Sample	total_reads	paired_total	paired_aligned_none	paired_aligned_one	paired_aligned_multi	paired_aligned_discord_one	paired_aligned_mate_none	paired_aligned_mate_one	paired_aligned_mate_multi	overall_alignment_rate	paired_aligned_mate_multi_halved	paired_aligned_mate_none_halved	paired_aligned_mate_one_halved
G215M10_CKDL230032530-1A_H77VKDSX7_L3_R1	4886339	4886339	898563	3113252	874524	444824	386918	250864	269696	96.04	134848.0	193459.0	125432.0
G215M11_CKDL230032530-1A_H77VKDSX7_L3_R1	6415755	6415755	976586	4224116	1215053	467565	560189	212995	244858	95.63	122429.0	280094.5	106497.5
G215M12_CKDL230032530-1A_H77VKDSX7_L3_R1	8279153	8279153	1116739	6051004	1111410	526645	692930	264097	223161	95.82	111580.5	346465.0	132048.5
G215M13_CKDL230032530-1A_H77VKDSX7_L3_R1	10847773	10847773	1527396	8183609	1136768	743718	1025499	315918	225939	95.27	112969.5	512749.5	157959.0
G215M15_CKDL230032530-1A_H77VKDSX7_L3_R1	7974568	7974568	1462499	5327199	1184870	710103	997360	249538	257894	93.75	128947.0	498680.0	124769.0
G215M16_CKDL230032530-1A_H77VKDSX7_L3_R1	8110397	8110397	1655723	5119353	1335321	803679	1190870	239485	273733	92.66	136866.5	595435.0	119742.5
G215M5_CKDL230032530-1A_H77VKDSX7_L3_R1	6602096	6602096	1287357	3975859	1338880	587728	861679	232561	305018	93.47	152509.0	430839.5	116280.5
G215M6_CKDL230032530-1A_H77VKDSX7_L3_R1	8470581	8470581	1506402	5097454	1866725	663522	1064970	259785	361005	93.71	180502.5	532485.0	129892.5
G215M7_CKDL230032530-1A_H77VKDSX7_L3_R1	11087894	11087894	1985150	6836585	2266159	910557	1313416	358722	477048	94.08	238524.0	656708.0	179361.0
G215M8_CKDL230032530-1A_H77VKDSX7_L3_R1	9231786	9231786	1553649	5795912	1882225	715601	1079774	251271	345051	94.15	172525.5	539887.0	125635.5
G215M9_CKDL230032530-1A_H77VKDSX7_L3_R1	4184115	4184115	693178	2672552	818385	329524	321810	192025	213473	96.15	106736.5	160905.0	96012.5
README_Bowtie2.sh	250000	250000								95.16