[2023-10-10 14:34:46,034] multiqc [DEBUG ] This is MultiQC v1.12 [2023-10-10 14:34:46,035] multiqc [DEBUG ] No MultiQC config found: /usr/lib/python3.8/site-packages/multiqc_config.yaml [2023-10-10 14:34:46,035] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2023-10-10 14:34:46,035] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-10-10 14:34:46,035] multiqc [DEBUG ] Command used: /usr/bin/multiqc . -o /net/waxman-server/mnt/data/waxmanlabvm_home/mpyatkov/G215_k27me3_MULTIQC/ [2023-10-10 14:34:47,687] multiqc [WARNING] MultiQC Version v1.16 now available! [2023-10-10 14:34:47,687] multiqc [DEBUG ] Command : /usr/bin/multiqc . -o /net/waxman-server/mnt/data/waxmanlabvm_home/mpyatkov/G215_k27me3_MULTIQC/ [2023-10-10 14:34:47,687] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G215_k27me3 [2023-10-10 14:34:47,687] multiqc [DEBUG ] Template : default [2023-10-10 14:34:47,687] multiqc [DEBUG ] Running Python 3.8.1 (default, Dec 26 2019, 14:42:08) [GCC 9.2.0] [2023-10-10 14:34:47,689] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2023-10-10 14:34:47,689] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp0s9mw9dl [2023-10-10 14:34:47,818] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G215_k27me3 [2023-10-10 14:34:48,143] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-10-10 14:34:48,147] multiqc [DEBUG ] File ignored 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G215M3_sorted_mapped.bam [2023-10-10 14:34:48,838] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_sorted_mapped.bam.bai [2023-10-10 14:34:48,843] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:34:48,846] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:34:48,846] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:34:48,851] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:34:48,851] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:34:48,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:34:48,857] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:34:48,858] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:34:48,858] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:34:48,858] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:34:48,858] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:34:48,872] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:34:49,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:34:49,618] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_StrgtPksRm_tab.bed [2023-10-10 14:34:49,618] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_filtered_StrgtPks.bam.bai [2023-10-10 14:34:49,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_filtered_StrgtPks_sorted.bam.bai [2023-10-10 14:34:49,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_filtered_StrgtPks_sorted.bam [2023-10-10 14:34:49,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_StrgtPks_tab.bed [2023-10-10 14:34:49,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_filtered_StrgtPks.bam [2023-10-10 14:34:49,648] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M3_read_SICER.out1 [2023-10-10 14:34:49,653] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M3_read_SICER.out1 [2023-10-10 14:34:49,653] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M3_read_SICER.out1 [2023-10-10 14:34:49,669] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M3_read_SICER.out1 [2023-10-10 14:34:49,669] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M3_read_SICER.out1 [2023-10-10 14:34:49,670] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M3_read_SICER.out1 [2023-10-10 14:34:49,670] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M3_read_SICER.out1 [2023-10-10 14:34:49,670] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M3_read_SICER.out1 [2023-10-10 14:34:49,670] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M3_read_SICER.out1 [2023-10-10 14:34:49,670] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M3_read_SICER.out1 [2023-10-10 14:34:50,053] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M3_read_SICER.out1 [2023-10-10 14:34:50,106] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M3-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:34:50,111] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M3-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:34:50,112] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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G215M3-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:02,145] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3-W400-G2400-E100-islandfiltered.bed [2023-10-10 14:35:02,146] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 14:35:02,147] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3-1-removed.bed [2023-10-10 14:35:02,157] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M3-W400-G2400-E100.scoreisland [2023-10-10 14:35:02,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M3-W400-G2400-E100.scoreisland [2023-10-10 14:35:02,160] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M3-W400-G2400-E100.scoreisland [2023-10-10 14:35:02,167] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 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[2023-10-10 14:35:02,553] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M3-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:02,566] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M3-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:02,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 14:35:02,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 14:35:02,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 14:35:02,573] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:02,577] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:02,602] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 14:35:02,602] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3-W400-G2400-E100.scoreisland_common.bed [2023-10-10 14:35:02,603] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 14:35:02,614] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M3_metrics [2023-10-10 14:35:02,618] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M3_metrics [2023-10-10 14:35:02,618] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M3_metrics [2023-10-10 14:35:02,624] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M3_metrics [2023-10-10 14:35:02,640] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M3_metrics [2023-10-10 14:35:02,642] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_hist.pdf [2023-10-10 14:35:02,676] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:02,680] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:02,680] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:02,686] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:02,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:02,687] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:02,687] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:02,687] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:02,687] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:02,687] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:02,834] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:02,847] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M3_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:02,850] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M3_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:02,850] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M3_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:02,855] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M3_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:02,863] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M3_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:02,865] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_narrow_MACS2_summits.bed [2023-10-10 14:35:02,891] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M3_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:02,894] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M3_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:02,895] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M3_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:02,903] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M3_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:02,944] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M3_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:02,966] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:02,970] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:02,970] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:02,975] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:02,975] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:03,142] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:03,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 14:35:03,186] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M3_read_MACS2_peaks.out1 [2023-10-10 14:35:03,196] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M3_read_MACS2_peaks.out1 [2023-10-10 14:35:03,196] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M3_read_MACS2_peaks.out1 [2023-10-10 14:35:03,202] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M3_read_MACS2_peaks.out1 [2023-10-10 14:35:03,240] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M3_read_MACS2_peaks.out1 [2023-10-10 