[2023-10-10 15:06:11,656] multiqc [DEBUG ] This is MultiQC v1.12 [2023-10-10 15:06:11,656] multiqc [DEBUG ] No MultiQC config found: /usr/lib/python3.8/site-packages/multiqc_config.yaml [2023-10-10 15:06:11,656] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2023-10-10 15:06:11,657] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-10-10 15:06:11,657] multiqc [DEBUG ] Command used: /usr/bin/multiqc . -o /net/waxman-server/mnt/data/waxmanlabvm_home/mpyatkov/G215_k4me1_k27ac_k9ac_MULTIQC/ [2023-10-10 15:06:11,885] multiqc [WARNING] MultiQC Version v1.16 now available! [2023-10-10 15:06:11,886] multiqc [DEBUG ] Command : /usr/bin/multiqc . -o /net/waxman-server/mnt/data/waxmanlabvm_home/mpyatkov/G215_k4me1_k27ac_k9ac_MULTIQC/ [2023-10-10 15:06:11,886] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac [2023-10-10 15:06:11,886] multiqc [DEBUG ] Template : default [2023-10-10 15:06:11,886] multiqc [DEBUG ] Running Python 3.8.1 (default, Dec 26 2019, 14:42:08) [GCC 9.2.0] [2023-10-10 15:06:11,888] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2023-10-10 15:06:11,888] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp1ne_bl1t [2023-10-10 15:06:12,018] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G215_k4me1_k27ac_k9ac [2023-10-10 15:06:12,531] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-10-10 15:06:12,534] 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[2023-10-10 15:06:12,610] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: copy_samples.py [2023-10-10 15:06:12,621] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: copy_samples.py [2023-10-10 15:06:12,684] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_diffReps.sh [2023-10-10 15:06:12,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_diffReps.sh [2023-10-10 15:06:12,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_diffReps.sh [2023-10-10 15:06:12,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_diffReps.sh [2023-10-10 15:06:12,711] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_diffReps.sh [2023-10-10 15:06:12,717] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: setup_diffReps.sh [2023-10-10 15:06:12,720] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: setup_diffReps.sh [2023-10-10 15:06:12,724] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: setup_diffReps.sh [2023-10-10 15:06:12,761] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:06:12,764] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:06:12,801] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffReps.qsub [2023-10-10 15:06:12,804] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffReps.qsub [2023-10-10 15:06:12,804] multiqc [DEBUG ] 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multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-10-10 15:06:13,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-10-10 15:06:13,043] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-10-10 15:06:13,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: DNAChIPseq_pipeline.pdf [2023-10-10 15:06:13,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_CKDL230032530-1A_H77VKDSX7_L3_R1.fastq.gz [2023-10-10 15:06:13,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_CKDL230032530-1A_H77VKDSX7_L3_R2.fastq.gz [2023-10-10 15:06:13,063] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_sorted_mapped.bam.bai [2023-10-10 15:06:13,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_alignments.bam [2023-10-10 15:06:13,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_sorted_mapped.bam [2023-10-10 15:06:13,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_alignments.bam.bai [2023-10-10 15:06:13,070] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:06:13,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:06:13,074] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:06:13,078] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:06:13,078] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 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15:06:13,099] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:06:14,236] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:06:14,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_filtered_StrgtPks.bam [2023-10-10 15:06:14,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_filtered_StrgtPks_sorted.bam.bai [2023-10-10 15:06:14,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_StrgtPksRm_tab.bed [2023-10-10 15:06:14,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_StrgtPks_tab.bed [2023-10-10 15:06:14,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_filtered_StrgtPks.bam.bai [2023-10-10 15:06:14,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_filtered_StrgtPks_sorted.bam [2023-10-10 15:06:14,327] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M12_metrics [2023-10-10 15:06:14,332] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M12_metrics [2023-10-10 15:06:14,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M12_metrics [2023-10-10 15:06:14,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M12_metrics [2023-10-10 15:06:14,356] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M12_metrics [2023-10-10 15:06:14,358] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_hist.pdf [2023-10-10 15:06:14,380] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:14,384] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:14,384] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:14,390] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:14,390] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:14,398] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:14,405] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M12_read_SICER.out1 [2023-10-10 15:06:14,407] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M12_read_SICER.out1 [2023-10-10 15:06:14,408] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M12_read_SICER.out1 [2023-10-10 15:06:14,413] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M12_read_SICER.out1 [2023-10-10 15:06:14,413] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M12_read_SICER.out1 [2023-10-10 15:06:14,413] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M12_read_SICER.out1 [2023-10-10 15:06:14,413] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M12_read_SICER.out1 [2023-10-10 15:06:14,413] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M12_read_SICER.out1 [2023-10-10 15:06:14,413] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M12_read_SICER.out1 [2023-10-10 15:06:14,413] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M12_read_SICER.out1 [2023-10-10 15:06:14,413] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M12_read_SICER.out1 [2023-10-10 15:06:14,422] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M12_read_SICER.out1 [2023-10-10 15:06:14,895] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M12_read_SICER.out1 [2023-10-10 15:06:14,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 15:06:14,948] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12-1-removed.bed [2023-10-10 15:06:14,949] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12-W400-G2400-E100-islandfiltered.bed [2023-10-10 15:06:14,955] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland [2023-10-10 15:06:14,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland [2023-10-10 15:06:14,958] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland [2023-10-10 15:06:14,962] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland [2023-10-10 15:06:14,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland [2023-10-10 15:06:14,963] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland [2023-10-10 15:06:14,963] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland [2023-10-10 15:06:14,963] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland [2023-10-10 15:06:14,963] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland [2023-10-10 15:06:14,963] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland [2023-10-10 15:06:15,420] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M12-W400-G2400-E100.scoreisland [2023-10-10 15:06:15,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 15:06:15,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:06:15,449] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:15,451] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:15,471] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 15:06:15,471] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:06:15,471] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 15:06:15,472] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12-W400-G2400-E100.scoreisland_common.bed [2023-10-10 15:06:15,502] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:15,505] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:15,506] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:15,512] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:15,512] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:15,512] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:15,512] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:15,513] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:15,513] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:15,513] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:15,513] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:15,529] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:16,351] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:16,424] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:06:16,430] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M12_read_MACS2_peaks.out1 [2023-10-10 15:06:16,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M12_read_MACS2_peaks.out1 [2023-10-10 15:06:16,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M12_read_MACS2_peaks.out1 [2023-10-10 15:06:16,437] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M12_read_MACS2_peaks.out1 [2023-10-10 15:06:16,437] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M12_read_MACS2_peaks.out1 [2023-10-10 15:06:16,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M12_read_MACS2_peaks.out1 [2023-10-10 15:06:16,438] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M12_read_MACS2_peaks.out1 [2023-10-10 15:06:16,438] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M12_read_MACS2_peaks.out1 [2023-10-10 15:06:16,438] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M12_read_MACS2_peaks.out1 [2023-10-10 15:06:16,438] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M12_read_MACS2_peaks.out1 [2023-10-10 15:06:16,438] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M12_read_MACS2_peaks.out1 [2023-10-10 15:06:16,444] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M12_read_MACS2_peaks.out1 [2023-10-10 15:06:16,771] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M12_read_MACS2_peaks.out1 [2023-10-10 15:06:16,789] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_broad_MACS2_peaks.broadPeak.bed [2023-10-10 15:06:16,812] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:16,814] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:16,815] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:16,819] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:16,820] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:16,820] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:16,820] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:16,820] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:16,820] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:16,820] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:16,820] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:16,826] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:17,161] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:17,210] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:17,213] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:17,214] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:17,220] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:17,221] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:17,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:17,221] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:17,221] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:17,221] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:17,221] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:17,221] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:17,235] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:17,969] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:18,024] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:18,026] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:18,027] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:18,031] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:18,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:18,039] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M12_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:18,045] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:18,047] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:18,047] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:18,051] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:18,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:18,058] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M12_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:18,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_narrow_MACS2_summits.bed [2023-10-10 15:06:18,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 15:06:18,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:06:18,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 15:06:18,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 15:06:18,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:18,068] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:18,081] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:06:18,082] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 15:06:18,084] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_CKDL230032530-1A_H77VKDSX7_L3_R2.fastq.gz [2023-10-10 15:06:18,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_CKDL230032530-1A_H77VKDSX7_L3_R1.fastq.gz [2023-10-10 15:06:18,113] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_alignments.bam.bai [2023-10-10 15:06:18,114] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_sorted_mapped.bam [2023-10-10 15:06:18,115] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_sorted_mapped.bam.bai [2023-10-10 15:06:18,115] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_alignments.bam [2023-10-10 15:06:18,140] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M9_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:18,144] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M9_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:18,144] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M9_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:18,151] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M9_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:18,151] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M9_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:18,226] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M9_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:18,257] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M9_read_MACS2_peaks.out1 [2023-10-10 15:06:18,262] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M9_read_MACS2_peaks.out1 [2023-10-10 15:06:18,262] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M9_read_MACS2_peaks.out1 [2023-10-10 15:06:18,268] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M9_read_MACS2_peaks.out1 [2023-10-10 15:06:18,269] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M9_read_MACS2_peaks.out1 [2023-10-10 15:06:18,342] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M9_read_MACS2_peaks.out1 [2023-10-10 15:06:18,351] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:18,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:18,354] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:18,358] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:18,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:18,365] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:18,367] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_narrow_MACS2_summits.bed [2023-10-10 15:06:18,368] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_broad_MACS2_peaks.broadPeak.bed [2023-10-10 15:06:18,369] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:06:18,423] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:18,426] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:18,427] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:18,435] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:18,435] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:18,436] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:18,436] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:18,436] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:18,436] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:18,437] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:18,437] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:18,449] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:18,809] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:18,863] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:18,868] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:18,868] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:18,874] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:18,874] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:18,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:18,874] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:18,874] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:18,874] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:18,874] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:18,875] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:18,882] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:19,215] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M9_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:19,241] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M9_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:19,243] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M9_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:19,244] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M9_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:19,248] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M9_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:19,255] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M9_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:19,256] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:06:19,260] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:19,263] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:19,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 15:06:19,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 15:06:19,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 15:06:19,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:06:19,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 15:06:19,298] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:06:19,300] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:06:19,301] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:06:19,305] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:06:19,305] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:06:19,306] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:06:19,306] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:06:19,306] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:06:19,306] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:06:19,306] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:06:19,306] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:06:19,328] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:06:20,490] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:06:20,559] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_StrgtPksRm_tab.bed [2023-10-10 15:06:20,559] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_StrgtPks_tab.bed [2023-10-10 15:06:20,560] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_filtered_StrgtPks.bam.bai [2023-10-10 15:06:20,560] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_filtered_StrgtPks.bam [2023-10-10 15:06:20,560] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_filtered_StrgtPks_sorted.bam [2023-10-10 15:06:20,560] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_filtered_StrgtPks_sorted.bam.bai [2023-10-10 15:06:20,566] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:20,568] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:20,568] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:20,573] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:20,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:20,580] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:20,604] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M9_read_SICER.out1 [2023-10-10 15:06:20,607] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M9_read_SICER.out1 [2023-10-10 15:06:20,608] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M9_read_SICER.out1 [2023-10-10 15:06:20,614] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M9_read_SICER.out1 [2023-10-10 15:06:20,614] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M9_read_SICER.out1 [2023-10-10 15:06:20,806] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M9_read_SICER.out1 [2023-10-10 15:06:20,849] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:20,853] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:20,853] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:20,860] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:20,860] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:20,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:20,860] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:20,860] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:20,860] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:20,860] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:20,860] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:20,981] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:26,749] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:27,107] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9-W400-G2400-E100-islandfiltered.bed [2023-10-10 15:06:27,113] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100.scoreisland [2023-10-10 15:06:27,116] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100.scoreisland [2023-10-10 15:06:27,116] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100.scoreisland [2023-10-10 15:06:27,121] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100.scoreisland [2023-10-10 15:06:27,121] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100.scoreisland [2023-10-10 15:06:27,297] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M9-W400-G2400-E100.scoreisland [2023-10-10 15:06:27,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 15:06:27,309] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9-1-removed.bed [2023-10-10 15:06:27,330] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:06:27,330] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 15:06:27,331] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 15:06:27,336] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:27,339] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:27,370] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:06:27,370] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9-W400-G2400-E100.scoreisland_common.bed [2023-10-10 15:06:27,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 15:06:27,399] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M9_metrics [2023-10-10 15:06:27,401] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M9_metrics [2023-10-10 15:06:27,402] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M9_metrics [2023-10-10 15:06:27,409] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M9_metrics [2023-10-10 15:06:27,434] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M9_metrics [2023-10-10 15:06:27,436] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_hist.pdf [2023-10-10 15:06:27,439] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_CKDL230032530-1A_H77VKDSX7_L3_R2.fastq.gz [2023-10-10 15:06:27,441] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_CKDL230032530-1A_H77VKDSX7_L3_R1.fastq.gz [2023-10-10 15:06:27,443] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_sorted_mapped.bam.bai [2023-10-10 15:06:27,480] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_alignments.bam.bai [2023-10-10 15:06:27,481] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_sorted_mapped.bam [2023-10-10 15:06:27,481] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_alignments.bam [2023-10-10 