Module	Section	Sample Name	Source
MACS2	all_sections	G215M3_narrow_MACS2	/projectnb/wax-dk/max/G215_k27me3/G215M3/fastq/bowtie2/G215M3_MACS2_output/G215M3_narrow_MACS2_peaks.xls
MACS2	all_sections	G215M3_broad_MACS2	/projectnb/wax-dk/max/G215_k27me3/G215M3/fastq/bowtie2/G215M3_MACS2_output/G215M3_broad_MACS2_peaks.xls
MACS2	all_sections	G215M4_narrow_MACS2	/projectnb/wax-dk/max/G215_k27me3/G215M4/fastq/bowtie2/G215M4_MACS2_output/G215M4_narrow_MACS2_peaks.xls
MACS2	all_sections	G215M4_broad_MACS2	/projectnb/wax-dk/max/G215_k27me3/G215M4/fastq/bowtie2/G215M4_MACS2_output/G215M4_broad_MACS2_peaks.xls
MACS2	all_sections	G215M2_broad_MACS2	/projectnb/wax-dk/max/G215_k27me3/G215M2/fastq/bowtie2/G215M2_MACS2_output/G215M2_broad_MACS2_peaks.xls
MACS2	all_sections	G215M2_narrow_MACS2	/projectnb/wax-dk/max/G215_k27me3/G215M2/fastq/bowtie2/G215M2_MACS2_output/G215M2_narrow_MACS2_peaks.xls
MACS2	all_sections	G215M1_broad_MACS2	/projectnb/wax-dk/max/G215_k27me3/G215M1/fastq/bowtie2/G215M1_MACS2_output/G215M1_broad_MACS2_peaks.xls
MACS2	all_sections	G215M1_narrow_MACS2	/projectnb/wax-dk/max/G215_k27me3/G215M1/fastq/bowtie2/G215M1_MACS2_output/G215M1_narrow_MACS2_peaks.xls
Picard	InsertSizeMetrics	G215M3_sorted_mapped	/projectnb/wax-dk/max/G215_k27me3/G215M3/fastq/bowtie2/CollectInsertSizeMetrics/G215M3_metrics
Picard	InsertSizeMetrics	G215M4_sorted_mapped	/projectnb/wax-dk/max/G215_k27me3/G215M4/fastq/bowtie2/CollectInsertSizeMetrics/G215M4_metrics
Picard	InsertSizeMetrics	G215M2_sorted_mapped	/projectnb/wax-dk/max/G215_k27me3/G215M2/fastq/bowtie2/CollectInsertSizeMetrics/G215M2_metrics
Picard	InsertSizeMetrics	G215M1_sorted_mapped	/projectnb/wax-dk/max/G215_k27me3/G215M1/fastq/bowtie2/CollectInsertSizeMetrics/G215M1_metrics
Samtools	flagstat	flagstat_G215M3	/projectnb/wax-dk/max/G215_k27me3/G215M3/fastq/bowtie2/flagstat_G215M3.txt
Samtools	flagstat	flagstat_G215M4	/projectnb/wax-dk/max/G215_k27me3/G215M4/fastq/bowtie2/flagstat_G215M4.txt
Samtools	flagstat	flagstat_G215M2	/projectnb/wax-dk/max/G215_k27me3/G215M2/fastq/bowtie2/flagstat_G215M2.txt
Samtools	flagstat	flagstat_G215M1	/projectnb/wax-dk/max/G215_k27me3/G215M1/fastq/bowtie2/flagstat_G215M1.txt
Samtools	idxstats	G215M3_idxstats	/projectnb/wax-dk/max/G215_k27me3/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M3_idxstats.out
Samtools	idxstats	G215M4_idxstats	/projectnb/wax-dk/max/G215_k27me3/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M4_idxstats.out
Samtools	idxstats	G215M2_idxstats	/projectnb/wax-dk/max/G215_k27me3/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M2_idxstats.out
Samtools	idxstats	G215M1_idxstats	/projectnb/wax-dk/max/G215_k27me3/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M1_idxstats.out
Bowtie 2 / HiSAT2	all_sections	G215M3_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k27me3/Scripts/04_Bowtie2/Step_04_G215_k27me3_G215M3.o1963910
Bowtie 2 / HiSAT2	all_sections	README_Bowtie2.sh	/projectnb/wax-dk/max/G215_k27me3/Scripts/04_Bowtie2/README_Bowtie2.sh
Bowtie 2 / HiSAT2	all_sections	G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k27me3/Scripts/04_Bowtie2/Step_04_G215_k27me3_G215M2.o1963909
Bowtie 2 / HiSAT2	all_sections	G215M1_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k27me3/Scripts/04_Bowtie2/Step_04_G215_k27me3_G215M1.o1963908
Bowtie 2 / HiSAT2	all_sections	G215M4_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k27me3/Scripts/04_Bowtie2/Step_04_G215_k27me3_G215M4.o1963911
FastQC	all_sections	G215M2_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M2_FASTQC/G215M2_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M2_FASTQC/G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M3_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M3_FASTQC/G215M3_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M3_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M3_FASTQC/G215M3_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G215M1_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M1_FASTQC/G215M1_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M1_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M1_FASTQC/G215M1_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G215M4_CKDL230032530-1A_H77VKDSX7_L3_R1	/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M4_FASTQC/G215M4_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G215M4_CKDL230032530-1A_H77VKDSX7_L3_R2	/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M4_FASTQC/G215M4_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip