324686309778No Hit
CCACTCTTCCCTTCCCTTTGGGGCCTGAAGCCTTCTTGGTCTAATCTGTT327070.1583227153960043No Hit
CCACCCTGTCCCAACCCCCATGCCCTGTTCCTGCAGAGCCTGGCTCAAAG320290.1550407634885077No Hit
AGGCAGCAGAGGTAGAGCTTCCTTGTTGCCACAAATGAGAACACAAGAAT304270.14728606296371488No Hit
TCCCCTGAGATGTGATCCTGAGACAGAATCCCAGGGCAAAGTCCTGCAAG299330.14489478827005217No Hit
GCTTCCCAGTCTGTGTTCTCCCACTTGGGGGGTAGAGGAACGGCAGACTT285580.13823891235145658No Hit
TTGGACCACGAACAACAAGATTTTTCCCTTCTGTTAACAGATCAAAGACA285030.13797267731471277No Hit
TCTTCCAGGCCGCGCCGTTCGGGCTCCGGCTCCGGCCCAGCGCCCGCCGC238100.11525556772491706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)