15:06:27,488] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:06:27,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:06:27,491] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:06:27,495] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:06:27,495] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:06:27,495] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:06:27,495] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:06:27,495] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:06:27,495] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:06:27,495] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:06:27,495] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:06:27,516] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:06:28,619] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:06:28,682] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:06:28,698] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:28,701] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:28,702] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:28,706] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:28,706] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:28,713] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:28,725] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M5_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:28,727] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M5_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:28,727] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M5_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:28,731] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M5_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:28,739] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M5_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:28,768] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M5_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:28,772] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M5_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:28,772] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M5_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:28,778] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M5_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:28,802] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M5_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:28,869] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:28,873] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:28,874] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:28,879] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:28,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:29,029] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:29,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:29,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:29,071] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:29,078] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:29,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:29,218] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M5_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:29,225] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_narrow_MACS2_summits.bed [2023-10-10 15:06:29,227] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_broad_MACS2_peaks.broadPeak.bed [2023-10-10 15:06:29,244] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M5_read_MACS2_peaks.out1 [2023-10-10 15:06:29,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M5_read_MACS2_peaks.out1 [2023-10-10 15:06:29,247] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M5_read_MACS2_peaks.out1 [2023-10-10 15:06:29,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M5_read_MACS2_peaks.out1 [2023-10-10 15:06:29,282] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M5_read_MACS2_peaks.out1 [2023-10-10 15:06:29,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:06:29,288] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:29,291] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:29,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:06:29,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 15:06:29,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 15:06:29,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 15:06:29,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 15:06:29,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_filtered_StrgtPks_sorted.bam.bai [2023-10-10 15:06:29,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_StrgtPksRm_tab.bed [2023-10-10 15:06:29,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_filtered_StrgtPks.bam [2023-10-10 15:06:29,305] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_filtered_StrgtPks.bam.bai [2023-10-10 15:06:29,305] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_filtered_StrgtPks_sorted.bam [2023-10-10 15:06:29,305] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_StrgtPks_tab.bed [2023-10-10 15:06:29,310] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M5_metrics [2023-10-10 15:06:29,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M5_metrics [2023-10-10 15:06:29,313] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M5_metrics [2023-10-10 15:06:29,317] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M5_metrics [2023-10-10 15:06:29,332] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M5_metrics [2023-10-10 15:06:29,333] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_hist.pdf [2023-10-10 15:06:29,356] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:29,360] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:29,360] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:29,371] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:29,371] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:29,382] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:29,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5-W400-G2400-E100-islandfiltered.bed [2023-10-10 15:06:29,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5-1-removed.bed [2023-10-10 15:06:29,391] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100.scoreisland [2023-10-10 15:06:29,393] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100.scoreisland [2023-10-10 15:06:29,394] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100.scoreisland [2023-10-10 15:06:29,398] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100.scoreisland [2023-10-10 15:06:29,398] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100.scoreisland [2023-10-10 15:06:29,656] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100.scoreisland [2023-10-10 15:06:29,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 15:06:29,702] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:29,705] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:29,706] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:29,712] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:29,712] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:29,712] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:29,712] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:29,712] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:29,712] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:29,712] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:29,712] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:29,713] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:29,713] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:36,701] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M5-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:37,166] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M5_read_SICER.out1 [2023-10-10 15:06:37,171] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M5_read_SICER.out1 [2023-10-10 15:06:37,171] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M5_read_SICER.out1 [2023-10-10 15:06:37,179] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M5_read_SICER.out1 [2023-10-10 15:06:37,179] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M5_read_SICER.out1 [2023-10-10 15:06:37,179] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M5_read_SICER.out1 [2023-10-10 15:06:37,179] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M5_read_SICER.out1 [2023-10-10 15:06:37,180] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M5_read_SICER.out1 [2023-10-10 15:06:37,180] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M5_read_SICER.out1 [2023-10-10 15:06:37,180] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M5_read_SICER.out1 [2023-10-10 15:06:37,456] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M5_read_SICER.out1 [2023-10-10 15:06:37,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5-W400-G2400-E100.scoreisland_common.bed [2023-10-10 15:06:37,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:06:37,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:37,510] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:37,522] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 15:06:37,522] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 15:06:37,522] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:06:37,522] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 15:06:37,554] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-10-10 15:06:37,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-10-10 15:06:37,558] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-10-10 15:06:37,566] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-10-10 15:06:37,587] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-10-10 15:06:37,593] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: run.sh [2023-10-10 15:06:37,595] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: run.sh [2023-10-10 15:06:37,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: run.sh [2023-10-10 15:06:37,614] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_compact.R [2023-10-10 15:06:37,617] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_compact.R [2023-10-10 15:06:37,638] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_detailed.R [2023-10-10 15:06:37,641] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_detailed.R [2023-10-10 15:06:37,649] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: process_output_detailed.R [2023-10-10 15:06:37,667] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_CKDL230032530-1A_H77VKDSX7_L3_R1.fastq.gz [2023-10-10 15:06:37,669] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_CKDL230032530-1A_H77VKDSX7_L3_R2.fastq.gz [2023-10-10 15:06:37,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_alignments.bam.bai [2023-10-10 15:06:37,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_sorted_mapped.bam.bai [2023-10-10 15:06:37,671] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_alignments.bam [2023-10-10 15:06:37,700] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_sorted_mapped.bam [2023-10-10 15:06:37,706] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:06:37,708] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:06:37,708] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:06:37,712] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:06:37,712] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:06:37,712] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:06:37,712] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:06:37,713] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:06:37,713] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:06:37,713] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:06:37,713] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:06:37,734] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:06:38,909] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:06:38,972] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_StrgtPksRm_tab.bed [2023-10-10 15:06:38,972] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_filtered_StrgtPks_sorted.bam.bai [2023-10-10 15:06:38,972] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_StrgtPks_tab.bed [2023-10-10 15:06:38,973] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_filtered_StrgtPks.bam.bai [2023-10-10 15:06:38,973] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_filtered_StrgtPks_sorted.bam [2023-10-10 15:06:38,973] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_filtered_StrgtPks.bam [2023-10-10 15:06:39,043] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M8_read_SICER.out1 [2023-10-10 15:06:39,048] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M8_read_SICER.out1 [2023-10-10 15:06:39,049] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8_read_SICER.out1 [2023-10-10 15:06:39,055] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M8_read_SICER.out1 [2023-10-10 15:06:39,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8_read_SICER.out1 [2023-10-10 15:06:39,055] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M8_read_SICER.out1 [2023-10-10 15:06:39,055] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M8_read_SICER.out1 [2023-10-10 15:06:39,055] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M8_read_SICER.out1 [2023-10-10 15:06:39,055] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M8_read_SICER.out1 [2023-10-10 15:06:39,055] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M8_read_SICER.out1 [2023-10-10 15:06:39,450] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8_read_SICER.out1 [2023-10-10 15:06:39,503] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:39,507] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:39,507] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:39,513] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:39,513] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:39,513] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:39,513] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:39,513] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:39,513] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:39,513] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:39,514] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:39,514] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:39,514] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:49,434] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:50,043] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland [2023-10-10 15:06:50,048] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland [2023-10-10 15:06:50,049] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland [2023-10-10 15:06:50,056] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland [2023-10-10 15:06:50,056] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland [2023-10-10 15:06:50,056] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland [2023-10-10 15:06:50,057] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland [2023-10-10 15:06:50,057] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland [2023-10-10 15:06:50,057] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland [2023-10-10 15:06:50,057] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland [2023-10-10 15:06:50,404] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland [2023-10-10 15:06:50,424] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8-1-removed.bed [2023-10-10 15:06:50,424] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8-W400-G2400-E100-islandfiltered.bed [2023-10-10 15:06:50,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 15:06:50,430] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:50,434] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:50,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:50,438] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:50,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:50,444] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:50,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 15:06:50,446] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 15:06:50,446] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:06:50,453] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:50,458] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:50,475] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 15:06:50,475] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:06:50,476] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8-W400-G2400-E100.scoreisland_common.bed [2023-10-10 15:06:50,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_narrow_MACS2_summits.bed [2023-10-10 15:06:50,532] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M8_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:50,535] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M8_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:50,536] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:50,541] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M8_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:50,541] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:50,628] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:06:50,655] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:50,659] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:50,660] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:50,665] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:50,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:50,805] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.broadPeak [2023-10-10 15:06:50,823] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:50,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:50,826] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:50,831] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:50,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:50,844] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:06:50,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_broad_MACS2_peaks.broadPeak.bed [2023-10-10 15:06:50,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:06:50,870] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:50,874] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:50,875] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:50,883] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:50,884] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:50,884] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:50,884] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:50,884] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:50,884] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:50,884] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:51,054] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8_broad_MACS2_peaks.gappedPeak [2023-10-10 15:06:51,069] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M8_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:51,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M8_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:51,071] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:51,076] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:51,082] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:06:51,100] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M8_read_MACS2_peaks.out1 [2023-10-10 15:06:51,103] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M8_read_MACS2_peaks.out1 [2023-10-10 15:06:51,103] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8_read_MACS2_peaks.out1 [2023-10-10 15:06:51,108] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M8_read_MACS2_peaks.out1 [2023-10-10 15:06:51,108] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8_read_MACS2_peaks.out1 [2023-10-10 15:06:51,194] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8_read_MACS2_peaks.out1 [2023-10-10 15:06:51,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:06:51,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:51,206] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:51,218] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 15:06:51,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 15:06:51,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:06:51,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 15:06:51,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 15:06:51,220] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_hist.pdf [2023-10-10 15:06:51,236] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M8_metrics [2023-10-10 15:06:51,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M8_metrics [2023-10-10 15:06:51,239] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8_metrics [2023-10-10 15:06:51,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8_metrics [2023-10-10 15:06:51,275] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8_metrics [2023-10-10 15:06:51,282] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_CKDL230032530-1A_H77VKDSX7_L3_R1.fastq.gz [2023-10-10 15:06:51,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_CKDL230032530-1A_H77VKDSX7_L3_R2.fastq.gz [2023-10-10 15:06:51,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_alignments.bam [2023-10-10 15:06:51,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_sorted_mapped.bam [2023-10-10 15:06:51,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_alignments.bam.bai [2023-10-10 15:06:51,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_sorted_mapped.bam.bai [2023-10-10 15:06:51,314] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11-1-removed.bed [2023-10-10 15:06:51,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:51,368] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:51,368] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:51,374] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:51,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:51,382] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100.scoreisland.bb [2023-10-10 15:06:51,419] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M11_read_SICER.out1 [2023-10-10 15:06:51,423] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M11_read_SICER.out1 [2023-10-10 15:06:51,423] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M11_read_SICER.out1 [2023-10-10 15:06:51,430] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M11_read_SICER.out1 [2023-10-10 15:06:51,430] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M11_read_SICER.out1 [2023-10-10 15:06:51,430] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M11_read_SICER.out1 [2023-10-10 15:06:51,430] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M11_read_SICER.out1 [2023-10-10 15:06:51,430] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M11_read_SICER.out1 [2023-10-10 15:06:51,430] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M11_read_SICER.out1 [2023-10-10 15:06:51,430] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M11_read_SICER.out1 [2023-10-10 15:06:51,676] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M11_read_SICER.out1 [2023-10-10 15:06:51,745] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:51,750] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:51,751] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:51,757] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:51,757] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:51,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:51,757] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:51,757] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:51,757] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:51,757] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:51,758] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:51,758] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:51,758] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:58,799] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:06:59,222] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 15:06:59,223] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11-W400-G2400-E100-islandfiltered.bed [2023-10-10 15:06:59,229] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100.scoreisland [2023-10-10 15:06:59,231] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100.scoreisland [2023-10-10 15:06:59,232] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100.scoreisland [2023-10-10 15:06:59,236] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100.scoreisland [2023-10-10 15:06:59,236] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100.scoreisland [2023-10-10 15:06:59,475] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M11-W400-G2400-E100.scoreisland [2023-10-10 15:06:59,487] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 15:06:59,487] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:06:59,487] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 15:06:59,492] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:59,495] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:06:59,508] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:06:59,508] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11-W400-G2400-E100.scoreisland_common.bed [2023-10-10 15:06:59,508] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 15:06:59,513] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:06:59,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:06:59,516] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:06:59,520] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:06:59,520] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:06:59,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:06:59,520] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:06:59,520] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:06:59,520] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:06:59,520] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:06:59,520] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:06:59,541] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:07:00,643] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:07:00,703] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_filtered_StrgtPks_sorted.bam [2023-10-10 15:07:00,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_StrgtPksRm_tab.bed [2023-10-10 15:07:00,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_StrgtPks_tab.bed [2023-10-10 15:07:00,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_filtered_StrgtPks_sorted.bam.bai [2023-10-10 15:07:00,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_filtered_StrgtPks.bam.bai [2023-10-10 15:07:00,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_filtered_StrgtPks.bam [2023-10-10 15:07:00,754] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:00,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:00,759] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:00,764] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:00,765] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:00,765] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:00,765] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:00,765] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:00,765] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:00,765] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:00,972] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:00,988] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M11_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:00,991] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M11_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:00,991] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M11_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:00,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M11_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:01,005] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M11_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:01,008] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_broad_MACS2_peaks.broadPeak.bed [2023-10-10 15:07:01,021] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M11_read_MACS2_peaks.out1 [2023-10-10 15:07:01,023] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M11_read_MACS2_peaks.out1 [2023-10-10 15:07:01,023] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M11_read_MACS2_peaks.out1 [2023-10-10 15:07:01,028] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M11_read_MACS2_peaks.out1 [2023-10-10 15:07:01,028] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M11_read_MACS2_peaks.out1 [2023-10-10 15:07:01,080] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M11_read_MACS2_peaks.out1 [2023-10-10 15:07:01,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:07:01,117] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:01,120] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:01,120] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:01,126] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:01,126] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:01,134] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:01,148] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M11_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:01,150] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M11_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:01,151] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M11_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:01,155] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M11_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:01,155] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M11_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:01,204] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M11_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:01,260] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:01,265] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:01,266] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:01,274] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:01,274] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:01,274] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:01,274] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:01,275] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:01,275] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:01,275] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:01,499] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M11_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:01,512] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_narrow_MACS2_summits.bed [2023-10-10 15:07:01,512] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 15:07:01,512] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:07:01,517] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:01,520] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:01,535] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 15:07:01,535] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:07:01,536] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 15:07:01,536] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 15:07:01,536] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_hist.pdf [2023-10-10 15:07:01,555] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M11_metrics [2023-10-10 15:07:01,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M11_metrics [2023-10-10 15:07:01,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M11_metrics [2023-10-10 15:07:01,565] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M11_metrics [2023-10-10 15:07:01,586] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M11_metrics [2023-10-10 15:07:01,594] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_CKDL230032530-1A_H77VKDSX7_L3_R1.fastq.gz [2023-10-10 15:07:01,597] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_CKDL230032530-1A_H77VKDSX7_L3_R2.fastq.gz [2023-10-10 15:07:01,621] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_alignments.bam [2023-10-10 15:07:01,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_sorted_mapped.bam [2023-10-10 15:07:01,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_sorted_mapped.bam.bai [2023-10-10 15:07:01,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_alignments.bam.bai [2023-10-10 15:07:01,629] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:01,631] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:01,632] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:01,636] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:01,636] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:01,636] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:01,636] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:01,636] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:01,636] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:01,636] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:01,636] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:01,663] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:02,769] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:02,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_filtered_StrgtPks.bam [2023-10-10 15:07:02,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_filtered_StrgtPks.bam.bai [2023-10-10 15:07:02,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_StrgtPksRm_tab.bed [2023-10-10 15:07:02,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_StrgtPks_tab.bed [2023-10-10 15:07:02,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_filtered_StrgtPks_sorted.bam.bai [2023-10-10 15:07:02,830] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_filtered_StrgtPks_sorted.bam [2023-10-10 15:07:02,830] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_hist.pdf [2023-10-10 15:07:02,861] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M16_metrics [2023-10-10 15:07:02,865] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M16_metrics [2023-10-10 15:07:02,865] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M16_metrics [2023-10-10 15:07:02,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M16_metrics [2023-10-10 15:07:02,889] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M16_metrics [2023-10-10 15:07:02,914] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:02,918] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:02,919] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:02,924] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:02,924] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:02,925] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:02,925] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:02,925] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:02,925] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:02,925] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:02,925] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:02,935] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:03,359] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:03,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:03,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:03,418] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:03,424] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:03,424] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:03,425] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:03,425] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:03,425] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:03,425] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:03,425] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:03,425] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:03,437] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:03,743] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:03,792] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:03,797] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:03,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:03,803] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:03,803] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:03,803] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:03,803] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:03,803] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:03,803] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:03,803] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:03,804] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:03,814] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:04,293] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:04,320] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_broad_MACS2_peaks.broadPeak.bed [2023-10-10 15:07:04,348] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M16_read_MACS2_peaks.out1 [2023-10-10 15:07:04,357] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M16_read_MACS2_peaks.out1 [2023-10-10 15:07:04,358] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M16_read_MACS2_peaks.out1 [2023-10-10 15:07:04,365] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M16_read_MACS2_peaks.out1 [2023-10-10 15:07:04,365] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M16_read_MACS2_peaks.out1 [2023-10-10 15:07:04,365] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M16_read_MACS2_peaks.out1 [2023-10-10 15:07:04,365] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M16_read_MACS2_peaks.out1 [2023-10-10 15:07:04,366] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M16_read_MACS2_peaks.out1 [2023-10-10 15:07:04,366] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M16_read_MACS2_peaks.out1 [2023-10-10 15:07:04,366] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M16_read_MACS2_peaks.out1 [2023-10-10 15:07:04,676] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M16_read_MACS2_peaks.out1 [2023-10-10 15:07:04,700] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:07:04,706] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:04,708] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:04,708] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:04,713] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:04,713] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:04,721] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M16_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:04,727] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:04,729] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:04,729] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:04,733] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:04,733] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:04,742] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M16_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:04,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_narrow_MACS2_summits.bed [2023-10-10 15:07:04,767] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:07:04,772] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:04,776] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:04,792] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 15:07:04,792] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 15:07:04,792] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 15:07:04,792] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:07:04,792] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 15:07:04,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16-1-removed.bed [2023-10-10 15:07:04,827] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:04,831] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:04,831] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:04,838] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:04,838] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:04,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:04,838] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:04,838] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:04,838] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:04,838] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:04,839] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:04,839] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:04,839] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:16,257] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:16,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16-W400-G2400-E100-islandfiltered.bed [2023-10-10 15:07:16,926] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland [2023-10-10 15:07:16,930] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland [2023-10-10 15:07:16,931] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland [2023-10-10 15:07:16,937] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland [2023-10-10 15:07:16,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland [2023-10-10 15:07:16,937] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland [2023-10-10 15:07:16,937] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland [2023-10-10 15:07:16,937] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland [2023-10-10 15:07:16,937] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland [2023-10-10 15:07:16,937] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland [2023-10-10 15:07:17,434] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland [2023-10-10 15:07:17,463] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 15:07:17,480] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:17,483] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:17,484] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:17,489] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:17,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:17,496] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M16-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:17,543] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M16_read_SICER.out1 [2023-10-10 15:07:17,546] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M16_read_SICER.out1 [2023-10-10 15:07:17,547] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M16_read_SICER.out1 [2023-10-10 15:07:17,552] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M16_read_SICER.out1 [2023-10-10 15:07:17,553] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M16_read_SICER.out1 [2023-10-10 15:07:17,553] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M16_read_SICER.out1 [2023-10-10 15:07:17,553] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M16_read_SICER.out1 [2023-10-10 15:07:17,553] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M16_read_SICER.out1 [2023-10-10 15:07:17,553] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M16_read_SICER.out1 [2023-10-10 15:07:17,553] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M16_read_SICER.out1 [2023-10-10 15:07:17,553] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M16_read_SICER.out1 [2023-10-10 15:07:17,564] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M16_read_SICER.out1 [2023-10-10 15:07:18,097] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M16_read_SICER.out1 [2023-10-10 15:07:18,126] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 15:07:18,126] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:07:18,126] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 15:07:18,138] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:18,141] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:18,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16-W400-G2400-E100.scoreisland_common.bed [2023-10-10 15:07:18,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:07:18,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 15:07:18,173] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_CKDL230032530-1A_H77VKDSX7_L3_R1.fastq.gz [2023-10-10 15:07:18,177] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_CKDL230032530-1A_H77VKDSX7_L3_R2.fastq.gz [2023-10-10 15:07:18,177] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_sorted_mapped.bam.bai [2023-10-10 15:07:18,181] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_sorted_mapped.bam [2023-10-10 15:07:18,209] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_alignments.bam [2023-10-10 15:07:18,209] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_alignments.bam.bai [2023-10-10 15:07:18,244] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100.scoreisland [2023-10-10 15:07:18,247] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100.scoreisland [2023-10-10 15:07:18,247] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100.scoreisland [2023-10-10 15:07:18,251] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100.scoreisland [2023-10-10 15:07:18,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100.scoreisland [2023-10-10 15:07:18,536] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100.scoreisland [2023-10-10 15:07:18,551] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7-1-removed.bed [2023-10-10 15:07:18,551] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 15:07:18,587] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:18,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:18,591] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:18,597] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:18,597] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:18,597] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:18,597] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:18,597] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:18,597] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:18,597] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:18,598] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:18,598] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:18,598] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:30,405] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:31,112] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7-W400-G2400-E100-islandfiltered.bed [2023-10-10 15:07:31,119] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:31,121] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:31,121] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:31,126] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:31,126] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:31,133] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M7-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:31,161] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M7_read_SICER.out1 [2023-10-10 15:07:31,166] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M7_read_SICER.out1 [2023-10-10 15:07:31,166] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M7_read_SICER.out1 [2023-10-10 15:07:31,173] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M7_read_SICER.out1 [2023-10-10 15:07:31,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M7_read_SICER.out1 [2023-10-10 15:07:31,173] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M7_read_SICER.out1 [2023-10-10 15:07:31,173] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M7_read_SICER.out1 [2023-10-10 15:07:31,173] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M7_read_SICER.out1 [2023-10-10 15:07:31,173] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M7_read_SICER.out1 [2023-10-10 15:07:31,173] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M7_read_SICER.out1 [2023-10-10 15:07:31,464] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M7_read_SICER.out1 [2023-10-10 15:07:31,480] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:07:31,480] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 15:07:31,486] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:31,488] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:31,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7-W400-G2400-E100.scoreisland_common.bed [2023-10-10 15:07:31,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 15:07:31,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:07:31,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 15:07:31,508] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:07:31,510] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:07:31,510] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:07:31,515] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:07:31,515] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:07:31,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:07:31,516] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:07:31,516] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:07:31,516] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:07:31,516] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:07:31,516] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:07:31,536] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:07:32,650] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:07:32,716] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_filtered_StrgtPks.bam.bai [2023-10-10 15:07:32,717] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_StrgtPks_tab.bed [2023-10-10 15:07:32,717] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_filtered_StrgtPks_sorted.bam [2023-10-10 15:07:32,717] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_filtered_StrgtPks.bam [2023-10-10 15:07:32,717] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_filtered_StrgtPks_sorted.bam.bai [2023-10-10 15:07:32,717] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_StrgtPksRm_tab.bed [2023-10-10 15:07:32,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M7_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:32,744] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M7_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:32,744] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M7_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:32,750] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M7_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:32,750] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M7_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:32,815] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M7_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:32,847] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:32,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:32,852] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:32,859] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:32,859] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:32,859] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:32,859] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:32,859] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:32,860] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:32,860] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:33,105] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:33,119] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:07:33,119] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_narrow_MACS2_summits.bed [2023-10-10 15:07:33,126] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:33,134] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:33,134] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:33,138] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:33,138] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:33,146] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:33,147] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_broad_MACS2_peaks.broadPeak.bed [2023-10-10 