{
"report_data_sources": {
"MACS2": {
"all_sections": {
"G215M3_narrow_MACS2": "/projectnb/wax-dk/max/G215_k27me3/G215M3/fastq/bowtie2/G215M3_MACS2_output/G215M3_narrow_MACS2_peaks.xls",
"G215M3_broad_MACS2": "/projectnb/wax-dk/max/G215_k27me3/G215M3/fastq/bowtie2/G215M3_MACS2_output/G215M3_broad_MACS2_peaks.xls",
"G215M4_narrow_MACS2": "/projectnb/wax-dk/max/G215_k27me3/G215M4/fastq/bowtie2/G215M4_MACS2_output/G215M4_narrow_MACS2_peaks.xls",
"G215M4_broad_MACS2": "/projectnb/wax-dk/max/G215_k27me3/G215M4/fastq/bowtie2/G215M4_MACS2_output/G215M4_broad_MACS2_peaks.xls",
"G215M2_broad_MACS2": "/projectnb/wax-dk/max/G215_k27me3/G215M2/fastq/bowtie2/G215M2_MACS2_output/G215M2_broad_MACS2_peaks.xls",
"G215M2_narrow_MACS2": "/projectnb/wax-dk/max/G215_k27me3/G215M2/fastq/bowtie2/G215M2_MACS2_output/G215M2_narrow_MACS2_peaks.xls",
"G215M1_broad_MACS2": "/projectnb/wax-dk/max/G215_k27me3/G215M1/fastq/bowtie2/G215M1_MACS2_output/G215M1_broad_MACS2_peaks.xls",
"G215M1_narrow_MACS2": "/projectnb/wax-dk/max/G215_k27me3/G215M1/fastq/bowtie2/G215M1_MACS2_output/G215M1_narrow_MACS2_peaks.xls"
}
},
"Picard": {
"InsertSizeMetrics": {
"G215M3_sorted_mapped": "/projectnb/wax-dk/max/G215_k27me3/G215M3/fastq/bowtie2/CollectInsertSizeMetrics/G215M3_metrics",
"G215M4_sorted_mapped": "/projectnb/wax-dk/max/G215_k27me3/G215M4/fastq/bowtie2/CollectInsertSizeMetrics/G215M4_metrics",
"G215M2_sorted_mapped": "/projectnb/wax-dk/max/G215_k27me3/G215M2/fastq/bowtie2/CollectInsertSizeMetrics/G215M2_metrics",
"G215M1_sorted_mapped": "/projectnb/wax-dk/max/G215_k27me3/G215M1/fastq/bowtie2/CollectInsertSizeMetrics/G215M1_metrics"
}
},
"Samtools": {
"flagstat": {
"flagstat_G215M3": "/projectnb/wax-dk/max/G215_k27me3/G215M3/fastq/bowtie2/flagstat_G215M3.txt",
"flagstat_G215M4": "/projectnb/wax-dk/max/G215_k27me3/G215M4/fastq/bowtie2/flagstat_G215M4.txt",
"flagstat_G215M2": "/projectnb/wax-dk/max/G215_k27me3/G215M2/fastq/bowtie2/flagstat_G215M2.txt",
"flagstat_G215M1": "/projectnb/wax-dk/max/G215_k27me3/G215M1/fastq/bowtie2/flagstat_G215M1.txt"
},
"idxstats": {
"G215M3_idxstats": "/projectnb/wax-dk/max/G215_k27me3/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M3_idxstats.out",
"G215M4_idxstats": "/projectnb/wax-dk/max/G215_k27me3/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M4_idxstats.out",
"G215M2_idxstats": "/projectnb/wax-dk/max/G215_k27me3/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M2_idxstats.out",
"G215M1_idxstats": "/projectnb/wax-dk/max/G215_k27me3/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G215M1_idxstats.out"
}
},
"Bowtie 2 / HiSAT2": {
"all_sections": {
"G215M3_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k27me3/Scripts/04_Bowtie2/Step_04_G215_k27me3_G215M3.o1963910",
"README_Bowtie2.sh": "/projectnb/wax-dk/max/G215_k27me3/Scripts/04_Bowtie2/README_Bowtie2.sh",
"G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k27me3/Scripts/04_Bowtie2/Step_04_G215_k27me3_G215M2.o1963909",
"G215M1_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k27me3/Scripts/04_Bowtie2/Step_04_G215_k27me3_G215M1.o1963908",
"G215M4_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k27me3/Scripts/04_Bowtie2/Step_04_G215_k27me3_G215M4.o1963911"
}
},
"FastQC": {
"all_sections": {
"G215M2_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M2_FASTQC/G215M2_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip",
"G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M2_FASTQC/G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M3_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M3_FASTQC/G215M3_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M3_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M3_FASTQC/G215M3_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip",
"G215M1_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M1_FASTQC/G215M1_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M1_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M1_FASTQC/G215M1_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip",
"G215M4_CKDL230032530-1A_H77VKDSX7_L3_R1": "/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M4_FASTQC/G215M4_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.zip",
"G215M4_CKDL230032530-1A_H77VKDSX7_L3_R2": "/projectnb/wax-dk/max/G215_k27me3/Scripts/02_FASTQC/Job_Summary/G215M4_FASTQC/G215M4_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.zip"
}
}
},
"report_general_stats_data": [
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},
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{
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},
{
"flagstat_total": {
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{
"overall_alignment_rate": {
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