Module	Section	Sample Name	Source
MACS2	all_sections	G215M12_broad_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M12/fastq/bowtie2/G215M12_MACS2_output/G215M12_broad_MACS2_peaks.xls
MACS2	all_sections	G215M12_narrow_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M12/fastq/bowtie2/G215M12_MACS2_output/G215M12_narrow_MACS2_peaks.xls
MACS2	all_sections	G215M9_broad_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M9/fastq/bowtie2/G215M9_MACS2_output/G215M9_broad_MACS2_peaks.xls
MACS2	all_sections	G215M9_narrow_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M9/fastq/bowtie2/G215M9_MACS2_output/G215M9_narrow_MACS2_peaks.xls
MACS2	all_sections	G215M5_narrow_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M5/fastq/bowtie2/G215M5_MACS2_output/G215M5_narrow_MACS2_peaks.xls
MACS2	all_sections	G215M5_broad_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M5/fastq/bowtie2/G215M5_MACS2_output/G215M5_broad_MACS2_peaks.xls
MACS2	all_sections	G215M8_broad_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M8/fastq/bowtie2/G215M8_MACS2_output/G215M8_broad_MACS2_peaks.xls
MACS2	all_sections	G215M8_narrow_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M8/fastq/bowtie2/G215M8_MACS2_output/G215M8_narrow_MACS2_peaks.xls
MACS2	all_sections	G215M11_broad_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M11/fastq/bowtie2/G215M11_MACS2_output/G215M11_broad_MACS2_peaks.xls
MACS2	all_sections	G215M11_narrow_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M11/fastq/bowtie2/G215M11_MACS2_output/G215M11_narrow_MACS2_peaks.xls
MACS2	all_sections	G215M16_narrow_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M16/fastq/bowtie2/G215M16_MACS2_output/G215M16_narrow_MACS2_peaks.xls
MACS2	all_sections	G215M16_broad_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M16/fastq/bowtie2/G215M16_MACS2_output/G215M16_broad_MACS2_peaks.xls
MACS2	all_sections	G215M7_narrow_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M7/fastq/bowtie2/G215M7_MACS2_output/G215M7_narrow_MACS2_peaks.xls
MACS2	all_sections	G215M7_broad_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M7/fastq/bowtie2/G215M7_MACS2_output/G215M7_broad_MACS2_peaks.xls
MACS2	all_sections	G215M13_broad_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M13/fastq/bowtie2/G215M13_MACS2_output/G215M13_broad_MACS2_peaks.xls
MACS2	all_sections	G215M13_narrow_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M13/fastq/bowtie2/G215M13_MACS2_output/G215M13_narrow_MACS2_peaks.xls
MACS2	all_sections	G215M10_narrow_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M10/fastq/bowtie2/G215M10_MACS2_output/G215M10_narrow_MACS2_peaks.xls
MACS2	all_sections	G215M10_broad_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M10/fastq/bowtie2/G215M10_MACS2_output/G215M10_broad_MACS2_peaks.xls
MACS2	all_sections	G215M15_narrow_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M15/fastq/bowtie2/G215M15_MACS2_output/G215M15_narrow_MACS2_peaks.xls
MACS2	all_sections	G215M15_broad_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M15/fastq/bowtie2/G215M15_MACS2_output/G215M15_broad_MACS2_peaks.xls
MACS2	all_sections	G215M6_narrow_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M6/fastq/bowtie2/G215M6_MACS2_output/G215M6_narrow_MACS2_peaks.xls
MACS2	all_sections	G215M6_broad_MACS2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M6/fastq/bowtie2/G215M6_MACS2_output/G215M6_broad_MACS2_peaks.xls
Picard	InsertSizeMetrics	G215M12_sorted_mapped	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M12/fastq/bowtie2/CollectInsertSizeMetrics/G215M12_metrics
Picard	InsertSizeMetrics	G215M9_sorted_mapped	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M9/fastq/bowtie2/CollectInsertSizeMetrics/G215M9_metrics
Picard	InsertSizeMetrics	G215M5_sorted_mapped	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M5/fastq/bowtie2/CollectInsertSizeMetrics/G215M5_metrics
Picard	InsertSizeMetrics	G215M8_sorted_mapped	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M8/fastq/bowtie2/CollectInsertSizeMetrics/G215M8_metrics
Picard	InsertSizeMetrics	G215M11_sorted_mapped	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M11/fastq/bowtie2/CollectInsertSizeMetrics/G215M11_metrics
Picard	InsertSizeMetrics	G215M16_sorted_mapped	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M16/fastq/bowtie2/CollectInsertSizeMetrics/G215M16_metrics
Picard	InsertSizeMetrics	G215M7_sorted_mapped	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M7/fastq/bowtie2/CollectInsertSizeMetrics/G215M7_metrics
Picard	InsertSizeMetrics	G215M13_sorted_mapped	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M13/fastq/bowtie2/CollectInsertSizeMetrics/G215M13_metrics
Picard	InsertSizeMetrics	G215M10_sorted_mapped	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M10/fastq/bowtie2/CollectInsertSizeMetrics/G215M10_metrics
Picard	InsertSizeMetrics	G215M15_sorted_mapped	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M15/fastq/bowtie2/CollectInsertSizeMetrics/G215M15_metrics
Picard	InsertSizeMetrics	G215M6_sorted_mapped	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M6/fastq/bowtie2/CollectInsertSizeMetrics/G215M6_metrics
Samtools	flagstat	flagstat_G215M12	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M12/fastq/bowtie2/flagstat_G215M12.txt
Samtools	flagstat	flagstat_G215M9	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M9/fastq/bowtie2/flagstat_G215M9.txt
Samtools	flagstat	flagstat_G215M5	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M5/fastq/bowtie2/flagstat_G215M5.txt
Samtools	flagstat	flagstat_G215M8	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M8/fastq/bowtie2/flagstat_G215M8.txt
Samtools	flagstat	flagstat_G215M11	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M11/fastq/bowtie2/flagstat_G215M11.txt
Samtools	flagstat	flagstat_G215M16	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M16/fastq/bowtie2/flagstat_G215M16.txt
