FastQCFastQC Report
Thu 4 Jan 2024
G219M20_CKDL230043734-1A_22GGGVLT3_L8_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameG219M20_CKDL230043734-1A_22GGGVLT3_L8_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18118358
Sequences flagged as poor quality0
Sequence length150
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATGGAGAGTCCAAGAGCCAAACCCGGAGGTGAGCAGAGTCCAAGAGC482590.2663541585832447No Hit
ACACTGCCGGGTGCTTCAGCGAGGAGGCAAGGGTGGGAACAATGGGCAGA336000.18544726845556314No Hit
GCTTCCCAGTCTGTGTTCTCCCACTTGGGGGGTAGAGGAACGGCAGACTT291280.16076512010635843No Hit
GCTGCCTCTGCCGCCGCCTCCCCTGGGCTCCGGCCTCTTCCAGGCCGCGC282480.15590816783728415No Hit
CCACCCTGTCCCAACCCCCATGCCCTGTTCCTGCAGAGCCTGGCTCAAAG277260.15302711205949238No Hit
ATGGACTGCAAGGGAGTCCGCATTCCAGGCGGCTTAGGTTGCTCCTGTAC265410.1464867842880685No Hit
TCCTGAGCAAGTTGTACCATGGGGTTCTGTCTCTGCCTGAGCAGCTGTGG255940.14126004133487152No Hit
CCTCATCCTGGATGCTGCTCTTGCCATGGAGTTGCTGTGTACCTCTTTGC255620.14108342488872336No Hit
GGGAAAGATGTATGCTCAATATATTTGGCCTAAAACCCCACTATCCCATC250670.1383513892373691No Hit
CCGGTCAGGTTCAGGCATTGACTACACAAGTACCCAGGCTGGACCGGCAG219360.1210705738345605No Hit
GGCTGGATGCTGCTTGTTGACTTGCTCCACATGAGCAGTGCCAAGCCTCA213370.11776453473322471No Hit
GCCACCTCGTTGAGCGATGGGTGTGGCGGGAGCGCGCGGGCCTGCGCCCC211600.11678762501546773No Hit
AGGCTGGACCGGCAGTTGATGGCAGAGATTCAGGCATCATGGAGAGTCCA201720.11133459224064345No Hit
TTGGACCACGAACAACAAGATTTTTCCCTTCTGTTAACAGATCAAAGACA197560.10903857844071742No Hit
TTCTTCAGGTGGGCGCGGGTGGCGGCTTAGCGCCGAGGCCCCACCTCCGC189290.10447414716057604No Hit
CGTGCCTAGCGCTGCTTACTGTGAGGGTGTGAGCTTGCTCGCCTTCGTCT188000.10376216211204128No Hit
AGGAACGGCAGACTTCCTTTTCATGGTGGTGAGTGCCACCCTGTCCCAAC186810.10310536970292783No Hit
CCGATCTGGCAGGTGCAGAATCGCCCGGGGTGAGGCGACCTCCCAACAGC186750.10307225411927505No Hit
CATCTTTTGGCCTCTAGTCATGAGCCAAACCTTGGTCTACCCTGTGGGCA186320.10283492576976347No Hit
AGGCAGCAGAGGTAGAGCTTCCTTGTTGCCACAAATGAGAACACAAGAAT186280.10281284871399493No Hit
TCCCATCATGTTCCTCAGGGCTAGAATGAGGATCTGAGCCGACCAGTTAA185440.10234923054285605No Hit
AGCCATCTCTCCAGCCCTGTAGCACGATTTTTTATCTTGTTACAACAGGA184840.10201807470632825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)