14:35:03,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_broad_MACS2_peaks.broadPeak.bed [2023-10-10 14:35:03,249] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:03,252] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:03,252] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:03,257] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:03,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:03,266] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M3_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:03,267] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 14:35:03,267] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 14:35:03,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:03,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:03,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 14:35:03,299] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 14:35:03,299] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 14:35:03,299] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 14:35:03,302] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_CKDL230032530-1A_H77VKDSX7_L3_R1.fastq.gz [2023-10-10 14:35:03,305] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_CKDL230032530-1A_H77VKDSX7_L3_R2.fastq.gz [2023-10-10 14:35:03,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_alignments.bam.bai [2023-10-10 14:35:03,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_sorted_mapped.bam.bai [2023-10-10 14:35:03,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_alignments.bam [2023-10-10 14:35:03,307] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_sorted_mapped.bam [2023-10-10 14:35:03,341] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:03,343] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:03,344] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:03,349] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:03,349] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:03,349] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:03,349] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:03,349] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:03,349] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:03,349] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:03,349] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:03,363] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:04,122] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:04,199] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:04,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:04,203] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:04,215] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:04,216] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:04,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:04,216] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:04,216] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:04,216] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:04,216] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:04,216] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:04,216] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:04,216] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:15,514] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:16,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4-1-removed.bed [2023-10-10 14:35:16,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 14:35:16,290] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland [2023-10-10 14:35:16,293] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland [2023-10-10 14:35:16,294] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland [2023-10-10 14:35:16,300] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland [2023-10-10 14:35:16,300] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland [2023-10-10 14:35:16,300] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland [2023-10-10 14:35:16,301] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland [2023-10-10 14:35:16,301] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland [2023-10-10 14:35:16,301] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland [2023-10-10 14:35:16,301] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland [2023-10-10 14:35:16,731] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland [2023-10-10 14:35:16,761] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:16,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:16,765] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:16,772] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:16,772] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:16,782] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M4-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:16,789] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M4_read_SICER.out1 [2023-10-10 14:35:16,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M4_read_SICER.out1 [2023-10-10 14:35:16,793] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M4_read_SICER.out1 [2023-10-10 14:35:16,800] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M4_read_SICER.out1 [2023-10-10 14:35:16,800] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M4_read_SICER.out1 [2023-10-10 14:35:16,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M4_read_SICER.out1 [2023-10-10 14:35:16,800] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M4_read_SICER.out1 [2023-10-10 14:35:16,800] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M4_read_SICER.out1 [2023-10-10 14:35:16,800] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M4_read_SICER.out1 [2023-10-10 14:35:16,800] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M4_read_SICER.out1 [2023-10-10 14:35:16,800] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M4_read_SICER.out1 [2023-10-10 14:35:16,809] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M4_read_SICER.out1 [2023-10-10 14:35:17,255] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M4_read_SICER.out1 [2023-10-10 14:35:17,280] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4-W400-G2400-E100-islandfiltered.bed [2023-10-10 14:35:17,280] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 14:35:17,280] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 14:35:17,281] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 14:35:17,286] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:17,289] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:17,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 14:35:17,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 14:35:17,307] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4-W400-G2400-E100.scoreisland_common.bed [2023-10-10 14:35:17,307] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_filtered_StrgtPks.bam.bai [2023-10-10 14:35:17,307] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_filtered_StrgtPks.bam [2023-10-10 14:35:17,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_StrgtPks_tab.bed [2023-10-10 14:35:17,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_filtered_StrgtPks_sorted.bam [2023-10-10 14:35:17,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_filtered_StrgtPks_sorted.bam.bai [2023-10-10 14:35:17,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_StrgtPksRm_tab.bed [2023-10-10 14:35:17,321] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:17,325] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:17,325] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:17,332] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:17,340] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:17,368] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_broad_MACS2_peaks.broadPeak.bed [2023-10-10 14:35:17,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 14:35:17,379] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M4_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:17,382] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M4_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:17,382] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M4_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:17,388] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M4_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:17,396] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M4_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:17,397] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_narrow_MACS2_summits.bed [2023-10-10 14:35:17,428] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M4_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:17,432] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M4_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:17,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M4_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:17,439] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M4_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:17,439] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M4_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:17,505] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M4_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:17,537] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:17,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:17,543] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:17,550] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:17,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:17,660] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:17,692] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:17,697] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:17,697] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:17,703] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:17,703] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:17,828] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M4_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:17,841] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M4_read_MACS2_peaks.out1 [2023-10-10 14:35:17,844] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M4_read_MACS2_peaks.out1 [2023-10-10 14:35:17,844] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M4_read_MACS2_peaks.out1 [2023-10-10 14:35:17,856] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M4_read_MACS2_peaks.out1 [2023-10-10 14:35:17,856] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M4_read_MACS2_peaks.out1 [2023-10-10 14:35:17,921] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M4_read_MACS2_peaks.out1 [2023-10-10 14:35:17,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 14:35:17,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 14:35:17,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 14:35:17,931] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:17,935] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:17,953] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 14:35:17,954] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 14:35:17,954] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 14:35:17,960] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_hist.pdf [2023-10-10 14:35:17,968] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M4_metrics [2023-10-10 14:35:17,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M4_metrics [2023-10-10 14:35:17,972] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M4_metrics [2023-10-10 14:35:17,978] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M4_metrics [2023-10-10 14:35:17,995] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M4_metrics [2023-10-10 14:35:18,001] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1.fastq.gz [2023-10-10 14:35:18,004] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_CKDL230032530-1A_H77VKDSX7_L3_R2.fastq.gz [2023-10-10 14:35:18,004] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_sorted_mapped.bam [2023-10-10 14:35:18,005] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_alignments.bam.bai [2023-10-10 14:35:18,034] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_alignments.bam [2023-10-10 14:35:18,036] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_sorted_mapped.bam.bai [2023-10-10 14:35:18,043] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:18,046] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:18,047] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:18,052] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:18,052] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:18,052] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:18,052] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:18,052] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:18,052] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:18,052] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:18,052] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:18,065] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:18,739] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:18,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_StrgtPksRm_tab.bed [2023-10-10 14:35:18,777] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_filtered_StrgtPks.bam.bai [2023-10-10 14:35:18,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_filtered_StrgtPks_sorted.bam.bai [2023-10-10 14:35:18,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_StrgtPks_tab.bed [2023-10-10 14:35:18,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_filtered_StrgtPks.bam [2023-10-10 14:35:18,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_filtered_StrgtPks_sorted.bam [2023-10-10 14:35:18,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2-1-removed.bed [2023-10-10 14:35:18,788] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:18,792] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:18,792] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:18,797] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:18,797] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:18,806] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:18,816] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland [2023-10-10 14:35:18,819] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland [2023-10-10 14:35:18,819] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland [2023-10-10 14:35:18,825] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland [2023-10-10 14:35:18,825] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland [2023-10-10 14:35:18,825] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland [2023-10-10 14:35:18,825] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland [2023-10-10 14:35:18,826] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland [2023-10-10 14:35:18,826] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland [2023-10-10 14:35:18,826] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland [2023-10-10 14:35:19,278] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M2-W400-G2400-E100.scoreisland [2023-10-10 14:35:19,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2-W400-G2400-E100-islandfiltered.bed [2023-10-10 14:35:19,336] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 14:35:19,345] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M2_read_SICER.out1 [2023-10-10 14:35:19,348] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M2_read_SICER.out1 [2023-10-10 14:35:19,349] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M2_read_SICER.out1 [2023-10-10 14:35:19,355] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M2_read_SICER.out1 [2023-10-10 14:35:19,355] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M2_read_SICER.out1 [2023-10-10 14:35:19,355] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M2_read_SICER.out1 [2023-10-10 14:35:19,355] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M2_read_SICER.out1 [2023-10-10 14:35:19,355] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M2_read_SICER.out1 [2023-10-10 14:35:19,356] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M2_read_SICER.out1 [2023-10-10 14:35:19,356] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M2_read_SICER.out1 [2023-10-10 14:35:19,356] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M2_read_SICER.out1 [2023-10-10 14:35:19,365] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M2_read_SICER.out1 [2023-10-10 14:35:19,849] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M2_read_SICER.out1 [2023-10-10 14:35:19,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 14:35:19,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:19,886] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:19,903] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 14:35:19,903] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 14:35:19,903] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 14:35:19,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 14:35:19,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2-W400-G2400-E100.scoreisland_common.bed [2023-10-10 14:35:19,916] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M2_metrics [2023-10-10 14:35:19,920] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M2_metrics [2023-10-10 14:35:19,921] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M2_metrics [2023-10-10 14:35:19,936] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M2_metrics [2023-10-10 14:35:19,958] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M2_metrics [2023-10-10 14:35:19,960] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_hist.pdf [2023-10-10 14:35:19,963] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_narrow_MACS2_summits.bed [2023-10-10 14:35:19,994] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M2_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:19,999] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M2_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:19,999] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M2_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:20,005] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M2_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:20,005] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M2_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:20,082] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M2_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:20,093] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M2_read_MACS2_peaks.out1 [2023-10-10 14:35:20,097] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M2_read_MACS2_peaks.out1 [2023-10-10 14:35:20,097] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M2_read_MACS2_peaks.out1 [2023-10-10 14:35:20,103] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M2_read_MACS2_peaks.out1 [2023-10-10 14:35:20,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M2_read_MACS2_peaks.out1 [2023-10-10 14:35:20,174] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M2_read_MACS2_peaks.out1 [2023-10-10 14:35:20,178] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 14:35:20,202] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:20,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:20,208] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:20,216] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:20,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:20,336] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:20,343] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_broad_MACS2_peaks.broadPeak.bed [2023-10-10 14:35:20,351] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:20,360] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:20,360] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:20,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:20,380] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:20,433] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:20,438] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:20,439] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:20,446] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:20,446] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:20,583] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M2_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:20,599] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M2_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:20,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M2_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:20,603] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M2_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:20,610] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M2_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:20,619] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M2_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:20,621] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 14:35:20,621] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 14:35:20,621] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 14:35:20,627] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:20,631] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:20,647] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 14:35:20,647] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 14:35:20,648] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 14:35:20,716] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: index [2023-10-10 14:35:20,718] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: index [2023-10-10 14:35:20,718] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: index [2023-10-10 14:35:20,724] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: index [2023-10-10 14:35:20,733] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: index [2023-10-10 14:35:20,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-10-10 14:35:20,896] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-10-10 14:35:20,901] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-10-10 14:35:20,925] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-commit.sample [2023-10-10 14:35:20,929] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-commit.sample [2023-10-10 14:35:20,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: update.sample [2023-10-10 14:35:20,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: update.sample [2023-10-10 14:35:20,957] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: update.sample [2023-10-10 14:35:21,002] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-push.sample [2023-10-10 14:35:21,004] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-push.sample [2023-10-10 14:35:21,072] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-rebase.sample [2023-10-10 14:35:21,075] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pre-rebase.sample [2023-10-10 14:35:21,076] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-rebase.sample [2023-10-10 14:35:21,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pre-rebase.sample [2023-10-10 14:35:21,094] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pre-rebase.sample [2023-10-10 14:35:21,106] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: prepare-commit-msg.sample [2023-10-10 14:35:21,109] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: prepare-commit-msg.sample [2023-10-10 14:35:21,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 14:35:21,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 14:35:21,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 14:35:21,273] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 14:35:21,273] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 14:35:21,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 14:35:21,273] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 14:35:21,273] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 14:35:21,273] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 14:35:21,273] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 14:35:21,273] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 14:35:21,273] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 14:35:21,273] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 14:35:21,283] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.pack [2023-10-10 14:35:21,293] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.idx [2023-10-10 14:35:21,295] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.idx [2023-10-10 14:35:21,296] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.idx [2023-10-10 14:35:21,301] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.idx [2023-10-10 14:35:21,308] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pack-3c1ea8fabc62046adcaa3eed1299bdc2a6c6c2ed.idx [2023-10-10 14:35:21,338] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_CKDL230032530-1A_H77VKDSX7_L3_R2.fastq.gz [2023-10-10 14:35:21,341] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_CKDL230032530-1A_H77VKDSX7_L3_R1.fastq.gz [2023-10-10 14:35:21,341] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_alignments.bam.bai [2023-10-10 14:35:21,360] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_sorted_mapped.bam.bai [2023-10-10 14:35:21,361] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_alignments.bam [2023-10-10 14:35:21,361] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_sorted_mapped.bam [2023-10-10 14:35:21,367] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:21,369] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:21,369] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:21,374] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:21,374] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:21,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:21,374] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:21,374] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:21,374] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:21,374] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:21,374] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:21,387] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:22,061] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:22,121] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:22,126] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:22,126] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:22,133] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:22,133] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:22,133] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:22,133] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:22,133] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:22,133] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:22,133] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:22,382] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak [2023-10-10 14:35:22,435] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:22,439] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:22,440] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:22,446] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:22,446] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:22,446] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:22,446] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:22,446] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:22,447] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:22,447] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:22,447] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:22,453] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:22,708] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.gappedPeak [2023-10-10 14:35:22,755] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_narrow_MACS2_summits.bed [2023-10-10 14:35:22,755] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_broad_MACS2_peaks.broadPeak.bed [2023-10-10 14:35:22,780] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:22,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:22,785] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:22,792] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:22,793] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:22,793] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:22,793] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:22,793] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:22,793] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:22,793] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:22,981] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak [2023-10-10 14:35:22,995] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:22,998] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:22,998] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:23,002] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:23,002] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:23,012] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M1_broad_MACS2_peaks.broadPeak.bb [2023-10-10 14:35:23,020] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M1_read_MACS2_peaks.out1 [2023-10-10 14:35:23,026] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M1_read_MACS2_peaks.out1 [2023-10-10 14:35:23,026] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M1_read_MACS2_peaks.out1 [2023-10-10 14:35:23,036] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M1_read_MACS2_peaks.out1 [2023-10-10 14:35:23,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M1_read_MACS2_peaks.out1 [2023-10-10 14:35:23,036] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M1_read_MACS2_peaks.out1 [2023-10-10 14:35:23,036] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M1_read_MACS2_peaks.out1 [2023-10-10 14:35:23,036] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M1_read_MACS2_peaks.out1 [2023-10-10 14:35:23,036] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M1_read_MACS2_peaks.out1 [2023-10-10 14:35:23,036] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M1_read_MACS2_peaks.out1 [2023-10-10 14:35:23,212] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M1_read_MACS2_peaks.out1 [2023-10-10 14:35:23,225] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 14:35:23,233] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:23,235] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:23,236] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:23,242] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:23,242] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:23,253] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M1_narrow_MACS2_peaks.narrowPeak.bb [2023-10-10 14:35:23,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 14:35:23,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-10-10 14:35:23,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_narrow_MACS2_peaks.narrowPeak_common.bed [2023-10-10 14:35:23,260] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:23,264] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:23,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 14:35:23,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-10-10 14:35:23,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-10-10 14:35:23,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_filtered_StrgtPks_sorted.bam [2023-10-10 14:35:23,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_StrgtPks_tab.bed [2023-10-10 14:35:23,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_filtered_StrgtPks.bam.bai [2023-10-10 14:35:23,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_StrgtPksRm_tab.bed [2023-10-10 14:35:23,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_filtered_StrgtPks.bam [2023-10-10 14:35:23,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_filtered_StrgtPks_sorted.bam.bai [2023-10-10 14:35:23,293] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100.scoreisland [2023-10-10 14:35:23,297] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100.scoreisland [2023-10-10 14:35:23,297] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100.scoreisland [2023-10-10 14:35:23,303] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100.scoreisland [2023-10-10 14:35:23,304] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100.scoreisland [2023-10-10 14:35:23,621] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100.scoreisland [2023-10-10 14:35:23,638] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1-1-removed.bed [2023-10-10 14:35:23,639] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1-W400-G2400-E100-islandfiltered.bed [2023-10-10 14:35:23,668] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:23,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:23,673] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:23,679] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:23,679] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:23,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:23,679] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:23,680] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:23,680] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:23,680] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:23,680] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:23,680] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:23,680] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:30,999] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100-islandfiltered-normalized.wig [2023-10-10 14:35:31,471] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-10-10 14:35:31,479] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:31,483] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:31,483] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:31,489] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:31,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:31,497] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M1-W400-G2400-E100.scoreisland.bb [2023-10-10 14:35:31,503] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M1_read_SICER.out1 [2023-10-10 14:35:31,506] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M1_read_SICER.out1 [2023-10-10 14:35:31,506] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M1_read_SICER.out1 [2023-10-10 14:35:31,511] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M1_read_SICER.out1 [2023-10-10 14:35:31,511] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M1_read_SICER.out1 [2023-10-10 14:35:31,511] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M1_read_SICER.out1 [2023-10-10 14:35:31,511] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M1_read_SICER.out1 [2023-10-10 14:35:31,511] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M1_read_SICER.out1 [2023-10-10 14:35:31,511] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M1_read_SICER.out1 [2023-10-10 14:35:31,511] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M1_read_SICER.out1 [2023-10-10 14:35:31,824] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M1_read_SICER.out1 [2023-10-10 14:35:31,841] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-10-10 14:35:31,841] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-10-10 14:35:31,847] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:31,851] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-10-10 14:35:31,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1-W400-G2400-E100.scoreisland_unique.bed [2023-10-10 14:35:31,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1-W400-G2400-E100.scoreisland_common.bed [2023-10-10 14:35:31,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-10-10 14:35:31,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-10-10 14:35:31,872] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_hist.pdf [2023-10-10 14:35:31,877] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M1_metrics [2023-10-10 14:35:31,880] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M1_metrics [2023-10-10 14:35:31,880] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M1_metrics [2023-10-10 14:35:31,892] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M1_metrics [2023-10-10 14:35:31,907] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M1_metrics [2023-10-10 14:35:31,915] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:31,919] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:31,928] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:31,953] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_FASTQC.sh [2023-10-10 14:35:31,957] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_FASTQC.sh [2023-10-10 14:35:31,963] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_FASTQC.sh [2023-10-10 14:35:31,983] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M4.o1963740 [2023-10-10 14:35:31,986] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M4.o1963740 [2023-10-10 14:35:31,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M4.o1963740 [2023-10-10 14:35:31,998] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M4.o1963740 [2023-10-10 14:35:32,015] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M4.o1963740 [2023-10-10 14:35:32,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M2.o1963738 [2023-10-10 14:35:32,053] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M2.o1963738 [2023-10-10 14:35:32,054] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M2.o1963738 [2023-10-10 14:35:32,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M2.o1963738 [2023-10-10 14:35:32,074] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M2.o1963738 [2023-10-10 14:35:32,084] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 14:35:32,088] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 14:35:32,099] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 14:35:32,121] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 14:35:32,124] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 14:35:32,124] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 14:35:32,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 14:35:32,140] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 14:35:32,147] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M1.o1963737 [2023-10-10 14:35:32,150] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M1.o1963737 [2023-10-10 14:35:32,150] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M1.o1963737 [2023-10-10 14:35:32,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M1.o1963737 [2023-10-10 14:35:32,173] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M1.o1963737 [2023-10-10 14:35:32,182] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2023-10-10 14:35:32,185] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2023-10-10 14:35:32,186] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2023-10-10 14:35:32,193] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2023-10-10 14:35:32,214] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2023-10-10 14:35:32,222] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M3.o1963739 [2023-10-10 14:35:32,227] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M3.o1963739 [2023-10-10 14:35:32,227] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M3.o1963739 [2023-10-10 14:35:32,236] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M3.o1963739 [2023-10-10 14:35:32,252] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G215_k27me3_G215M3.o1963739 [2023-10-10 14:35:32,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M2_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 14:35:32,269] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M2_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 14:35:32,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M2_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 14:35:32,274] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M2_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 14:35:32,275] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M2_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 14:35:32,326] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M2_CKDL230032530-1A_H77VKDSX7_L3_R2_fastqc.html [2023-10-10 14:35:32,337] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 14:35:32,340] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 14:35:32,340] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 14:35:32,345] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 14:35:32,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 14:35:32,392] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 14:35:32,430] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M3_CKDL230032530-1A_H77VKDSX7_L3_R1_fastqc.html [2023-10-10 14:35:32,434] multiqc [DEBUG ] File ignored by hicexplorer 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File ignored by hicexplorer because it exceeded search pattern filesize limit: Chr_Read_Counts.R [2023-10-10 14:35:34,253] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Read_Counts.R [2023-10-10 14:35:34,259] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Chr_Read_Counts.R [2023-10-10 14:35:34,275] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Chr_Read_Counts.R [2023-10-10 14:35:34,477] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Chr_Read_Counts.pdf [2023-10-10 14:35:34,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2023-10-10 14:35:34,643] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2023-10-10 14:35:34,644] multiqc [DEBUG ] File ignored by lima/summary because it exceeded 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ignored by nanostat because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2023-10-10 14:35:34,718] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-10-10 14:35:34,721] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-10-10 14:35:34,721] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-10-10 14:35:34,727] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-10-10 14:35:34,748] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-10-10 14:35:34,778] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Pipeline_Runtime.txt [2023-10-10 14:35:34,781] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Pipeline_Runtime.txt [2023-10-10 14:35:34,786] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Pipeline_Runtime.txt [2023-10-10 14:35:34,803] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:34,806] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:34,806] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:34,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:34,832] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:34,840] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2023-10-10 14:35:34,844] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2023-10-10 14:35:34,858] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2023-10-10 14:35:34,878] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k27me3_G215M1.o1973335 [2023-10-10 14:35:34,881] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k27me3_G215M1.o1973335 [2023-10-10 14:35:34,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k27me3_G215M1.o1973335 [2023-10-10 14:35:34,937] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-10-10 14:35:34,940] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-10-10 14:35:34,941] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-10-10 14:35:34,946] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-10-10 14:35:34,974] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-10-10 14:35:34,981] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 14:35:34,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 14:35:34,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 14:35:35,005] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 14:35:35,009] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 14:35:35,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 14:35:35,078] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k27me3_G215M3.o1973337 [2023-10-10 14:35:35,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k27me3_G215M3.o1973337 [2023-10-10 14:35:35,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k27me3_G215M3.o1973337 [2023-10-10 14:35:35,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k27me3_G215M4.o1973338 [2023-10-10 14:35:35,106] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k27me3_G215M4.o1973338 [2023-10-10 14:35:35,112] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k27me3_G215M4.o1973338 [2023-10-10 14:35:35,135] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G215_k27me3_G215M2.o1973336 [2023-10-10 14:35:35,139] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G215_k27me3_G215M2.o1973336 [2023-10-10 14:35:35,146] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G215_k27me3_G215M2.o1973336 [2023-10-10 14:35:35,230] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-10-10 14:35:35,234] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-10-10 14:35:35,234] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-10-10 14:35:35,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-10-10 14:35:35,280] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-10-10 14:35:35,364] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:35,368] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:35,369] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:35,376] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:35,376] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:35,376] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:35,382] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:35,382] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:35,382] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:35,382] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:35,382] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:35,395] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:36,080] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M1_read_Peak_Union.out1 [2023-10-10 14:35:36,177] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:36,181] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:36,182] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:36,189] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:36,189] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:36,189] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:36,189] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:36,189] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:36,189] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:36,189] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:36,190] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:36,205] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:36,880] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M2_read_Peak_Union.out1 [2023-10-10 