{
"report_data_sources": {
"MACS2": {
"all_sections": {
"G215M12_broad_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M12/fastq/bowtie2/G215M12_MACS2_output/G215M12_broad_MACS2_peaks.xls",
"G215M12_narrow_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M12/fastq/bowtie2/G215M12_MACS2_output/G215M12_narrow_MACS2_peaks.xls",
"G215M9_broad_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M9/fastq/bowtie2/G215M9_MACS2_output/G215M9_broad_MACS2_peaks.xls",
"G215M9_narrow_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M9/fastq/bowtie2/G215M9_MACS2_output/G215M9_narrow_MACS2_peaks.xls",
"G215M5_narrow_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M5/fastq/bowtie2/G215M5_MACS2_output/G215M5_narrow_MACS2_peaks.xls",
"G215M5_broad_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M5/fastq/bowtie2/G215M5_MACS2_output/G215M5_broad_MACS2_peaks.xls",
"G215M8_broad_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M8/fastq/bowtie2/G215M8_MACS2_output/G215M8_broad_MACS2_peaks.xls",
"G215M8_narrow_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M8/fastq/bowtie2/G215M8_MACS2_output/G215M8_narrow_MACS2_peaks.xls",
"G215M11_broad_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M11/fastq/bowtie2/G215M11_MACS2_output/G215M11_broad_MACS2_peaks.xls",
"G215M11_narrow_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M11/fastq/bowtie2/G215M11_MACS2_output/G215M11_narrow_MACS2_peaks.xls",
"G215M16_narrow_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M16/fastq/bowtie2/G215M16_MACS2_output/G215M16_narrow_MACS2_peaks.xls",
"G215M16_broad_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M16/fastq/bowtie2/G215M16_MACS2_output/G215M16_broad_MACS2_peaks.xls",
"G215M7_narrow_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M7/fastq/bowtie2/G215M7_MACS2_output/G215M7_narrow_MACS2_peaks.xls",
"G215M7_broad_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M7/fastq/bowtie2/G215M7_MACS2_output/G215M7_broad_MACS2_peaks.xls",
"G215M13_broad_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M13/fastq/bowtie2/G215M13_MACS2_output/G215M13_broad_MACS2_peaks.xls",
"G215M13_narrow_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M13/fastq/bowtie2/G215M13_MACS2_output/G215M13_narrow_MACS2_peaks.xls",
"G215M10_narrow_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M10/fastq/bowtie2/G215M10_MACS2_output/G215M10_narrow_MACS2_peaks.xls",
"G215M10_broad_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M10/fastq/bowtie2/G215M10_MACS2_output/G215M10_broad_MACS2_peaks.xls",
"G215M15_narrow_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M15/fastq/bowtie2/G215M15_MACS2_output/G215M15_narrow_MACS2_peaks.xls",
"G215M15_broad_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M15/fastq/bowtie2/G215M15_MACS2_output/G215M15_broad_MACS2_peaks.xls",
"G215M6_narrow_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M6/fastq/bowtie2/G215M6_MACS2_output/G215M6_narrow_MACS2_peaks.xls",
"G215M6_broad_MACS2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M6/fastq/bowtie2/G215M6_MACS2_output/G215M6_broad_MACS2_peaks.xls"
}
},
"Picard": {
"InsertSizeMetrics": {
"G215M12_sorted_mapped": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M12/fastq/bowtie2/CollectInsertSizeMetrics/G215M12_metrics",
"G215M9_sorted_mapped": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M9/fastq/bowtie2/CollectInsertSizeMetrics/G215M9_metrics",
"G215M5_sorted_mapped": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M5/fastq/bowtie2/CollectInsertSizeMetrics/G215M5_metrics",
"G215M8_sorted_mapped": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M8/fastq/bowtie2/CollectInsertSizeMetrics/G215M8_metrics",
"G215M11_sorted_mapped": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M11/fastq/bowtie2/CollectInsertSizeMetrics/G215M11_metrics",
"G215M16_sorted_mapped": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M16/fastq/bowtie2/CollectInsertSizeMetrics/G215M16_metrics",
"G215M7_sorted_mapped": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M7/fastq/bowtie2/CollectInsertSizeMetrics/G215M7_metrics",
"G215M13_sorted_mapped": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M13/fastq/bowtie2/CollectInsertSizeMetrics/G215M13_metrics",
"G215M10_sorted_mapped": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M10/fastq/bowtie2/CollectInsertSizeMetrics/G215M10_metrics",
"G215M15_sorted_mapped": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M15/fastq/bowtie2/CollectInsertSizeMetrics/G215M15_metrics",
"G215M6_sorted_mapped": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M6/fastq/bowtie2/CollectInsertSizeMetrics/G215M6_metrics"
}
},
"Samtools": {
"flagstat": {
"flagstat_G215M12": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M12/fastq/bowtie2/flagstat_G215M12.txt",
"flagstat_G215M9": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M9/fastq/bowtie2/flagstat_G215M9.txt",
"flagstat_G215M5": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M5/fastq/bowtie2/flagstat_G215M5.txt",
"flagstat_G215M8": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M8/fastq/bowtie2/flagstat_G215M8.txt",
"flagstat_G215M11": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M11/fastq/bowtie2/flagstat_G215M11.txt",
"flagstat_G215M16": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M16/fastq/bowtie2/flagstat_G215M16.txt",
"flagstat_G215M7": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M7/fastq/bowtie2/flagstat_G215M7.txt",
"flagstat_G215M13": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M13/fastq/bowtie2/flagstat_G215M13.txt",
"flagstat_G215M10": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M10/fastq/bowtie2/flagstat_G215M10.txt",
"flagstat_G215M15": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M15/fastq/bowtie2/flagstat_G215M15.txt",
"flagstat_G215M6": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M6/fastq/bowtie2/flagstat_G215M6.txt"
},
"idxstats": {