15:07:33,153] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M7_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:33,155] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M7_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:33,155] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M7_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:33,159] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M7_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:33,166] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M7_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:33,198] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:33,202] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:33,202] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:33,209] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:33,209] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:33,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:33,209] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:33,209] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:33,209] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:33,209] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:33,210] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:33,215] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:33,478] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M7_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:33,536] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M7_read_MACS2_peaks.out1 [2023-10-10 15:07:33,541] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M7_read_MACS2_peaks.out1 [2023-10-10 15:07:33,541] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M7_read_MACS2_peaks.out1 [2023-10-10 15:07:33,547] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M7_read_MACS2_peaks.out1 [2023-10-10 15:07:33,547] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M7_read_MACS2_peaks.out1 [2023-10-10 15:07:33,611] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M7_read_MACS2_peaks.out1 [2023-10-10 15:07:33,615] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 15:07:33,615] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:07:33,616] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 15:07:33,620] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:33,623] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:33,636] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 15:07:33,636] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:07:33,636] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 15:07:33,637] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_hist.pdf [2023-10-10 15:07:33,654] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M7_metrics [2023-10-10 15:07:33,657] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M7_metrics [2023-10-10 15:07:33,657] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M7_metrics [2023-10-10 15:07:33,662] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M7_metrics [2023-10-10 15:07:33,678] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M7_metrics [2023-10-10 15:07:33,686] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_CKDL230032530-1A_H77VKDSX7_L3_R2.fastq.gz [2023-10-10 15:07:33,689] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_CKDL230032530-1A_H77VKDSX7_L3_R1.fastq.gz [2023-10-10 15:07:33,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_alignments.bam.bai [2023-10-10 15:07:33,710] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_alignments.bam [2023-10-10 15:07:33,711] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_sorted_mapped.bam [2023-10-10 15:07:33,711] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_sorted_mapped.bam.bai [2023-10-10 15:07:33,716] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:07:33,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:07:33,719] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:07:33,725] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:07:33,725] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:07:33,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:07:33,726] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:07:33,726] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:07:33,726] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:07:33,726] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:07:33,726] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:07:33,750] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:07:34,862] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:07:34,929] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_StrgtPks_tab.bed [2023-10-10 15:07:34,929] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_filtered_StrgtPks_sorted.bam.bai [2023-10-10 15:07:34,929] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_filtered_StrgtPks.bam.bai [2023-10-10 15:07:34,929] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_filtered_StrgtPks.bam [2023-10-10 15:07:34,930] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_StrgtPksRm_tab.bed [2023-10-10 15:07:34,930] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_filtered_StrgtPks_sorted.bam [2023-10-10 15:07:34,930] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13-W400-G2400-E100-islandfiltered.bed [2023-10-10 15:07:34,956] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland [2023-10-10 15:07:34,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland [2023-10-10 15:07:34,959] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland [2023-10-10 15:07:34,963] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland [2023-10-10 15:07:34,963] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland [2023-10-10 15:07:34,964] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland [2023-10-10 15:07:34,964] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland [2023-10-10 15:07:34,964] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland [2023-10-10 15:07:34,964] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland [2023-10-10 15:07:34,964] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland [2023-10-10 15:07:35,439] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland [2023-10-10 15:07:35,504] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M13_read_SICER.out1 [2023-10-10 15:07:35,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M13_read_SICER.out1 [2023-10-10 15:07:35,509] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M13_read_SICER.out1 [2023-10-10 15:07:35,515] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M13_read_SICER.out1 [2023-10-10 15:07:35,515] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M13_read_SICER.out1 [2023-10-10 15:07:35,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M13_read_SICER.out1 [2023-10-10 15:07:35,515] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M13_read_SICER.out1 [2023-10-10 15:07:35,515] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M13_read_SICER.out1 [2023-10-10 15:07:35,515] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M13_read_SICER.out1 [2023-10-10 15:07:35,515] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M13_read_SICER.out1 [2023-10-10 15:07:35,516] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M13_read_SICER.out1 [2023-10-10 15:07:35,527] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M13_read_SICER.out1 [2023-10-10 15:07:36,032] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M13_read_SICER.out1 [2023-10-10 15:07:36,066] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 15:07:36,071] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:36,074] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:36,074] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:36,079] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:36,079] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:36,086] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M13-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:36,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13-1-removed.bed [2023-10-10 15:07:36,088] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:07:36,088] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 15:07:36,093] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:36,095] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:36,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 15:07:36,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 15:07:36,111] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:07:36,111] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13-W400-G2400-E100.scoreisland_common.bed [2023-10-10 15:07:36,114] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:07:36,121] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:36,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:36,123] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:36,127] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:36,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:36,134] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:36,188] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:36,193] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:36,193] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:36,200] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:36,200] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:36,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:36,200] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:36,200] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:36,201] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:36,201] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:36,201] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:36,216] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:36,921] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:36,965] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:36,967] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:36,967] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:36,972] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:36,972] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:36,979] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:37,013] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:37,017] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:37,017] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:37,022] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:37,023] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:37,023] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:37,023] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:37,023] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:37,023] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:37,023] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:37,023] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:37,035] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:37,638] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M13_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:37,703] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_narrow_MACS2_summits.bed [2023-10-10 15:07:37,734] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M13_read_MACS2_peaks.out1 [2023-10-10 15:07:37,738] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M13_read_MACS2_peaks.out1 [2023-10-10 15:07:37,739] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M13_read_MACS2_peaks.out1 [2023-10-10 15:07:37,746] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M13_read_MACS2_peaks.out1 [2023-10-10 15:07:37,746] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M13_read_MACS2_peaks.out1 [2023-10-10 15:07:37,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M13_read_MACS2_peaks.out1 [2023-10-10 15:07:37,746] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M13_read_MACS2_peaks.out1 [2023-10-10 15:07:37,746] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M13_read_MACS2_peaks.out1 [2023-10-10 15:07:37,746] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M13_read_MACS2_peaks.out1 [2023-10-10 15:07:37,746] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M13_read_MACS2_peaks.out1 [2023-10-10 15:07:37,746] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M13_read_MACS2_peaks.out1 [2023-10-10 15:07:37,758] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M13_read_MACS2_peaks.out1 [2023-10-10 15:07:38,299] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M13_read_MACS2_peaks.out1 [2023-10-10 15:07:38,336] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_broad_MACS2_peaks.broadPeak.bed [2023-10-10 15:07:38,367] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:38,371] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:38,372] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:38,378] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:38,378] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:38,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:38,379] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:38,379] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:38,379] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:38,379] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:38,379] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:38,395] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:39,194] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M13_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:39,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 15:07:39,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 15:07:39,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:07:39,245] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:39,248] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:39,261] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:07:39,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 15:07:39,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 15:07:39,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_hist.pdf [2023-10-10 15:07:39,286] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M13_metrics [2023-10-10 15:07:39,289] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M13_metrics [2023-10-10 15:07:39,289] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M13_metrics [2023-10-10 15:07:39,296] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M13_metrics [2023-10-10 15:07:39,312] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M13_metrics [2023-10-10 15:07:39,380] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: index [2023-10-10 15:07:39,384] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: index [2023-10-10 15:07:39,385] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: index [2023-10-10 15:07:39,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: index [2023-10-10 15:07:39,405] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: index [2023-10-10 15:07:39,536] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-10-10 15:07:39,539] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-10-10 15:07:39,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-10-10 15:07:39,561] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-commit.sample [2023-10-10 15:07:39,564] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-commit.sample [2023-10-10 15:07:39,583] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: update.sample [2023-10-10 15:07:39,585] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: update.sample [2023-10-10 15:07:39,590] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: update.sample [2023-10-10 15:07:39,633] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-push.sample [2023-10-10 15:07:39,635] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-push.sample [2023-10-10 15:07:39,689] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-rebase.sample [2023-10-10 15:07:39,692] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pre-rebase.sample [2023-10-10 15:07:39,692] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-rebase.sample [2023-10-10 15:07:39,698] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pre-rebase.sample [2023-10-10 15:07:39,716] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pre-rebase.sample [2023-10-10 15:07:39,722] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: prepare-commit-msg.sample [2023-10-10 15:07:39,725] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: prepare-commit-msg.sample [2023-10-10 15:07:39,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 15:07:39,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 15:07:39,881] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 15:07:39,887] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 15:07:39,887] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 15:07:39,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 15:07:39,888] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 15:07:39,888] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 15:07:39,888] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 15:07:39,888] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 15:07:39,888] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 15:07:39,888] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 15:07:39,888] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 15:07:39,896] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 15:07:39,903] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.idx [2023-10-10 15:07:39,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.idx [2023-10-10 15:07:39,905] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.idx [2023-10-10 15:07:39,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.idx [2023-10-10 15:07:39,923] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.idx [2023-10-10 15:07:39,952] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_CKDL230032530-1A_H77VKDSX7_L3_R2.fastq.gz [2023-10-10 15:07:39,954] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_CKDL230032530-1A_H77VKDSX7_L3_R1.fastq.gz [2023-10-10 15:07:39,955] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_sorted_mapped.bam.bai [2023-10-10 15:07:39,955] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_sorted_mapped.bam [2023-10-10 15:07:39,956] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_alignments.bam.bai [2023-10-10 15:07:39,957] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_alignments.bam [2023-10-10 15:07:40,010] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M10_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:40,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M10_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:40,014] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M10_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:40,019] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M10_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:40,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M10_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:40,115] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M10_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:07:40,125] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M10_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:40,128] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M10_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:40,128] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M10_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:40,138] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M10_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:40,145] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M10_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:07:40,151] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:40,154] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:40,154] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:40,161] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:40,162] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:40,172] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:07:40,174] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_broad_MACS2_peaks.broadPeak.bed [2023-10-10 15:07:40,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:40,205] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:40,206] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:40,212] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:40,212] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:40,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:40,212] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:40,212] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:40,212] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:40,212] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:40,212] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:40,223] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:40,701] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.gappedPeak [2023-10-10 15:07:40,742] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M10_read_MACS2_peaks.out1 [2023-10-10 15:07:40,745] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M10_read_MACS2_peaks.out1 [2023-10-10 15:07:40,745] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M10_read_MACS2_peaks.out1 [2023-10-10 15:07:40,750] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M10_read_MACS2_peaks.out1 [2023-10-10 15:07:40,750] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M10_read_MACS2_peaks.out1 [2023-10-10 15:07:40,843] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M10_read_MACS2_peaks.out1 [2023-10-10 15:07:40,869] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:40,873] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:40,873] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:40,879] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:40,879] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:40,880] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:40,880] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:40,880] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:40,880] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:40,880] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:40,880] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:40,889] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:41,328] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M10_broad_MACS2_peaks.broadPeak [2023-10-10 15:07:41,353] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_narrow_MACS2_summits.bed [2023-10-10 15:07:41,354] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:07:41,379] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:07:41,385] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:41,387] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:41,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 15:07:41,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:07:41,402] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 15:07:41,402] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 15:07:41,403] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 15:07:41,415] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M10_read_SICER.out1 [2023-10-10 15:07:41,418] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M10_read_SICER.out1 [2023-10-10 15:07:41,418] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M10_read_SICER.out1 [2023-10-10 15:07:41,423] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M10_read_SICER.out1 [2023-10-10 15:07:41,424] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M10_read_SICER.out1 [2023-10-10 15:07:41,424] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M10_read_SICER.out1 [2023-10-10 15:07:41,424] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M10_read_SICER.out1 [2023-10-10 15:07:41,424] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M10_read_SICER.out1 [2023-10-10 15:07:41,424] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M10_read_SICER.out1 [2023-10-10 15:07:41,424] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M10_read_SICER.out1 [2023-10-10 15:07:41,727] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M10_read_SICER.out1 [2023-10-10 15:07:41,755] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100.scoreisland [2023-10-10 15:07:41,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100.scoreisland [2023-10-10 15:07:41,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100.scoreisland [2023-10-10 15:07:41,763] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100.scoreisland [2023-10-10 15:07:41,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100.scoreisland [2023-10-10 15:07:42,068] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100.scoreisland [2023-10-10 15:07:42,089] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10-1-removed.bed [2023-10-10 15:07:42,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 15:07:42,139] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:42,143] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:42,144] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:42,149] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:42,149] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:42,157] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100.scoreisland.bb [2023-10-10 15:07:42,158] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10-W400-G2400-E100-islandfiltered.bed [2023-10-10 