14:35:36,979] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:36,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:36,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:36,994] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:36,994] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:36,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:36,995] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:36,995] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:36,995] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:36,995] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:36,995] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:37,011] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:37,699] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M4_read_Peak_Union.out1 [2023-10-10 14:35:37,743] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:35:37,746] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:35:37,746] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:35:37,753] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:35:37,753] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:35:37,753] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:35:37,753] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:35:37,753] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:35:37,753] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:35:37,753] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:35:37,753] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:35:37,768] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:35:38,455] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215M3_read_Peak_Union.out1 [2023-10-10 14:35:38,493] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-10-10 14:35:38,500] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:38,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded 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ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G215_k27me3_G215M3.o1964779 [2023-10-10 14:35:38,547] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G215_k27me3_G215M3.o1964779 [2023-10-10 14:35:38,554] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G215_k27me3_G215M2.o1964778 [2023-10-10 14:35:38,563] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G215_k27me3_G215M2.o1964778 [2023-10-10 14:35:38,563] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G215_k27me3_G215M2.o1964778 [2023-10-10 14:35:38,572] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G215_k27me3_G215M2.o1964778 [2023-10-10 14:35:38,588] multiqc [DEBUG ] File ignored by nanostat because it exceeded 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] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-10-10 14:35:38,729] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-10-10 14:35:38,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-10-10 14:35:38,752] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-10-10 14:35:38,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 14:35:38,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 14:35:38,765] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 14:35:38,779] 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limit: Step_07_G215_k27me3_G215M4.o1964780 [2023-10-10 14:35:38,858] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2023-10-10 14:35:38,866] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:38,870] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:38,870] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:38,881] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:38,894] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:38,904] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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limit: Run_Jobs.sh [2023-10-10 14:35:39,815] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: normbigWig.qsub [2023-10-10 14:35:39,817] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: normbigWig.qsub [2023-10-10 14:35:39,818] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: normbigWig.qsub [2023-10-10 14:35:39,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: normbigWig.qsub [2023-10-10 14:35:39,840] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: normbigWig.qsub [2023-10-10 14:35:39,847] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: BAM_to_WIG.sh [2023-10-10 14:35:39,851] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: BAM_to_WIG.sh [2023-10-10 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exceeded search pattern filesize limit: bedGraphToBigWig [2023-10-10 14:35:40,027] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:40,031] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:40,032] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:40,045] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:40,068] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:40,078] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SICER.qsub [2023-10-10 14:35:40,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern 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ignored by vep/vep_html because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:41,728] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:41,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:41,728] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:41,728] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:41,728] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:41,728] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:41,729] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:41,729] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:41,735] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:41,794] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-10-10 14:35:41,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-10-10 14:35:41,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-10-10 14:35:41,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4-W400-G2400-E100.scoreisland.bed [2023-10-10 14:35:41,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3-W400-G2400-E100.scoreisland.bed [2023-10-10 14:35:41,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Chr_Peak_Counts.pdf [2023-10-10 14:35:41,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1-W400-G2400-E100.scoreisland.bed [2023-10-10 14:35:41,942] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2-W400-G2400-E100.scoreisland.bed [2023-10-10 14:35:41,943] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4-W400-G2400-E100.scoreisland.bed [2023-10-10 14:35:41,944] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3-W400-G2400-E100.scoreisland.bed [2023-10-10 14:35:41,944] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1-W400-G2400-E100.scoreisland.bed [2023-10-10 14:35:41,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2-W400-G2400-E100.scoreisland.bed [2023-10-10 14:35:41,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-10-10 14:35:41,956] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-10-10 14:35:41,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-10-10 14:35:41,959] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-10-10 14:35:41,965] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-10-10 14:35:41,987] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-10-10 14:35:42,000] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-10-10 14:35:42,005] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-10-10 14:35:42,005] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-10-10 14:35:42,011] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-10-10 14:35:42,026] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-10-10 14:35:42,067] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 14:35:42,071] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 14:35:42,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 14:35:42,086] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: chrom_state_legend.pdf [2023-10-10 14:35:42,112] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215_k27me3_Tracks_PileUp.txt [2023-10-10 14:35:42,114] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215_k27me3_Tracks_PileUp.txt [2023-10-10 14:35:42,114] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215_k27me3_Tracks_PileUp.txt [2023-10-10 14:35:42,121] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215_k27me3_Tracks_PileUp.txt [2023-10-10 14:35:42,131] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215_k27me3_Tracks_PileUp.txt [2023-10-10 14:35:42,139] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215_k27me3_Tracks_Wiggle.txt [2023-10-10 14:35:42,142] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215_k27me3_Tracks_Wiggle.txt [2023-10-10 14:35:42,143] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215_k27me3_Tracks_Wiggle.txt [2023-10-10 14:35:42,148] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215_k27me3_Tracks_Wiggle.txt [2023-10-10 14:35:42,157] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215_k27me3_Tracks_Wiggle.txt [2023-10-10 14:35:42,172] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G215_k27me3_Tracks_Wiggle_autoON.txt [2023-10-10 14:35:42,176] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G215_k27me3_Tracks_Wiggle_autoON.txt [2023-10-10 14:35:42,176] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G215_k27me3_Tracks_Wiggle_autoON.txt [2023-10-10 14:35:42,182] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G215_k27me3_Tracks_Wiggle_autoON.txt [2023-10-10 14:35:42,198] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G215_k27me3_Tracks_Wiggle_autoON.txt [2023-10-10 