FastQCFastQC Report
Thu 18 May 2023
G202M6_CKDL230013148-1A_H5NKYDSX7_L1_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameG202M6_CKDL230013148-1A_H5NKYDSX7_L1_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15190677
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTCCAGCAATATTTCAAATCTAAGTTTGCTCTGAGTCAACTACAGACC374940.24682244247573693No Hit
TGATGCTTTACCTTCATCACTGATGCGAACATCCAGCTTCTCTCTGACTC353210.23251761590349132No Hit
TCATGGAAGGTCAGCTTTGAGGTTTCAGAAGCCCATACCATTCCCAGTTA347380.22867973560362054No Hit
AGGCTATCACTGGCTTCCCTTTTGTCTACATAAATGCTTTCACGGGCCTG295210.1943363024570926No Hit
ACAGGTATCCACAACTGGCTCTAGAGTAGATCCAAGTACACCTTCATCTC272480.17937317737715047No Hit
GGCTGGCGTCTGAAGCCCCAGCCTAGCAGCATCGGACCTGAGTTCCTCTG250830.1651210146855206No Hit
TTAGGTATAGCAGCAAGTATCTTCACCCTCAGAGTCACTACTCCCACACT248360.16349501737151018No Hit
CCAACACAAAACCCCAAGAAAAATCATTGGTTCACCAAGTTGGGCTTTGG245170.16139504513195824No Hit
GGTTGATTTCTCTGACCCTCAACTGGCCTGATTAGAAGACCTGGCATTCT236580.15574026095084506No Hit
ATGTGTGACCCCTCAAAGGGAGGAGATTCCGTGGCGCGGTGGCAGTGGCC224810.1479920875152569No Hit
AGGTCAGCTTTGAGGTTTCAGAAGCCCATACCATTCCCAGTTAGCTCTCT207890.1368536767650316No Hit
TCAATCAGTGGCATCAATTTGAACAAATTATTGAGAAATGATAAAGCTGT206660.13604396960056486No Hit
CGGCTTGCTTGCTTGCTCGCTTTCAGATCTCTAAAGGCATCTTGGTTTCT198060.13038260243437472No Hit
TTAAATAAATGGCCCCAAATGATATTTTTGTCCTAAACCAGGTAGCTGGT188150.1238588642231021No Hit
AAAGCAAAGGTACTGAGTCCTGTGTGTCATCATTTCTAAGAGCTCCCTGG178650.11760502839998506No Hit
TGAGCCTTGCAAATATTAATGAATACTGCTTTGCACTCCCAGCTTCCCCT176840.11641350810105434No Hit
CCTCCCACCCCTGGGCTGTACCTGCCACAACCTTCTCTGCGTGACCTGTG174430.11482700869750573No Hit
TCTGTCGCCCTGTAGAGGATCCTGGCTCTGGGCCCTGTTCTGCACTGTCT170810.11244396809964427No Hit
CCTGCCTAGTGTCTGCCTGCCGAGAGGACTGGACTGGACTGTTGCTGAGT167180.11005434451670587No Hit
ACCCGGCCACTCTTCCTGCCCCATGGACCTCACTGGCAACAACACTCTGA166040.10930388421793182No Hit
TCTAGTTGAAAGAGAGATTAAACAATGTTTGATTAGTCAAGAATGTTCCA164050.10799387018761573No Hit
ATCCTATGCTCACTGAGGATTGCTGGTTATGTTTGGGCTTGGGGGTGACG159800.1051961015299055No Hit
TGACTTAGGAGGAAGGTCAGAAAAACATGGTGATTTCGGGCACAGAATCT153740.10120681257326451No Hit
TCACTGGTGATGAGAAACATTGCATGGAGGGCTTCAGAGTCAGAGGCCTT152270.1002391137669506No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)