Sample Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate FastQC_mqc-generalstats-fastqc-percent_duplicates FastQC_mqc-generalstats-fastqc-percent_gc FastQC_mqc-generalstats-fastqc-avg_sequence_length FastQC_mqc-generalstats-fastqc-percent_fails FastQC_mqc-generalstats-fastqc-total_sequences MACS2_mqc-generalstats-macs2-d MACS2_mqc-generalstats-macs2-peak_count Picard_mqc-generalstats-picard-summed_median Picard_mqc-generalstats-picard-summed_mean Samtools_mqc-generalstats-samtools-flagstat_total Samtools_mqc-generalstats-samtools-mapped_passed G215M1_CKDL230032530-1A_H77VKDSX7_L3_R1 94.12 18.659574310161133 42.0 150.0 9.090909090909092 3644296.0 G215M1_CKDL230032530-1A_H77VKDSX7_L3_R2 17.756287727590546 42.0 150.0 9.090909090909092 3644296.0 G215M1_broad_MACS2 297.0 8603 G215M1_narrow_MACS2 297.0 5916 G215M1_sorted_mapped 288 297.386807 G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1 94.6 20.373217614668093 42.0 150.0 9.090909090909092 9038584.0 G215M2_CKDL230032530-1A_H77VKDSX7_L3_R2 19.800304185603608 42.0 150.0 9.090909090909092 9038584.0 G215M2_broad_MACS2 275.0 3452 G215M2_narrow_MACS2 275.0 1942 G215M2_sorted_mapped 262 275.549646 G215M3_CKDL230032530-1A_H77VKDSX7_L3_R1 94.69 20.770754014054873 42.0 150.0 9.090909090909092 10237935.0 G215M3_CKDL230032530-1A_H77VKDSX7_L3_R2 20.3333715382428 42.0 150.0 9.090909090909092 10237935.0 G215M3_broad_MACS2 279.0 4398 G215M3_narrow_MACS2 279.0 783 G215M3_sorted_mapped 266 279.3861 G215M4_CKDL230032530-1A_H77VKDSX7_L3_R1 95.28 21.216730379242335 41.0 150.0 9.090909090909092 9019778.0 G215M4_CKDL230032530-1A_H77VKDSX7_L3_R2 20.567016153749293 41.0 150.0 9.090909090909092 9019778.0 G215M4_broad_MACS2 281.0 3290 G215M4_narrow_MACS2 281.0 1824 G215M4_sorted_mapped 271 281.655478 README_Bowtie2.sh 95.16 flagstat_G215M1 7288592 6860227 flagstat_G215M2 18077168 17101421 flagstat_G215M3 20475870 19388623 flagstat_G215M4 18039556 17188418