14:35:42,208] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:42,212] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:42,213] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:42,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:42,239] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-10-10 14:35:42,248] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: macs2.qsub [2023-10-10 14:35:42,252] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: macs2.qsub [2023-10-10 14:35:42,253] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: macs2.qsub [2023-10-10 14:35:42,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: macs2.qsub [2023-10-10 14:35:42,283] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: macs2.qsub [2023-10-10 14:35:42,291] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M4.o1964822 [2023-10-10 14:35:42,294] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M4.o1964822 [2023-10-10 14:35:42,295] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M4.o1964822 [2023-10-10 14:35:42,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M4.o1964822 [2023-10-10 14:35:42,319] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M4.o1964822 [2023-10-10 14:35:42,329] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M1.o1964819 [2023-10-10 14:35:42,332] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M1.o1964819 [2023-10-10 14:35:42,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M1.o1964819 [2023-10-10 14:35:42,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M1.o1964819 [2023-10-10 14:35:42,360] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M1.o1964819 [2023-10-10 14:35:42,369] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M2.o1964820 [2023-10-10 14:35:42,377] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M2.o1964820 [2023-10-10 14:35:42,378] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M2.o1964820 [2023-10-10 14:35:42,386] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M2.o1964820 [2023-10-10 14:35:42,412] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M2.o1964820 [2023-10-10 14:35:42,420] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M3.o1964821 [2023-10-10 14:35:42,423] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M3.o1964821 [2023-10-10 14:35:42,423] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M3.o1964821 [2023-10-10 14:35:42,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M3.o1964821 [2023-10-10 14:35:42,447] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G215_k27me3_G215M3.o1964821 [2023-10-10 14:35:42,457] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_macs2.sh [2023-10-10 14:35:42,461] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_macs2.sh [2023-10-10 14:35:42,467] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_macs2.sh [2023-10-10 14:35:42,516] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 14:35:42,519] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 14:35:42,525] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-10-10 14:35:42,545] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 14:35:42,548] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-10-10 14:35:42,569] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: overlap.R [2023-10-10 14:35:42,571] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: overlap.R [2023-10-10 14:35:42,572] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: overlap.R [2023-10-10 14:35:42,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: overlap.R [2023-10-10 14:35:42,598] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: overlap.R [2023-10-10 14:35:42,606] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: overlap.sh [2023-10-10 14:35:42,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: overlap.sh [2023-10-10 14:35:42,610] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: overlap.sh [2023-10-10 14:35:42,618] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: overlap.sh [2023-10-10 14:35:42,632] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: overlap.sh [2023-10-10 14:35:42,638] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-10-10 14:35:42,641] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-10-10 14:35:42,647] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-10-10 14:35:42,695] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Peak_Counts.sh [2023-10-10 14:35:42,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Peak_Counts.sh [2023-10-10 14:35:42,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-10-10 14:35:42,725] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-10-10 14:35:42,726] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-10-10 14:35:42,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-10-10 14:35:42,749] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-10-10 14:35:42,783] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-10-10 14:35:42,787] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-10-10 14:35:42,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-10-10 14:35:42,849] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:42,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:42,853] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:42,859] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:42,859] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:42,859] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:42,860] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:42,860] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:42,860] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:42,860] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:42,860] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:42,860] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:42,869] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bedToBigBed [2023-10-10 14:35:42,877] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-10-10 14:35:42,880] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-10-10 14:35:42,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-10-10 14:35:43,022] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 14:35:43,022] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 14:35:43,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Chr_Peak_Counts.pdf [2023-10-10 14:35:43,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 14:35:43,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 14:35:43,024] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M4_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 14:35:43,025] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M2_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 14:35:43,026] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M1_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 14:35:43,026] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G215M3_narrow_MACS2_peaks.narrowPeak.bed [2023-10-10 14:35:43,027] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-10-10 14:35:43,375] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.1.2 [2023-10-10 14:35:43,613] multiqc.modules.macs2.macs2 [INFO ] Found 8 logs [2023-10-10 14:35:43,622] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.1.2 [2023-10-10 14:35:43,656] multiqc.modules.picard.picard [INFO ] Found 4 InsertSizeMetrics reports [2023-10-10 14:35:43,668] multiqc.modules.samtools.samtools [INFO ] Found 4 flagstat reports [2023-10-10 14:35:43,671] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M4_idxstats [2023-10-10 14:35:43,671] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M3_idxstats [2023-10-10 14:35:43,672] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M2_idxstats [2023-10-10 14:35:43,672] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M1_idxstats [2023-10-10 14:35:43,672] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M4_idxstats [2023-10-10 14:35:43,673] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M3_idxstats [2023-10-10 14:35:43,673] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M2_idxstats [2023-10-10 14:35:43,674] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G215M1_idxstats [2023-10-10 14:35:43,678] multiqc.modules.samtools.samtools [INFO ] Found 4 idxstats reports [2023-10-10 14:35:43,686] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M3_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 14:35:43,689] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M2_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 14:35:43,690] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M1_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 14:35:43,691] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G215M4_CKDL230032530-1A_H77VKDSX7_L3_R1' [2023-10-10 14:35:43,692] multiqc.modules.bowtie2.bowtie2 [INFO ] Found 5 reports [2023-10-10 14:35:45,102] multiqc.modules.fastqc.fastqc [INFO ] Found 8 reports [2023-10-10 14:35:45,390] multiqc [INFO ] Compressing plot data [2023-10-10 14:35:45,894] multiqc [INFO ] Report : ../../../../net/waxman-server/mnt/data/waxmanlabvm_home/mpyatkov/G215_k27me3_MULTIQC/multiqc_report.html [2023-10-10 14:35:45,894] multiqc [INFO ] Data : ../../../../net/waxman-server/mnt/data/waxmanlabvm_home/mpyatkov/G215_k27me3_MULTIQC/multiqc_data [2023-10-10 14:35:45,894] multiqc [DEBUG ] Moving data file from '/scratch/tmp0s9mw9dl/multiqc_data' to '/net/waxman-server/mnt/data/waxmanlabvm_home/mpyatkov/G215_k27me3_MULTIQC/multiqc_data' [2023-10-10 14:35:47,146] multiqc [INFO ] MultiQC complete