Basic Statistics
| Measure | Value |
|---|---|
| Filename | G124-G125-M20M38-NEBNext4_TGACCA-_AC8KUAANXX_L008_001.R1.fastq |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 16529069 |
| Sequences flagged as poor quality | 0 |
| Sequence length | 50 |
| %GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
| Sequence | Count | Percentage | Possible Source |
|---|---|---|---|
| GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC | 548721 | 3.319733252973897 | TruSeq Adapter, Index 4 (100% over 50bp) |
| GCCCGGGGGGCGGACCCGGCGGGGGAACACCGACGCGGAGGTTCCCCCCA | 165352 | 1.0003709222824346 | No Hit |
| CCCGGGGGGCGGACCCGGCGGGGGAACACCGACGCGGAGGTTCCCCCCAC | 54464 | 0.32950434171458776 | No Hit |
| CCGGGGGGCGGACCCGGCGGGGGAACACCGACGCGGAGGTTCCCCCCACA | 49125 | 0.29720367190674807 | No Hit |
| GCCGGCCCCCCCGAGTGTCCGGGCCCCCCGCCCCACCGGGGGCCCGCTGG | 37123 | 0.22459220177494568 | No Hit |
| CCCGAGTGTCCGGGCCCCCCGCCCCACCGGGGGCCCGCTGGTTCCTCCCG | 27535 | 0.16658530495577215 | No Hit |
| CGGGGGGCGGACCCGGCGGGGGAACACCGACGCGGAGGTTCCCCCCACAC | 24166 | 0.146203031761801 | No Hit |
| GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT | 20598 | 0.12461681901140349 | No Hit |
| GGCCCGGGGGGCGGACCCGGCGGGGGAACACCGACGCGGAGGTTCCCCCC | 19360 | 0.11712698398197745 | No Hit |
| GTGATTATTGCCTATAGTCTGATTAACTAACAATGGTTATCCGAGTTGTT | 18188 | 0.11003644548885361 | No Hit |
| GCGGCGACGGGTATCTGGCTTCCTCGGCCCCGGGATTCGGCGAAAGCTGC | 17311 | 0.10473064151405019 | No Hit |
| GTCGCCGCCGCCGCCGGCCCCCCCGAGTGTCCGGGCCCCCCGCCCCACCG | 16990 | 0.10278860836021678 | No Hit |
Adapter Content
Kmer Content
| Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GATCGGA | 67090 | 0.0 | 43.72604 | 1 |
| ATCGGAA | 67500 | 0.0 | 43.3865 | 2 |
| CGTCTGA | 67870 | 0.0 | 43.021603 | 16 |
| ACGTCTG | 67820 | 0.0 | 43.017612 | 15 |
| TCGGAAG | 68210 | 0.0 | 42.925213 | 3 |
| CGGAAGA | 68595 | 0.0 | 42.642612 | 4 |
| AATCTCG | 61015 | 0.0 | 42.391155 | 39 |
| CTCGTAT | 64825 | 0.0 | 42.252506 | 42 |
| ATCTCGT | 61475 | 0.0 | 42.227795 | 40 |
| GCACACG | 69395 | 0.0 | 42.130802 | 11 |
| ACACGTC | 69670 | 0.0 | 41.9891 | 13 |
| TCGTATG | 67615 | 0.0 | 41.572292 | 43 |
| CACGTCT | 70365 | 0.0 | 41.57124 | 14 |
| CACACGT | 70430 | 0.0 | 41.545013 | 12 |
| TCTCGTA | 62930 | 0.0 | 41.45366 | 41 |
| ACTGACC | 67120 | 0.0 | 41.402996 | 32 |
| ACCAATC | 62105 | 0.0 | 41.307175 | 36 |
| GACCAAT | 63450 | 0.0 | 41.27734 | 35 |
| GAACTCC | 70625 | 0.0 | 41.020584 | 21 |
| CCAATCT | 62995 | 0.0 | 40.74453 | 37 |