"G215M12_idxstats": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M12_idxstats.out",
"G215M9_idxstats": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M9_idxstats.out",
"G215M5_idxstats": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M5_idxstats.out",
"G215M8_idxstats": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M8_idxstats.out",
"G215M11_idxstats": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M11_idxstats.out",
"G215M16_idxstats": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M16_idxstats.out",
"G215M7_idxstats": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M7_idxstats.out",
"G215M13_idxstats": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M13_idxstats.out",
"G215M10_idxstats": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M10_idxstats.out",
"G215M15_idxstats": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M15/fastq/bowtie2/G215M15_idxstats.out",
"G215M6_idxstats": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/G215M6/fastq/bowtie2/G215M6_idxstats.out"
}
},
"Bowtie 2 / HiSAT2": {
"all_sections": {
"G215M11_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M11.o1964055",
"G215M16_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M16.o1964059",
"G215M15_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M15.o1964058",
"G215M12_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M12.o1964056",
"G215M13_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M13.o1964057",
"G215M7_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M7.o1964051",
"G215M9_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M9.o1964053",
"G215M5_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M5.o1964049",
"G215M10_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M10.o1964054",
"README_Bowtie2.sh": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/README_Bowtie2.sh",
"G215M8_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M8.o1964052",
"G215M6_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/04_Bowtie2/Step_04_G215_k4me1_k27ac_k9ac_G215M6.o1964050"
}
},
"FastQC": {
"all_sections": {
"G215M5_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M5_FASTQC/G215M5_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M5_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M5_FASTQC/G215M5_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip",
"G215M9_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M9_FASTQC/G215M9_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M9_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M9_FASTQC/G215M9_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip",
"G215M8_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M8_FASTQC/G215M8_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip",
"G215M8_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M8_FASTQC/G215M8_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M12_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M12_FASTQC/G215M12_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip",
"G215M12_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M12_FASTQC/G215M12_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M7_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M7_FASTQC/G215M7_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M7_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M7_FASTQC/G215M7_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip",
"G215M11_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M11_FASTQC/G215M11_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M11_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M11_FASTQC/G215M11_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip",
"G215M16_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M16_FASTQC/G215M16_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip",
"G215M16_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M16_FASTQC/G215M16_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M13_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M13_FASTQC/G215M13_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M13_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M13_FASTQC/G215M13_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip",
"G215M6_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M6_FASTQC/G215M6_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M6_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M6_FASTQC/G215M6_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip",
"G215M10_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M10_FASTQC/G215M10_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip",
"G215M10_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M10_FASTQC/G215M10_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M15_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M15_FASTQC/G215M15_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M15_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac/Scripts/02_FASTQC/Job_Summary/G215M15_FASTQC/G215M15_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip"
}
}
},
"report_general_stats_data": [
{
"G215M12_broad_MACS2": {
"peak_count": 24812,
"fragment_size": 292.0,
"treatment_fragments_total": 5897514.0,
"d": 292.0
},
"G215M12_narrow_MACS2": {
"peak_count": 10857,
"fragment_size": 292.0,
"treatment_fragments_total": 5897514.0,
"d": 292.0
},
"G215M9_broad_MACS2": {
"peak_count": 11107,
"fragment_size": 305.0,
"treatment_fragments_total": 2586606.0,
"d": 305.0
},
"G215M9_narrow_MACS2": {
"peak_count": 1926,
"fragment_size": 305.0,
"treatment_fragments_total": 2586606.0,
"d": 305.0
},
"G215M5_narrow_MACS2": {
"peak_count": 525,
"fragment_size": 286.0,
"treatment_fragments_total": 3847878.0,
"d": 286.0
},
"G215M5_broad_MACS2": {
"peak_count": 3627,
"fragment_size": 286.0,
"treatment_fragments_total": 3847878.0,
"d": 286.0
},
"G215M8_broad_MACS2": {
"peak_count": 3998,
"fragment_size": 264.0,
"treatment_fragments_total": 5639311.0,
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