15:07:42,257] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:42,261] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:42,262] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:42,269] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:42,269] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:42,269] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:42,269] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:42,269] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:42,269] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:42,269] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:42,269] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:42,365] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:46,694] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M10-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:07:46,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 15:07:46,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:07:46,964] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:46,967] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:07:46,987] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 15:07:46,988] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:07:46,989] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 15:07:46,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10-W400-G2400-E100.scoreisland_common.bed [2023-10-10 15:07:46,996] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:07:46,998] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:07:46,998] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:07:47,003] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:07:47,003] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:07:47,003] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:07:47,003] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:07:47,003] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:07:47,003] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:07:47,003] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:07:47,003] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:07:47,025] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:07:48,150] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:07:48,218] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_StrgtPks_tab.bed [2023-10-10 15:07:48,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_StrgtPksRm_tab.bed [2023-10-10 15:07:48,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_filtered_StrgtPks_sorted.bam [2023-10-10 15:07:48,220] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_filtered_StrgtPks.bam.bai [2023-10-10 15:07:48,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_filtered_StrgtPks_sorted.bam.bai [2023-10-10 15:07:48,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_filtered_StrgtPks.bam [2023-10-10 15:07:48,252] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M10_metrics [2023-10-10 15:07:48,256] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M10_metrics [2023-10-10 15:07:48,257] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M10_metrics [2023-10-10 15:07:48,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M10_metrics [2023-10-10 15:07:48,289] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M10_metrics [2023-10-10 15:07:48,291] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_hist.pdf [2023-10-10 15:07:48,300] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:48,305] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:48,312] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:48,336] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M5.o1963914 [2023-10-10 15:07:48,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M5.o1963914 [2023-10-10 15:07:48,342] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M5.o1963914 [2023-10-10 15:07:48,351] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M5.o1963914 [2023-10-10 15:07:48,366] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M5.o1963914 [2023-10-10 15:07:48,375] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_FASTQC.sh [2023-10-10 15:07:48,377] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_FASTQC.sh [2023-10-10 15:07:48,382] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_FASTQC.sh [2023-10-10 15:07:48,403] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M6.o1963915 [2023-10-10 15:07:48,406] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M6.o1963915 [2023-10-10 15:07:48,406] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M6.o1963915 [2023-10-10 15:07:48,412] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M6.o1963915 [2023-10-10 15:07:48,435] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M6.o1963915 [2023-10-10 15:07:48,443] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M7.o1963916 [2023-10-10 15:07:48,446] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M7.o1963916 [2023-10-10 15:07:48,446] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M7.o1963916 [2023-10-10 15:07:48,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M7.o1963916 [2023-10-10 15:07:48,464] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M7.o1963916 [2023-10-10 15:07:48,471] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M16.o1963924 [2023-10-10 15:07:48,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M16.o1963924 [2023-10-10 15:07:48,475] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M16.o1963924 [2023-10-10 15:07:48,480] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M16.o1963924 [2023-10-10 15:07:48,492] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M16.o1963924 [2023-10-10 15:07:48,500] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M11.o1963920 [2023-10-10 15:07:48,502] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern 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search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M8.o1963917 [2023-10-10 15:07:48,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M8.o1963917 [2023-10-10 15:07:48,557] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M8.o1963917 [2023-10-10 15:07:48,564] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M13.o1963922 [2023-10-10 15:07:48,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M13.o1963922 [2023-10-10 15:07:48,567] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M13.o1963922 [2023-10-10 15:07:48,573] multiqc [DEBUG ] File ignored by 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multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M15.o1963923 [2023-10-10 15:07:48,650] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M9.o1963918 [2023-10-10 15:07:48,652] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M9.o1963918 [2023-10-10 15:07:48,653] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M9.o1963918 [2023-10-10 15:07:48,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M9.o1963918 [2023-10-10 15:07:48,670] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M9.o1963918 [2023-10-10 15:07:48,678] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:48,681] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:48,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:48,702] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M10.o1963919 [2023-10-10 15:07:48,705] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M10.o1963919 [2023-10-10 15:07:48,705] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M10.o1963919 [2023-10-10 15:07:48,711] multiqc [DEBUG ] File ignored 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[DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2023-10-10 15:07:48,766] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2023-10-10 15:07:48,767] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2023-10-10 15:07:48,772] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2023-10-10 15:07:48,788] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2023-10-10 15:07:48,795] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M12.o1963921 [2023-10-10 15:07:48,798] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M12.o1963921 [2023-10-10 15:07:48,798] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M12.o1963921 [2023-10-10 15:07:48,803] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M12.o1963921 [2023-10-10 15:07:48,818] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G215_k4me1_k27ac_k9ac_G215M12.o1963921 [2023-10-10 15:07:48,861] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M5_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 15:07:48,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M5_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 15:07:48,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M9_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 15:07:49,051] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M9_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 15:07:49,052] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M9_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 15:07:49,101] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M9_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 15:07:49,122] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M9_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 15:07:49,125] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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because it exceeded search pattern filesize limit: G215M8_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 15:07:49,211] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 15:07:49,216] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M8_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 15:07:49,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 15:07:49,258] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 15:07:49,288] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M8_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 15:07:49,293] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M8_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 15:07:49,293] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 15:07:49,299] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M8_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 15:07:49,299] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 15:07:49,342] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 15:07:49,367] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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[2023-10-10 15:07:49,545] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M7_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 15:07:49,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M7_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 15:07:49,549] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M7_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 15:07:49,556] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M7_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 15:07:49,556] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M7_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 15:07:49,604] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 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by lima/summary because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M12.o1964056 [2023-10-10 15:07:50,994] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M12.o1964056 [2023-10-10 15:07:51,012] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M13.o1964057 [2023-10-10 15:07:51,016] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M13.o1964057 [2023-10-10 15:07:51,022] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M13.o1964057 [2023-10-10 15:07:51,038] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M7.o1964051 [2023-10-10 15:07:51,041] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M7.o1964051 [2023-10-10 15:07:51,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M7.o1964051 [2023-10-10 15:07:51,063] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M9.o1964053 [2023-10-10 15:07:51,066] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M9.o1964053 [2023-10-10 15:07:51,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M9.o1964053 [2023-10-10 15:07:51,102] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M5.o1964049 [2023-10-10 15:07:51,105] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M5.o1964049 [2023-10-10 15:07:51,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M5.o1964049 [2023-10-10 15:07:51,128] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Bowtie2.qsub [2023-10-10 15:07:51,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Bowtie2.qsub [2023-10-10 15:07:51,131] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Bowtie2.qsub [2023-10-10 15:07:51,136] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Bowtie2.qsub [2023-10-10 15:07:51,154] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Bowtie2.qsub [2023-10-10 15:07:51,162] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M10.o1964054 [2023-10-10 15:07:51,165] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M10.o1964054 [2023-10-10 15:07:51,170] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M10.o1964054 [2023-10-10 15:07:51,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Bowtie2.sh [2023-10-10 15:07:51,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_Bowtie2.sh [2023-10-10 15:07:51,207] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Bowtie2.sh [2023-10-10 15:07:51,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Bowtie2.sh [2023-10-10 15:07:51,224] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_Bowtie2.sh [2023-10-10 15:07:51,231] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M8.o1964052 [2023-10-10 15:07:51,233] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M8.o1964052 [2023-10-10 15:07:51,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M8.o1964052 [2023-10-10 15:07:51,254] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:51,257] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:51,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:51,278] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:51,280] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:51,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:51,309] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M6.o1964050 [2023-10-10 15:07:51,312] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M6.o1964050 [2023-10-10 15:07:51,317] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_04_G215_k4me1_k27ac_k9ac_G215M6.o1964050 [2023-10-10 15:07:51,333] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Bowtie2_Stats.txt [2023-10-10 15:07:51,336] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Bowtie2_Stats.txt [2023-10-10 15:07:51,354] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:51,357] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:51,362] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:51,383] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M12.o1964023 [2023-10-10 15:07:51,385] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M12.o1964023 [2023-10-10 15:07:51,411] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M7.o1964017 [2023-10-10 15:07:51,414] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M7.o1964017 [2023-10-10 15:07:51,438] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M8.o1964019 [2023-10-10 15:07:51,441] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M8.o1964019 [2023-10-10 15:07:51,460] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M5.o1964015 [2023-10-10 15:07:51,463] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M5.o1964015 [2023-10-10 15:07:51,483] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M9.o1964020 [2023-10-10 15:07:51,487] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M9.o1964020 [2023-10-10 15:07:51,523] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M16.o1964026 [2023-10-10 15:07:51,527] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M16.o1964026 [2023-10-10 15:07:51,547] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M13.o1964024 [2023-10-10 15:07:51,550] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M13.o1964024 [2023-10-10 15:07:51,569] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M10.o1964021 [2023-10-10 15:07:51,572] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M10.o1964021 [2023-10-10 15:07:51,592] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M15.o1964025 [2023-10-10 15:07:51,595] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M15.o1964025 [2023-10-10 15:07:51,660] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Read_Length.sh [2023-10-10 15:07:51,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Read_Length.sh [2023-10-10 15:07:51,669] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Read_Length.sh [2023-10-10 15:07:51,684] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:51,686] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:51,691] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:51,707] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:51,709] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:51,722] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:51,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:51,740] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:51,747] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Read_Length.qsub [2023-10-10 15:07:51,750] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Read_Length.qsub [2023-10-10 15:07:51,750] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Read_Length.qsub [2023-10-10 15:07:51,756] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Read_Length.qsub [2023-10-10 15:07:51,767] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Read_Length.qsub [2023-10-10 15:07:51,774] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M6.o1964016 [2023-10-10 15:07:51,777] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M6.o1964016 [2023-10-10 15:07:51,797] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M11.o1964022 [2023-10-10 15:07:51,799] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G215_k4me1_k27ac_k9ac_G215M11.o1964022 [2023-10-10 15:07:51,880] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Read_Length_Stats.txt [2023-10-10 15:07:51,883] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Read_Length_Stats.txt [2023-10-10 15:07:52,120] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:52,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:52,124] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:52,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:52,159] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:52,167] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M10.o1964247 [2023-10-10 15:07:52,170] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M10.o1964247 [2023-10-10 15:07:52,175] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M10.o1964247 [2023-10-10 15:07:52,195] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M6.o1964243 [2023-10-10 15:07:52,198] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M6.o1964243 [2023-10-10 15:07:52,203] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M6.o1964243 [2023-10-10 15:07:52,220] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M12.o1964249 [2023-10-10 15:07:52,223] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M12.o1964249 [2023-10-10 15:07:52,228] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M12.o1964249 [2023-10-10 15:07:52,253] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M5.o1964241 [2023-10-10 15:07:52,256] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M5.o1964241 [2023-10-10 15:07:52,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M5.o1964241 [2023-10-10 15:07:52,289] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M11.o1964248 [2023-10-10 15:07:52,292] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M11.o1964248 [2023-10-10 15:07:52,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M11.o1964248 [2023-10-10 15:07:52,318] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M13.o1964250 [2023-10-10 15:07:52,322] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M13.o1964250 [2023-10-10 15:07:52,327] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M13.o1964250 [2023-10-10 15:07:52,369] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M8.o1964245 [2023-10-10 15:07:52,372] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M8.o1964245 [2023-10-10 15:07:52,381] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M8.o1964245 [2023-10-10 15:07:52,416] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M9.o1964246 [2023-10-10 15:07:52,420] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M9.o1964246 [2023-10-10 15:07:52,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M9.o1964246 [2023-10-10 15:07:52,565] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: BAM_Count.qsub [2023-10-10 15:07:52,574] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: BAM_Count.qsub [2023-10-10 15:07:52,574] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: BAM_Count.qsub [2023-10-10 15:07:52,580] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: BAM_Count.qsub [2023-10-10 15:07:52,598] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: BAM_Count.qsub [2023-10-10 15:07:52,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M16.o1964253 [2023-10-10 15:07:52,608] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M16.o1964253 [2023-10-10 15:07:52,614] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M16.o1964253 [2023-10-10 15:07:52,670] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:52,679] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:52,684] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:52,701] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M15.o1964252 [2023-10-10 15:07:52,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M15.o1964252 [2023-10-10 15:07:52,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M15.o1964252 [2023-10-10 15:07:52,724] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:52,727] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:52,727] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:52,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:52,741] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:52,747] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M7.o1964244 [2023-10-10 15:07:52,750] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M7.o1964244 [2023-10-10 15:07:52,754] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G215_k4me1_k27ac_k9ac_G215M7.o1964244 [2023-10-10 15:07:52,785] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_BAM_Count.sh [2023-10-10 15:07:52,788] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_BAM_Count.sh [2023-10-10 15:07:52,796] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_BAM_Count.sh [2023-10-10 15:07:52,819] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Read_Counts.sh [2023-10-10 15:07:52,822] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Read_Counts.sh [2023-10-10 15:07:52,841] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Read_Counts.R [2023-10-10 15:07:52,844] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Chr_Read_Counts.R [2023-10-10 15:07:52,844] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Read_Counts.R [2023-10-10 15:07:52,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Chr_Read_Counts.R [2023-10-10 15:07:52,860] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Chr_Read_Counts.R [2023-10-10 15:07:53,233] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Chr_Read_Counts.pdf [2023-10-10 15:07:53,564] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2023-10-10 15:07:53,567] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2023-10-10 15:07:53,568] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2023-10-10 15:07:53,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2023-10-10 15:07:53,590] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2023-10-10 15:07:53,613] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2023-10-10 15:07:53,617] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2023-10-10 15:07:53,617] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2023-10-10 15:07:53,629] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2023-10-10 15:07:53,650] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2023-10-10 15:07:53,658] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-10-10 15:07:53,660] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-10-10 15:07:53,661] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-10-10 15:07:53,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-10-10 15:07:53,676] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-10-10 15:07:53,707] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Pipeline_Runtime.txt [2023-10-10 15:07:53,709] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Pipeline_Runtime.txt [2023-10-10 15:07:53,710] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Pipeline_Runtime.txt [2023-10-10 15:07:53,714] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Pipeline_Runtime.txt [2023-10-10 15:07:53,726] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Pipeline_Runtime.txt [2023-10-10 15:07:53,738] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:53,740] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:53,740] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:53,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:53,760] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:07:53,768] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2023-10-10 