Samtools	flagstat	flagstat_G215M7	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M7/fastq/bowtie2/flagstat_G215M7.txt
Samtools	flagstat	flagstat_G215M13	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M13/fastq/bowtie2/flagstat_G215M13.txt
Samtools	flagstat	flagstat_G215M10	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M10/fastq/bowtie2/flagstat_G215M10.txt
Samtools	flagstat	flagstat_G215M15	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M15/fastq/bowtie2/flagstat_G215M15.txt
Samtools	flagstat	flagstat_G215M6	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M6/fastq/bowtie2/flagstat_G215M6.txt
Samtools	idxstats	G215M12_idxstats	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M12_idxstats.out
Samtools	idxstats	G215M9_idxstats	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M9_idxstats.out
Samtools	idxstats	G215M5_idxstats	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M5_idxstats.out
Samtools	idxstats	G215M8_idxstats	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M8_idxstats.out
Samtools	idxstats	G215M11_idxstats	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M11_idxstats.out
Samtools	idxstats	G215M16_idxstats	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M16_idxstats.out
Samtools	idxstats	G215M7_idxstats	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M7_idxstats.out
Samtools	idxstats	G215M13_idxstats	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M13_idxstats.out
Samtools	idxstats	G215M10_idxstats	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M10_idxstats.out
Samtools	idxstats	G215M15_idxstats	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M15/fastq/bowtie2/G215M15_idxstats.out
Samtools	idxstats	G215M6_idxstats	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M6/fastq/bowtie2/G215M6_idxstats.out
Bowtie 2 / HiSAT2	all_sections	G215M11_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M11.o1964055
Bowtie 2 / HiSAT2	all_sections	G215M16_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M16.o1964059
Bowtie 2 / HiSAT2	all_sections	G215M15_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M15.o1964058
Bowtie 2 / HiSAT2	all_sections	G215M12_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M12.o1964056
Bowtie 2 / HiSAT2	all_sections	G215M13_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M13.o1964057
Bowtie 2 / HiSAT2	all_sections	G215M7_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M7.o1964051
Bowtie 2 / HiSAT2	all_sections	G215M9_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M9.o1964053
Bowtie 2 / HiSAT2	all_sections	G215M5_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M5.o1964049
Bowtie 2 / HiSAT2	all_sections	G215M10_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M10.o1964054
Bowtie 2 / HiSAT2	all_sections	README_Bowtie2.sh	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/README_Bowtie2.sh
Bowtie 2 / HiSAT2	all_sections	G215M8_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M8.o1964052
Bowtie 2 / HiSAT2	all_sections	G215M6_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M6.o1964050
FastQC	all_sections	G215M5_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M5_FASTQC/G215M5_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M5_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M5_FASTQC/G215M5_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G215M9_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M9_FASTQC/G215M9_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M9_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M9_FASTQC/G215M9_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G215M8_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M8_FASTQC/G215M8_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G215M8_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M8_FASTQC/G215M8_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M12_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M12_FASTQC/G215M12_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G215M12_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M12_FASTQC/G215M12_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M7_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M7_FASTQC/G215M7_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M7_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M7_FASTQC/G215M7_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G215M11_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M11_FASTQC/G215M11_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M11_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M11_FASTQC/G215M11_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G215M16_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M16_FASTQC/G215M16_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G215M16_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M16_FASTQC/G215M16_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M13_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M13_FASTQC/G215M13_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M13_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M13_FASTQC/G215M13_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G215M6_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M6_FASTQC/G215M6_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M6_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M6_FASTQC/G215M6_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G215M10_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M10_FASTQC/G215M10_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G215M10_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M10_FASTQC/G215M10_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M15_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M15_FASTQC/G215M15_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M15_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M15_FASTQC/G215M15_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip