Sample	Bowtie 2 / HiSAT2_mqc-generalstats-bowtie_2_hisat2-overall_alignment_rate	Cutadapt_mqc-generalstats-cutadapt-percent_trimmed	FastQC_mqc-generalstats-fastqc-percent_duplicates	FastQC_mqc-generalstats-fastqc-percent_gc	FastQC_mqc-generalstats-fastqc-avg_sequence_length	FastQC_mqc-generalstats-fastqc-percent_fails	FastQC_mqc-generalstats-fastqc-total_sequences	MACS2_mqc-generalstats-macs2-d	MACS2_mqc-generalstats-macs2-peak_count	Picard_mqc-generalstats-picard-summed_median	Picard_mqc-generalstats-picard-summed_mean	Samtools_mqc-generalstats-samtools-flagstat_total	Samtools_mqc-generalstats-samtools-mapped_passed
G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1	96.73	8.912768297145648	11.348596913980515	45.0	150.0	9.090909090909092	4502251.0						
G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R2		8.791858904007263	10.276108220137829	45.0	150.0	9.090909090909092	4502251.0						
G208M11_TRIM_broad_MACS2								261.0	11610				
G208M11_TRIM_narrow_MACS2								261.0	6765				
G208M11_TRIM_sorted_mapped										229	262.521999		
G208M11_broad_MACS2								261.0	11608				
G208M11_narrow_MACS2								261.0	6766				
G208M11_sorted_mapped										229	262.523937		
G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1	97.0	7.359719684563181	11.356578112271222	45.0	150.0	9.090909090909092	4401044.0						
G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R2		7.2712804968768046	10.304169557093886	45.0	150.0	9.090909090909092	4401044.0						
G208M12_TRIM_broad_MACS2								258.0	13490				
G208M12_TRIM_narrow_MACS2								258.0	8006				
G208M12_TRIM_sorted_mapped										224	259.38039		
G208M12_broad_MACS2								258.0	13488				
G208M12_narrow_MACS2								258.0	8007				
G208M12_sorted_mapped										224	259.381096		
G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1	97.1	8.046461557100367	11.786367251334894	45.0	150.0	9.090909090909092	4883672.0						
G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R2		7.970210799148269	10.763973054079429	45.0	150.0	9.090909090909092	4883672.0						
G208M13_TRIM_broad_MACS2								273.0	10547				
G208M13_TRIM_narrow_MACS2								273.0	3933				
G208M13_TRIM_sorted_mapped										251	274.209489		
G208M13_broad_MACS2								273.0	10553				
G208M13_narrow_MACS2								273.0	3932				
G208M13_sorted_mapped										251	274.211281		
G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1	96.96	7.793779377777955	10.390672864052547	45.0	150.0	9.090909090909092	3963975.0						
G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R2		7.718310157415112	9.630458839574075	45.0	150.0	9.090909090909092	3963975.0						
G208M14_TRIM_broad_MACS2								259.0	10842				
G208M14_TRIM_narrow_MACS2								259.0	5873				
G208M14_TRIM_sorted_mapped										226	259.763487		
G208M14_broad_MACS2								259.0	10837				
G208M14_narrow_MACS2								259.0	5874				
G208M14_sorted_mapped										226	259.764308		
README_Bowtie2.sh	95.16												
flagstat_G208M11_TRIM												9004502	8710081
flagstat_G208M12_TRIM												8802088	8538149
flagstat_G208M13_TRIM												9767344	9483807
flagstat_G208M14_TRIM												7927950	7686775