15:07:53,773] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2023-10-10 15:07:53,781] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2023-10-10 15:07:53,799] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M6.o1973455 [2023-10-10 15:07:53,801] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M6.o1973455 [2023-10-10 15:07:53,806] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M6.o1973455 [2023-10-10 15:07:53,822] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M12.o1973462 [2023-10-10 15:07:53,825] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M12.o1973462 [2023-10-10 15:07:53,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M12.o1973462 [2023-10-10 15:07:53,856] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M8.o1973457 [2023-10-10 15:07:53,860] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M8.o1973457 [2023-10-10 15:07:53,868] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M8.o1973457 [2023-10-10 15:07:53,886] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M15.o1973464 [2023-10-10 15:07:53,889] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M15.o1973464 [2023-10-10 15:07:53,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M15.o1973464 [2023-10-10 15:07:53,916] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M7.o1973456 [2023-10-10 15:07:53,920] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M7.o1973456 [2023-10-10 15:07:53,925] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M7.o1973456 [2023-10-10 15:07:53,951] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M13.o1973463 [2023-10-10 15:07:53,953] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M13.o1973463 [2023-10-10 15:07:53,958] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M13.o1973463 [2023-10-10 15:07:54,000] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-10-10 15:07:54,003] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-10-10 15:07:54,004] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-10-10 15:07:54,010] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-10-10 15:07:54,024] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-10-10 15:07:54,033] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:54,037] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:54,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:07:54,068] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M9.o1973458 [2023-10-10 15:07:54,071] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M9.o1973458 [2023-10-10 15:07:54,076] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M9.o1973458 [2023-10-10 15:07:54,092] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:54,094] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:54,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:07:54,116] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M16.o1973465 [2023-10-10 15:07:54,119] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M16.o1973465 [2023-10-10 15:07:54,124] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M16.o1973465 [2023-10-10 15:07:54,140] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M11.o1973461 [2023-10-10 15:07:54,142] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M11.o1973461 [2023-10-10 15:07:54,147] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M11.o1973461 [2023-10-10 15:07:54,175] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M10.o1973460 [2023-10-10 15:07:54,178] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M10.o1973460 [2023-10-10 15:07:54,183] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M10.o1973460 [2023-10-10 15:07:54,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M5.o1973454 [2023-10-10 15:07:54,206] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M5.o1973454 [2023-10-10 15:07:54,211] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k4me1_k27ac_k9ac_G215M5.o1973454 [2023-10-10 15:07:54,317] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-10-10 15:07:54,321] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-10-10 15:07:54,321] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-10-10 15:07:54,326] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-10-10 15:07:54,349] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-10-10 15:07:54,432] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:07:54,437] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:07:54,438] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:07:54,445] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:07:54,446] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:07:54,446] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:07:54,446] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:07:54,446] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:07:54,446] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:07:54,446] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:07:54,446] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:07:54,470] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:07:55,609] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:07:55,676] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:07:55,678] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:07:55,679] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:07:55,683] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:07:55,683] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:07:55,684] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:07:55,684] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:07:55,684] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:07:55,684] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:07:55,684] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:07:55,684] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:07:55,705] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:07:56,818] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M9_read_Peak_Union.out1 [2023-10-10 15:07:56,884] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:56,886] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:56,887] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:56,891] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:56,891] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:56,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:56,891] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:56,891] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:56,891] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:56,891] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:56,891] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:56,913] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:58,046] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M16_read_Peak_Union.out1 [2023-10-10 15:07:58,113] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:07:58,115] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:07:58,115] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:07:58,120] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:07:58,120] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:07:58,120] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:07:58,121] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:07:58,121] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:07:58,121] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:07:58,121] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:07:58,121] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:07:58,142] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:07:59,255] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M5_read_Peak_Union.out1 [2023-10-10 15:07:59,328] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:07:59,330] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:07:59,331] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:07:59,336] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:07:59,336] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:07:59,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:07:59,336] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:07:59,336] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:07:59,336] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:07:59,336] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:07:59,336] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:07:59,357] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:08:00,479] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M12_read_Peak_Union.out1 [2023-10-10 15:08:00,546] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:08:00,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:08:00,549] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:08:00,555] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:08:00,555] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:08:00,555] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:08:00,555] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:08:00,555] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:08:00,555] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:08:00,555] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:08:00,555] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:08:00,576] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:08:01,691] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M8_read_Peak_Union.out1 [2023-10-10 15:08:01,758] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:08:01,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:08:01,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:08:01,766] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:08:01,766] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:08:01,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:08:01,766] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:08:01,766] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:08:01,766] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:08:01,766] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:08:01,766] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:08:01,788] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:08:03,000] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M13_read_Peak_Union.out1 [2023-10-10 15:08:03,078] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:03,082] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:03,082] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:03,089] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:03,089] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:03,089] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:03,089] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:03,090] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:03,090] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:03,090] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:03,090] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:03,117] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:04,228] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:04,301] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:08:04,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:08:04,304] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:08:04,308] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:08:04,308] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:08:04,309] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:08:04,309] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:08:04,309] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:08:04,309] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:08:04,309] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:08:04,309] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:08:04,330] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:08:05,444] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M7_read_Peak_Union.out1 [2023-10-10 15:08:05,510] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:08:05,512] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:08:05,513] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:08:05,517] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:08:05,518] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:08:05,518] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:08:05,518] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:08:05,518] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:08:05,518] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:08:05,518] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:08:05,518] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:08:05,539] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:08:06,647] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M11_read_Peak_Union.out1 [2023-10-10 15:08:06,719] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:08:06,722] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:08:06,722] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:08:06,728] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:08:06,728] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:08:06,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:08:06,728] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:08:06,728] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:08:06,728] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:08:06,728] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:08:06,729] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:08:06,752] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:08:07,876] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M10_read_Peak_Union.out1 [2023-10-10 15:08:07,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-10-10 15:08:07,944] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:07,946] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:07,946] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:07,951] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:07,961] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:07,967] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M10.o1965993 [2023-10-10 15:08:07,970] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M10.o1965993 [2023-10-10 15:08:07,970] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M10.o1965993 [2023-10-10 15:08:07,975] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M10.o1965993 [2023-10-10 15:08:07,990] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M10.o1965993 [2023-10-10 15:08:07,997] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M15.o1966001 [2023-10-10 15:08:08,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M15.o1966001 [2023-10-10 15:08:08,000] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M15.o1966001 [2023-10-10 15:08:08,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M15.o1966001 [2023-10-10 15:08:08,029] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M15.o1966001 [2023-10-10 15:08:08,035] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M7.o1965987 [2023-10-10 15:08:08,038] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M7.o1965987 [2023-10-10 15:08:08,039] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M7.o1965987 [2023-10-10 15:08:08,043] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M7.o1965987 [2023-10-10 15:08:08,053] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M7.o1965987 [2023-10-10 15:08:08,059] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M12.o1965997 [2023-10-10 15:08:08,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M12.o1965997 [2023-10-10 15:08:08,062] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M12.o1965997 [2023-10-10 15:08:08,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M12.o1965997 [2023-10-10 15:08:08,076] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M12.o1965997 [2023-10-10 15:08:08,089] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M5.o1965983 [2023-10-10 15:08:08,091] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M5.o1965983 [2023-10-10 15:08:08,092] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M5.o1965983 [2023-10-10 15:08:08,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M5.o1965983 [2023-10-10 15:08:08,106] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M5.o1965983 [2023-10-10 15:08:08,112] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M6.o1965985 [2023-10-10 15:08:08,115] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M6.o1965985 [2023-10-10 15:08:08,115] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M6.o1965985 [2023-10-10 15:08:08,119] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M6.o1965985 [2023-10-10 15:08:08,130] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M6.o1965985 [2023-10-10 15:08:08,136] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M11.o1965995 [2023-10-10 15:08:08,139] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M11.o1965995 [2023-10-10 15:08:08,139] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M11.o1965995 [2023-10-10 15:08:08,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M11.o1965995 [2023-10-10 15:08:08,154] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M11.o1965995 [2023-10-10 15:08:08,161] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M8.o1965989 [2023-10-10 15:08:08,164] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M8.o1965989 [2023-10-10 15:08:08,164] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M8.o1965989 [2023-10-10 15:08:08,169] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M8.o1965989 [2023-10-10 15:08:08,178] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M8.o1965989 [2023-10-10 15:08:08,215] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:08:08,219] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:08:08,224] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:08:08,239] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-10-10 15:08:08,242] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-10-10 15:08:08,246] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-10-10 15:08:08,260] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M9.o1965991 [2023-10-10 15:08:08,263] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M9.o1965991 [2023-10-10 15:08:08,263] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M9.o1965991 [2023-10-10 15:08:08,268] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M9.o1965991 [2023-10-10 15:08:08,278] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M9.o1965991 [2023-10-10 15:08:08,284] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-10-10 15:08:08,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-10-10 15:08:08,288] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-10-10 15:08:08,292] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-10-10 15:08:08,311] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-10-10 15:08:08,317] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:08,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:08,320] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:08,325] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:08,334] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:08,341] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M16.o1966003 [2023-10-10 15:08:08,344] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M16.o1966003 [2023-10-10 15:08:08,345] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M16.o1966003 [2023-10-10 15:08:08,352] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M16.o1966003 [2023-10-10 15:08:08,368] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M16.o1966003 [2023-10-10 15:08:08,375] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M13.o1965999 [2023-10-10 15:08:08,377] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M13.o1965999 [2023-10-10 15:08:08,378] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M13.o1965999 [2023-10-10 15:08:08,384] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M13.o1965999 [2023-10-10 15:08:08,396] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G215_k4me1_k27ac_k9ac_G215M13.o1965999 [2023-10-10 15:08:08,432] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2023-10-10 15:08:08,437] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:08,440] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:08,440] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:08,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:08,455] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:08,482] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M7.o1964767 [2023-10-10 15:08:08,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M7.o1964767 [2023-10-10 15:08:08,484] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M7.o1964767 [2023-10-10 15:08:08,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M7.o1964767 [2023-10-10 15:08:08,504] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M7.o1964767 [2023-10-10 15:08:08,538] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M5.o1964765 [2023-10-10 15:08:08,541] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M5.o1964765 [2023-10-10 15:08:08,541] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M5.o1964765 [2023-10-10 15:08:08,546] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M5.o1964765 [2023-10-10 15:08:08,557] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M5.o1964765 [2023-10-10 15:08:08,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M11.o1964771 [2023-10-10 15:08:08,608] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M11.o1964771 [2023-10-10 15:08:08,608] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M11.o1964771 [2023-10-10 15:08:08,618] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M11.o1964771 [2023-10-10 15:08:08,629] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M11.o1964771 [2023-10-10 15:08:08,653] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M15.o1964774 [2023-10-10 15:08:08,655] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M15.o1964774 [2023-10-10 15:08:08,656] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M15.o1964774 [2023-10-10 15:08:08,660] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M15.o1964774 [2023-10-10 15:08:08,670] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M15.o1964774 [2023-10-10 15:08:08,696] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M12.o1964772 [2023-10-10 15:08:08,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M12.o1964772 [2023-10-10 15:08:08,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M12.o1964772 [2023-10-10 15:08:08,703] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M12.o1964772 [2023-10-10 15:08:08,713] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M12.o1964772 [2023-10-10 15:08:08,745] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M6.o1964766 [2023-10-10 15:08:08,747] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M6.o1964766 [2023-10-10 15:08:08,747] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M6.o1964766 [2023-10-10 15:08:08,755] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M6.o1964766 [2023-10-10 15:08:08,772] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M6.o1964766 [2023-10-10 15:08:08,832] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M9.o1964769 [2023-10-10 15:08:08,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M9.o1964769 [2023-10-10 15:08:08,835] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M9.o1964769 [2023-10-10 15:08:08,839] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M9.o1964769 [2023-10-10 15:08:08,849] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M9.o1964769 [2023-10-10 15:08:08,863] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-10-10 15:08:08,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-10-10 15:08:08,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-10-10 15:08:08,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-10-10 15:08:08,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-10-10 15:08:08,916] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:08:08,919] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:08:08,923] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:08:08,943] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:08,945] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:08,946] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:08,951] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:08,962] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:08,972] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M10.o1964770 [2023-10-10 15:08:08,975] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M10.o1964770 [2023-10-10 15:08:08,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M10.o1964770 [2023-10-10 15:08:08,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M10.o1964770 [2023-10-10 15:08:08,994] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M10.o1964770 [2023-10-10 15:08:09,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_RmStraightPk.sh [2023-10-10 15:08:09,053] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_RmStraightPk.sh [2023-10-10 15:08:09,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_RmStraightPk.sh [2023-10-10 15:08:09,078] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M16.o1964775 [2023-10-10 15:08:09,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M16.o1964775 [2023-10-10 15:08:09,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M16.o1964775 [2023-10-10 15:08:09,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M16.o1964775 [2023-10-10 15:08:09,096] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M16.o1964775 [2023-10-10 15:08:09,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M8.o1964768 [2023-10-10 15:08:09,105] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M8.o1964768 [2023-10-10 15:08:09,105] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M8.o1964768 [2023-10-10 15:08:09,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M8.o1964768 [2023-10-10 15:08:09,120] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M8.o1964768 [2023-10-10 15:08:09,127] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M13.o1964773 [2023-10-10 15:08:09,129] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M13.o1964773 [2023-10-10 15:08:09,129] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M13.o1964773 [2023-10-10 15:08:09,134] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M13.o1964773 [2023-10-10 15:08:09,150] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G215_k4me1_k27ac_k9ac_G215M13.o1964773 [2023-10-10 15:08:09,171] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: remove_straight_peaks.py [2023-10-10 15:08:09,176] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: remove_straight_peaks.py [2023-10-10 15:08:09,177] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: remove_straight_peaks.py [2023-10-10 15:08:09,183] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: remove_straight_peaks.py [2023-10-10 15:08:09,196] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: remove_straight_peaks.py [2023-10-10 15:08:09,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: remove_straight_peaks.sh [2023-10-10 15:08:09,206] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: remove_straight_peaks.sh [2023-10-10 15:08:09,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: remove_straight_peaks.sh [2023-10-10 15:08:09,556] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:09,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:09,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:09,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:09,578] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:09,584] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M8.o1973521 [2023-10-10 15:08:09,587] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M8.o1973521 [2023-10-10 15:08:09,587] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M8.o1973521 [2023-10-10 15:08:09,591] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M8.o1973521 [2023-10-10 15:08:09,602] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M8.o1973521 [2023-10-10 15:08:09,608] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M6.o1973519 [2023-10-10 15:08:09,611] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M6.o1973519 [2023-10-10 15:08:09,611] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M6.o1973519 [2023-10-10 15:08:09,617] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M6.o1973519 [2023-10-10 15:08:09,634] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M6.o1973519 [2023-10-10 15:08:09,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_normbigWig.sh [2023-10-10 15:08:09,643] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_normbigWig.sh [2023-10-10 15:08:09,647] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_normbigWig.sh [2023-10-10 15:08:09,662] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M5.o1973518 [2023-10-10 15:08:09,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M5.o1973518 [2023-10-10 15:08:09,665] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M5.o1973518 [2023-10-10 15:08:09,669] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M5.o1973518 [2023-10-10 15:08:09,685] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M5.o1973518 [2023-10-10 15:08:09,691] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M13.o1973526 [2023-10-10 15:08:09,693] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M13.o1973526 [2023-10-10 15:08:09,694] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M13.o1973526 [2023-10-10 15:08:09,699] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M13.o1973526 [2023-10-10 15:08:09,710] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M13.o1973526 [2023-10-10 15:08:09,717] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern 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because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M10.o1973523 [2023-10-10 15:08:09,774] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M10.o1973523 [2023-10-10 15:08:09,792] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M10.o1973523 [2023-10-10 15:08:09,799] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M11.o1973524 [2023-10-10 15:08:09,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M11.o1973524 [2023-10-10 15:08:09,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M11.o1973524 [2023-10-10 15:08:09,808] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M11.o1973524 [2023-10-10 15:08:09,820] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M11.o1973524 [2023-10-10 15:08:09,827] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M16.o1973528 [2023-10-10 15:08:09,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M16.o1973528 [2023-10-10 15:08:09,830] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M16.o1973528 [2023-10-10 15:08:09,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M16.o1973528 [2023-10-10 15:08:09,845] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M16.o1973528 [2023-10-10 15:08:09,852] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M12.o1973525 [2023-10-10 15:08:09,855] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M12.o1973525 [2023-10-10 15:08:09,855] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M12.o1973525 [2023-10-10 15:08:09,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M12.o1973525 [2023-10-10 15:08:09,870] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M12.o1973525 [2023-10-10 15:08:09,878] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:08:09,880] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:08:09,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:08:09,908] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:09,911] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:09,911] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:09,916] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:09,925] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:09,931] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M9.o1973522 [2023-10-10 15:08:09,933] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M9.o1973522 [2023-10-10 15:08:09,933] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M9.o1973522 [2023-10-10 15:08:09,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M9.o1973522 [2023-10-10 15:08:09,950] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G215_k4me1_k27ac_k9ac_G215M9.o1973522 [2023-10-10 15:08:09,957] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: normbigWig.qsub [2023-10-10 15:08:09,960] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: normbigWig.qsub [2023-10-10 15:08:09,960] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: normbigWig.qsub [2023-10-10 15:08:09,965] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: normbigWig.qsub [2023-10-10 15:08:09,979] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: normbigWig.qsub [2023-10-10 15:08:10,011] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: BAM_to_WIG.sh [2023-10-10 15:08:10,015] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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[DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bigWigToWig [2023-10-10 15:08:10,112] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bigWigToWig [2023-10-10 15:08:10,133] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bedGraphToBigWig [2023-10-10 15:08:10,136] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bedGraphToBigWig [2023-10-10 15:08:10,136] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bedGraphToBigWig [2023-10-10 15:08:10,141] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: bedGraphToBigWig [2023-10-10 15:08:10,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bedGraphToBigWig [2023-10-10 15:08:10,149] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bedGraphToBigWig [2023-10-10 15:08:10,235] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:10,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:10,238] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:10,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:10,264] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:10,271] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08c_G215_k4me1_k27ac_k9ac_G215M9.o1973227 [2023-10-10 15:08:10,274] multiqc [DEBUG ] File ignored 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[DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08c_G215_k4me1_k27ac_k9ac_G215M5.o1973223 [2023-10-10 15:08:10,316] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08c_G215_k4me1_k27ac_k9ac_G215M5.o1973223 [2023-10-10 15:08:10,332] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08c_G215_k4me1_k27ac_k9ac_G215M5.o1973223 [2023-10-10 15:08:10,340] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SICER.qsub [2023-10-10 15:08:10,342] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: SICER.qsub [2023-10-10 15:08:10,342] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: SICER.qsub [2023-10-10 15:08:10,346] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: SICER.qsub [2023-10-10 15:08:10,377] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: SICER.qsub [2023-10-10 15:08:10,385] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08c_G215_k4me1_k27ac_k9ac_G215M6.o1973224 [2023-10-10 15:08:10,387] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08c_G215_k4me1_k27ac_k9ac_G215M6.o1973224 [2023-10-10 15:08:10,388] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08c_G215_k4me1_k27ac_k9ac_G215M6.o1973224 [2023-10-10 15:08:10,392] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08c_G215_k4me1_k27ac_k9ac_G215M6.o1973224 [2023-10-10 15:08:10,409] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08c_G215_k4me1_k27ac_k9ac_G215M6.o1973224 [2023-10-10 15:08:10,421] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08c_G215_k4me1_k27ac_k9ac_G215M7.o1973225 [2023-10-10 15:08:10,424] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08c_G215_k4me1_k27ac_k9ac_G215M7.o1973225 [2023-10-10 15:08:10,424] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08c_G215_k4me1_k27ac_k9ac_G215M7.o1973225 [2023-10-10 15:08:10,428] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08c_G215_k4me1_k27ac_k9ac_G215M7.o1973225 [2023-10-10 15:08:10,446] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08c_G215_k4me1_k27ac_k9ac_G215M7.o1973225 [2023-10-10 15:08:10,452] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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[2023-10-10 15:08:12,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-10-10 15:08:12,208] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-10-10 15:08:12,218] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-10-10 15:08:12,257] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Peak_Counts.sh [2023-10-10 15:08:12,259] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Peak_Counts.sh [2023-10-10 15:08:12,278] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-10-10 15:08:12,280] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-10-10 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] File ignored by hicexplorer because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:12,444] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:12,454] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:12,454] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:12,454] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:12,454] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:12,454] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:12,455] multiqc [DEBUG ] File ignored by rseqc/junction_annotation 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pattern: G215M8-W400-G2400-E100.scoreisland.bed [2023-10-10 15:08:12,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7-W400-G2400-E100.scoreisland.bed [2023-10-10 15:08:12,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16-W400-G2400-E100.scoreisland.bed [2023-10-10 15:08:12,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12-W400-G2400-E100.scoreisland.bed [2023-10-10 15:08:12,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9-W400-G2400-E100.scoreisland.bed [2023-10-10 15:08:12,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6-W400-G2400-E100.scoreisland.bed [2023-10-10 15:08:12,680] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13-W400-G2400-E100.scoreisland.bed [2023-10-10 15:08:12,680] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5-W400-G2400-E100.scoreisland.bed [2023-10-10 15:08:12,681] multiqc [DEBUG ] Ignoring file as matched 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[2023-10-10 15:08:12,826] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215_k4me1_k27ac_k9ac_Tracks_PileUp.txt [2023-10-10 15:08:12,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215_k4me1_k27ac_k9ac_Tracks_PileUp.txt [2023-10-10 15:08:12,839] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215_k4me1_k27ac_k9ac_Tracks_PileUp.txt [2023-10-10 15:08:12,846] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215_k4me1_k27ac_k9ac_Tracks_Wiggle_autoON.txt [2023-10-10 15:08:12,848] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215_k4me1_k27ac_k9ac_Tracks_Wiggle_autoON.txt [2023-10-10 15:08:12,848] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215_k4me1_k27ac_k9ac_Tracks_Wiggle_autoON.txt [2023-10-10 15:08:12,858] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215_k4me1_k27ac_k9ac_Tracks_Wiggle_autoON.txt [2023-10-10 15:08:12,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215_k4me1_k27ac_k9ac_Tracks_Wiggle_autoON.txt [2023-10-10 15:08:12,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215_k4me1_k27ac_k9ac_Tracks_Wiggle.txt [2023-10-10 15:08:12,875] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215_k4me1_k27ac_k9ac_Tracks_Wiggle.txt [2023-10-10 15:08:12,876] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215_k4me1_k27ac_k9ac_Tracks_Wiggle.txt [2023-10-10 15:08:12,880] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215_k4me1_k27ac_k9ac_Tracks_Wiggle.txt [2023-10-10 15:08:12,889] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215_k4me1_k27ac_k9ac_Tracks_Wiggle.txt [2023-10-10 15:08:12,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:12,898] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:12,899] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:12,903] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:12,964] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 15:08:12,970] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M5.o1967108 [2023-10-10 15:08:13,148] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M5.o1967108 [2023-10-10 15:08:13,148] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M5.o1967108 [2023-10-10 15:08:13,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M5.o1967108 [2023-10-10 15:08:13,175] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M5.o1967108 [2023-10-10 15:08:13,183] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M13.o1967123 [2023-10-10 15:08:13,186] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M13.o1967123 [2023-10-10 15:08:13,186] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M13.o1967123 [2023-10-10 15:08:13,191] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M13.o1967123 [2023-10-10 15:08:13,206] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M13.o1967123 [2023-10-10 15:08:13,212] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M10.o1967117 [2023-10-10 15:08:13,215] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M10.o1967117 [2023-10-10 15:08:13,216] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M10.o1967117 [2023-10-10 15:08:13,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M10.o1967117 [2023-10-10 15:08:13,237] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M10.o1967117 [2023-10-10 15:08:13,244] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M9.o1967115 [2023-10-10 15:08:13,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M9.o1967115 [2023-10-10 15:08:13,246] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M9.o1967115 [2023-10-10 15:08:13,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M9.o1967115 [2023-10-10 15:08:13,266] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M9.o1967115 [2023-10-10 15:08:13,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_macs2.sh [2023-10-10 15:08:13,280] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_macs2.sh [2023-10-10 15:08:13,285] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_macs2.sh [2023-10-10 15:08:13,327] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 15:08:13,330] multiqc [DEBUG ] 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ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M11.o1967119 [2023-10-10 15:08:13,378] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:13,387] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 15:08:13,407] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M15.o1967125 [2023-10-10 15:08:13,409] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M15.o1967125 [2023-10-10 15:08:13,409] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M15.o1967125 [2023-10-10 15:08:13,414] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M15.o1967125 [2023-10-10 15:08:13,429] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M15.o1967125 [2023-10-10 15:08:13,435] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M16.o1967127 [2023-10-10 15:08:13,437] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M16.o1967127 [2023-10-10 15:08:13,437] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M16.o1967127 [2023-10-10 15:08:13,442] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M16.o1967127 [2023-10-10 15:08:13,456] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G215_k4me1_k27ac_k9ac_G215M16.o1967127 [2023-10-10 15:08:13,464] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: overlap.R [2023-10-10 15:08:13,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: overlap.R [2023-10-10 15:08:13,467] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: overlap.R [2023-10-10 15:08:13,471] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: overlap.R [2023-10-10 15:08:13,482] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: overlap.R [2023-10-10 15:08:13,517] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: overlap.sh [2023-10-10 15:08:13,521] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: overlap.sh [2023-10-10 15:08:13,521] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: overlap.sh [2023-10-10 15:08:13,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: overlap.sh [2023-10-10 15:08:13,539] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: overlap.sh [2023-10-10 15:08:13,546] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-10-10 15:08:13,550] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-10-10 15:08:13,555] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-10-10 15:08:13,599] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Peak_Counts.sh [2023-10-10 15:08:13,602] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Peak_Counts.sh [2023-10-10 15:08:13,621] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-10-10 15:08:13,623] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-10-10 15:08:13,624] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-10-10 15:08:13,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-10-10 15:08:13,640] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-10-10 15:08:13,670] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-10-10 15:08:13,672] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-10-10 15:08:13,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-10-10 15:08:13,748] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:13,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:13,751] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:13,756] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:13,756] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:13,756] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:13,757] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:13,757] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:13,757] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:13,757] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:13,757] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:13,757] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:13,764] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 15:08:13,771] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-10-10 15:08:13,774] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-10-10 15:08:13,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-10-10 15:08:13,833] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: MACS2_Peak_Width.txt [2023-10-10 15:08:13,837] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: MACS2_Peak_Width.txt [2023-10-10 15:08:13,858] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: ENCODE_Blacklist_Overlap_Summary.txt [2023-10-10 15:08:13,861] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: ENCODE_Blacklist_Overlap_Summary.txt [2023-10-10 15:08:13,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,905] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,906] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,906] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,914] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Chr_Peak_Counts.pdf [2023-10-10 15:08:13,914] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,915] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,917] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M13_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,918] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M5_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,919] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,919] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M12_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,920] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M7_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,920] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M9_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,921] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M8_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,922] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M11_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,922] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M16_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,923] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M10_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:13,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-10-10 15:08:13,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_CKDL230032530-1A_H77VKDSX7_L3_R2.fastq.gz [2023-10-10 15:08:13,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_CKDL230032530-1A_H77VKDSX7_L3_R1.fastq.gz [2023-10-10 15:08:13,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_sorted_mapped.bam.bai [2023-10-10 15:08:13,939] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_alignments.bam [2023-10-10 15:08:13,970] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_alignments.bam.bai [2023-10-10 15:08:13,971] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_sorted_mapped.bam [2023-10-10 15:08:14,010] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:14,020] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:14,020] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:14,027] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:14,027] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:14,027] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:14,027] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:14,027] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:14,028] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:14,028] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:14,028] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:14,040] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:14,558] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:14,607] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:14,616] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:14,616] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:14,623] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:14,623] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:14,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:14,624] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:14,624] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:14,624] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:14,624] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:14,624] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:14,638] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:15,220] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:15,264] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:08:15,266] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:08:15,267] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:08:15,271] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:08:15,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:08:15,279] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:08:15,312] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:15,316] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:15,317] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:15,322] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:15,323] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:15,323] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:15,323] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:15,323] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:15,323] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:15,323] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:15,323] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:15,332] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:15,743] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M15_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:15,771] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:08:15,774] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:08:15,774] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:08:15,779] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:08:15,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:08:15,786] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M15_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:08:15,788] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_broad_MACS2_peaks.broadPeak.bed [2023-10-10 15:08:15,789] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:15,820] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M15_read_MACS2_peaks.out1 [2023-10-10 15:08:15,824] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M15_read_MACS2_peaks.out1 [2023-10-10 15:08:15,825] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M15_read_MACS2_peaks.out1 [2023-10-10 15:08:15,831] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M15_read_MACS2_peaks.out1 [2023-10-10 15:08:15,831] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M15_read_MACS2_peaks.out1 [2023-10-10 15:08:15,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M15_read_MACS2_peaks.out1 [2023-10-10 15:08:15,832] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M15_read_MACS2_peaks.out1 [2023-10-10 15:08:15,832] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M15_read_MACS2_peaks.out1 [2023-10-10 15:08:15,832] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M15_read_MACS2_peaks.out1 [2023-10-10 15:08:15,832] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M15_read_MACS2_peaks.out1 [2023-10-10 15:08:15,832] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M15_read_MACS2_peaks.out1 [2023-10-10 15:08:15,841] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M15_read_MACS2_peaks.out1 [2023-10-10 15:08:16,237] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M15_read_MACS2_peaks.out1 [2023-10-10 15:08:16,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_narrow_MACS2_summits.bed [2023-10-10 15:08:16,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 15:08:16,287] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:08:16,287] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 15:08:16,292] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:08:16,295] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:08:16,309] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 15:08:16,309] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:08:16,310] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 15:08:16,315] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:16,317] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:16,317] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:16,322] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:16,322] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:16,322] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:16,322] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:16,322] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:16,322] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:16,322] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:16,322] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:16,343] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:17,464] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M15_read_Peak_Union.out1 [2023-10-10 15:08:17,527] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_filtered_StrgtPks_sorted.bam.bai [2023-10-10 15:08:17,527] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_filtered_StrgtPks_sorted.bam [2023-10-10 15:08:17,528] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_StrgtPks_tab.bed [2023-10-10 15:08:17,528] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_StrgtPksRm_tab.bed [2023-10-10 15:08:17,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_filtered_StrgtPks.bam.bai [2023-10-10 15:08:17,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_filtered_StrgtPks.bam [2023-10-10 15:08:17,531] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15_hist.pdf [2023-10-10 15:08:17,555] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M15_metrics [2023-10-10 15:08:17,559] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M15_metrics [2023-10-10 15:08:17,560] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M15_metrics [2023-10-10 15:08:17,566] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M15_metrics [2023-10-10 15:08:17,583] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M15_metrics [2023-10-10 15:08:17,586] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15-1-removed.bed [2023-10-10 15:08:17,587] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15-W400-G2400-E100-islandfiltered.bed [2023-10-10 15:08:17,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland.bb [2023-10-10 15:08:17,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland.bb [2023-10-10 15:08:17,598] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland.bb [2023-10-10 15:08:17,602] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland.bb [2023-10-10 15:08:17,602] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland.bb [2023-10-10 15:08:17,609] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland.bb [2023-10-10 15:08:17,633] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 15:08:17,658] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M15_read_SICER.out1 [2023-10-10 15:08:17,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M15_read_SICER.out1 [2023-10-10 15:08:17,662] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M15_read_SICER.out1 [2023-10-10 15:08:17,668] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M15_read_SICER.out1 [2023-10-10 15:08:17,668] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M15_read_SICER.out1 [2023-10-10 15:08:17,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M15_read_SICER.out1 [2023-10-10 15:08:17,668] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M15_read_SICER.out1 [2023-10-10 15:08:17,668] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M15_read_SICER.out1 [2023-10-10 15:08:17,668] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M15_read_SICER.out1 [2023-10-10 15:08:17,668] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M15_read_SICER.out1 [2023-10-10 15:08:17,668] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M15_read_SICER.out1 [2023-10-10 15:08:17,679] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M15_read_SICER.out1 [2023-10-10 15:08:18,246] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M15_read_SICER.out1 [2023-10-10 15:08:18,282] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland [2023-10-10 15:08:18,284] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland [2023-10-10 15:08:18,284] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland [2023-10-10 15:08:18,288] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland [2023-10-10 15:08:18,288] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland [2023-10-10 15:08:18,288] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland [2023-10-10 15:08:18,289] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland [2023-10-10 15:08:18,289] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland [2023-10-10 15:08:18,289] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland [2023-10-10 15:08:18,289] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland [2023-10-10 15:08:18,802] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M15-W400-G2400-E100.scoreisland [2023-10-10 15:08:18,836] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 15:08:18,839] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:08:18,840] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 15:08:18,841] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15-W400-G2400-E100.scoreisland_common.bed [2023-10-10 15:08:18,848] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:08:18,850] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:08:18,864] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:08:18,865] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M15-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 15:08:18,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_CKDL230032530-1A_H77VKDSX7_L3_R1.fastq.gz [2023-10-10 15:08:18,886] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_CKDL230032530-1A_H77VKDSX7_L3_R2.fastq.gz [2023-10-10 15:08:18,891] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_sorted_mapped.bam.bai [2023-10-10 15:08:18,892] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_alignments.bam [2023-10-10 15:08:18,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_alignments.bam.bai [2023-10-10 15:08:18,923] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_sorted_mapped.bam [2023-10-10 15:08:18,930] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:08:18,933] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:08:18,933] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:08:18,942] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:08:18,943] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:08:18,943] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:08:18,943] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:08:18,943] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:08:18,943] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:08:18,943] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:08:18,943] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:08:18,964] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:08:20,068] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M6_read_Peak_Union.out1 [2023-10-10 15:08:20,134] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:08:20,136] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:08:20,137] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:08:20,141] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:08:20,141] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:08:20,148] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak.bb [2023-10-10 15:08:20,149] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 15:08:20,202] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:20,206] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:20,207] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:20,213] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:20,213] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:20,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:20,214] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:20,214] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:20,214] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:20,214] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:20,214] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:20,221] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:20,486] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.gappedPeak [2023-10-10 15:08:20,540] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M6_read_MACS2_peaks.out1 [2023-10-10 15:08:20,544] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M6_read_MACS2_peaks.out1 [2023-10-10 15:08:20,545] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M6_read_MACS2_peaks.out1 [2023-10-10 15:08:20,551] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M6_read_MACS2_peaks.out1 [2023-10-10 15:08:20,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M6_read_MACS2_peaks.out1 [2023-10-10 15:08:20,604] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M6_read_MACS2_peaks.out1 [2023-10-10 15:08:20,619] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M6_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:08:20,621] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M6_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:08:20,621] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M6_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:08:20,627] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M6_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:08:20,637] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M6_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 15:08:20,668] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M6_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:20,673] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M6_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:20,674] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M6_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:20,679] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M6_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:20,680] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M6_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:20,740] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M6_narrow_MACS2_peaks.narrowPeak [2023-10-10 15:08:20,774] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:20,778] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:20,778] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:20,786] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:20,786] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:20,786] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:20,786] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:20,786] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:20,786] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:20,786] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:21,043] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M6_broad_MACS2_peaks.broadPeak [2023-10-10 15:08:21,063] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_broad_MACS2_peaks.broadPeak.bed [2023-10-10 15:08:21,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_narrow_MACS2_summits.bed [2023-10-10 15:08:21,085] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 15:08:21,085] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:08:21,086] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 15:08:21,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 15:08:21,092] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:08:21,094] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:08:21,108] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 15:08:21,109] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:08:21,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_filtered_StrgtPks.bam [2023-10-10 15:08:21,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_filtered_StrgtPks.bam.bai [2023-10-10 15:08:21,111] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_filtered_StrgtPks_sorted.bam [2023-10-10 15:08:21,111] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_StrgtPksRm_tab.bed [2023-10-10 15:08:21,112] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_filtered_StrgtPks_sorted.bam.bai [2023-10-10 15:08:21,112] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_StrgtPks_tab.bed [2023-10-10 15:08:21,155] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M6_read_SICER.out1 [2023-10-10 15:08:21,159] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M6_read_SICER.out1 [2023-10-10 15:08:21,160] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M6_read_SICER.out1 [2023-10-10 15:08:21,171] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M6_read_SICER.out1 [2023-10-10 15:08:21,172] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M6_read_SICER.out1 [2023-10-10 15:08:21,172] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M6_read_SICER.out1 [2023-10-10 15:08:21,172] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M6_read_SICER.out1 [2023-10-10 15:08:21,172] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M6_read_SICER.out1 [2023-10-10 15:08:21,172] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M6_read_SICER.out1 [2023-10-10 15:08:21,172] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M6_read_SICER.out1 [2023-10-10 15:08:21,601] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M6_read_SICER.out1 [2023-10-10 15:08:21,635] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland [2023-10-10 15:08:21,638] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland [2023-10-10 15:08:21,638] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland [2023-10-10 15:08:21,643] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland [2023-10-10 15:08:21,643] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland [2023-10-10 15:08:21,643] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland [2023-10-10 15:08:21,643] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland [2023-10-10 15:08:21,643] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland [2023-10-10 15:08:21,643] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland [2023-10-10 15:08:21,643] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland [2023-10-10 15:08:22,030] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland [2023-10-10 15:08:22,079] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:08:22,082] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:08:22,083] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:08:22,088] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:08:22,088] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:08:22,088] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:08:22,089] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:08:22,089] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:08:22,089] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:08:22,089] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:08:22,089] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:08:22,089] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:08:22,089] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:08:30,191] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 15:08:30,686] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 15:08:30,687] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6-W400-G2400-E100-islandfiltered.bed [2023-10-10 15:08:30,715] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland.bb [2023-10-10 15:08:30,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland.bb [2023-10-10 15:08:30,720] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland.bb [2023-10-10 15:08:30,725] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland.bb [2023-10-10 15:08:30,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland.bb [2023-10-10 15:08:30,734] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M6-W400-G2400-E100.scoreisland.bb [2023-10-10 15:08:30,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6-1-removed.bed [2023-10-10 15:08:30,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 15:08:30,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 15:08:30,743] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:08:30,747] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 15:08:30,764] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 15:08:30,764] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 15:08:30,765] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 15:08:30,765] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6-W400-G2400-E100.scoreisland_common.bed [2023-10-10 15:08:30,767] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M6_hist.pdf [2023-10-10 15:08:30,797] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M6_metrics [2023-10-10 15:08:30,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M6_metrics [2023-10-10 15:08:30,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M6_metrics [2023-10-10 15:08:30,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M6_metrics [2023-10-10 15:08:30,825] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M6_metrics [2023-10-10 15:08:31,126] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.1.2 [2023-10-10 15:08:31,716] multiqc.modules.macs2.macs2 [INFO ] Found 22 logs [2023-10-10 15:08:31,725] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.1.2 [2023-10-10 15:08:31,785] multiqc.modules.picard.picard [INFO ] Found 11 InsertSizeMetrics reports [2023-10-10 15:08:31,809] multiqc.modules.samtools.samtools [INFO ] Found 11 flagstat reports [2023-10-10 15:08:31,816] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M7_idxstats [2023-10-10 15:08:31,816] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M5_idxstats [2023-10-10 15:08:31,817] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M11_idxstats [2023-10-10 15:08:31,817] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M16_idxstats [2023-10-10 15:08:31,818] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M9_idxstats [2023-10-10 15:08:31,818] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M8_idxstats [2023-10-10 15:08:31,818] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M13_idxstats [2023-10-10 15:08:31,819] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M12_idxstats [2023-10-10 15:08:31,819] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M10_idxstats [2023-10-10 15:08:31,819] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M7_idxstats [2023-10-10 15:08:31,820] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M5_idxstats [2023-10-10 15:08:31,821] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M11_idxstats [2023-10-10 15:08:31,821] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M16_idxstats [2023-10-10 15:08:31,822] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M15_idxstats [2023-10-10 15:08:31,822] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M9_idxstats [2023-10-10 15:08:31,823] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M8_idxstats [2023-10-10 15:08:31,823] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M13_idxstats [2023-10-10 15:08:31,824] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M6_idxstats [2023-10-10 15:08:31,824] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M12_idxstats [2023-10-10 15:08:31,824] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M10_idxstats [2023-10-10 15:08:31,825] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M15_idxstats [2023-10-10 15:08:31,825] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M6_idxstats [2023-10-10 15:08:31,831] multiqc.modules.samtools.samtools [INFO ] Found 11 idxstats reports [2023-10-10 15:08:31,838] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M11_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 15:08:31,841] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M16_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 15:08:31,842] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M15_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 15:08:31,843] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M12_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 15:08:31,845] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M13_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 15:08:31,846] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M7_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 15:08:31,847] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M9_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 15:08:31,849] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M5_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 15:08:31,850] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M10_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 15:08:31,852] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M8_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 15:08:31,854] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M6_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 15:08:31,854] multiqc.modules.bowtie2.bowtie2 [INFO ] Found 12 reports [2023-10-10 15:08:36,100] multiqc.modules.fastqc.fastqc [INFO ] Found 22 reports [2023-10-10 15:08:36,872] multiqc [INFO ] Compressing plot data [2023-10-10 15:08:37,900] multiqc [INFO ] Report : ../../../../net/waxman-server/mnt/data/waxmanlabvm_home/mpyatkov/G215_k4me1_k27ac_k9ac_MULTIQC/multiqc_report.html [2023-10-10 15:08:37,901] multiqc [INFO ] Data : ../../../../net/waxman-server/mnt/data/waxmanlabvm_home/mpyatkov/G215_k4me1_k27ac_k9ac_MULTIQC/multiqc_data [2023-10-10 15:08:37,901] multiqc [DEBUG ] Moving data file from '/scratch/tmp1ne_bl1t/multiqc_data' to '/net/waxman-server/mnt/data/waxmanlabvm_home/mpyatkov/G215_k4me1_k27ac_k9ac_MULTIQC/multiqc_data' [2023-10-10 15:08:39,187] multiqc [INFO ] MultiQC complete