{
    "report_data_sources": {
        "MACS2": {
            "all_sections": {
                "G208M11_broad_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11_TRIM/fastq/bowtie2/G208M11_MACS2_output/G208M11_broad_MACS2_peaks.xls",
                "G208M11_narrow_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11_TRIM/fastq/bowtie2/G208M11_MACS2_output/G208M11_narrow_MACS2_peaks.xls",
                "G208M11_TRIM_broad_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11_TRIM/fastq/bowtie2/G208M11_TRIM_MACS2_output/G208M11_TRIM_broad_MACS2_peaks.xls",
                "G208M11_TRIM_narrow_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11_TRIM/fastq/bowtie2/G208M11_TRIM_MACS2_output/G208M11_TRIM_narrow_MACS2_peaks.xls",
                "G208M12_broad_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12_TRIM/fastq/bowtie2/G208M12_MACS2_output/G208M12_broad_MACS2_peaks.xls",
                "G208M12_narrow_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12_TRIM/fastq/bowtie2/G208M12_MACS2_output/G208M12_narrow_MACS2_peaks.xls",
                "G208M12_TRIM_broad_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12_TRIM/fastq/bowtie2/G208M12_TRIM_MACS2_output/G208M12_TRIM_broad_MACS2_peaks.xls",
                "G208M12_TRIM_narrow_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12_TRIM/fastq/bowtie2/G208M12_TRIM_MACS2_output/G208M12_TRIM_narrow_MACS2_peaks.xls",
                "G208M13_TRIM_narrow_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13_TRIM/fastq/bowtie2/G208M13_TRIM_MACS2_output/G208M13_TRIM_narrow_MACS2_peaks.xls",
                "G208M13_TRIM_broad_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13_TRIM/fastq/bowtie2/G208M13_TRIM_MACS2_output/G208M13_TRIM_broad_MACS2_peaks.xls",
                "G208M13_broad_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13_TRIM/fastq/bowtie2/G208M13_MACS2_output/G208M13_broad_MACS2_peaks.xls",
                "G208M13_narrow_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13_TRIM/fastq/bowtie2/G208M13_MACS2_output/G208M13_narrow_MACS2_peaks.xls",
                "G208M14_TRIM_narrow_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14_TRIM/fastq/bowtie2/G208M14_TRIM_MACS2_output/G208M14_TRIM_narrow_MACS2_peaks.xls",
                "G208M14_TRIM_broad_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14_TRIM/fastq/bowtie2/G208M14_TRIM_MACS2_output/G208M14_TRIM_broad_MACS2_peaks.xls",
                "G208M14_narrow_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14_TRIM/fastq/bowtie2/G208M14_MACS2_output/G208M14_narrow_MACS2_peaks.xls",
                "G208M14_broad_MACS2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14_TRIM/fastq/bowtie2/G208M14_MACS2_output/G208M14_broad_MACS2_peaks.xls"
            }
        },
        "Picard": {
            "InsertSizeMetrics": {
                "G208M11_sorted_mapped": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11_TRIM/fastq/bowtie2/CollectInsertSizeMetrics/G208M11_metrics",
                "G208M11_TRIM_sorted_mapped": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11_TRIM/fastq/bowtie2/CollectInsertSizeMetrics/G208M11_TRIM_metrics",
                "G208M12_sorted_mapped": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12_TRIM/fastq/bowtie2/CollectInsertSizeMetrics/G208M12_metrics",
                "G208M12_TRIM_sorted_mapped": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12_TRIM/fastq/bowtie2/CollectInsertSizeMetrics/G208M12_TRIM_metrics",
                "G208M13_TRIM_sorted_mapped": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13_TRIM/fastq/bowtie2/CollectInsertSizeMetrics/G208M13_TRIM_metrics",
                "G208M13_sorted_mapped": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13_TRIM/fastq/bowtie2/CollectInsertSizeMetrics/G208M13_metrics",
                "G208M14_TRIM_sorted_mapped": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14_TRIM/fastq/bowtie2/CollectInsertSizeMetrics/G208M14_TRIM_metrics",
                "G208M14_sorted_mapped": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14_TRIM/fastq/bowtie2/CollectInsertSizeMetrics/G208M14_metrics"
            }
        },
        "Samtools": {
            "flagstat": {
                "flagstat_G208M11_TRIM": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11_TRIM/fastq/bowtie2/flagstat_G208M11_TRIM.txt",
                "flagstat_G208M12_TRIM": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12_TRIM/fastq/bowtie2/flagstat_G208M12_TRIM.txt",
                "flagstat_G208M13_TRIM": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13_TRIM/fastq/bowtie2/flagstat_G208M13_TRIM.txt",
                "flagstat_G208M14_TRIM": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14_TRIM/fastq/bowtie2/flagstat_G208M14_TRIM.txt"
            },
            "idxstats": {
                "G208M11_TRIM_idxstats": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11_TRIM/fastq/bowtie2/G208M11_TRIM_idxstats.out",
                "G208M12_TRIM_idxstats": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12_TRIM/fastq/bowtie2/G208M12_TRIM_idxstats.out",
                "G208M13_TRIM_idxstats": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13_TRIM/fastq/bowtie2/G208M13_TRIM_idxstats.out",
                "G208M14_TRIM_idxstats": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14_TRIM/fastq/bowtie2/G208M14_TRIM_idxstats.out"
            }
        },
        "Bowtie 2 / HiSAT2": {
            "all_sections": {
                "G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/04_Bowtie2/Step_04_G208_SG_CUTRUN_K27ac_G208M12_TRIM.o76985",
                "G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/04_Bowtie2/Step_04_G208_SG_CUTRUN_K27ac_G208M13_TRIM.o76986",
                "G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/04_Bowtie2/Step_04_G208_SG_CUTRUN_K27ac_G208M11_TRIM.o76984",
                "README_Bowtie2.sh": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/04_Bowtie2/README_Bowtie2.sh",
                "G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/04_Bowtie2/Step_04_G208_SG_CUTRUN_K27ac_G208M14_TRIM.o76987"
            }
        },
        "Cutadapt": {
            "all_sections": {
                "G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11_TRIM/fastq/trim_galore_output/G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt",
                "G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11_TRIM/fastq/trim_galore_output/G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt",
                "G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12_TRIM/fastq/trim_galore_output/G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt",
                "G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12_TRIM/fastq/trim_galore_output/G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt",
                "G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13_TRIM/fastq/trim_galore_output/G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt",
                "G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13_TRIM/fastq/trim_galore_output/G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt",
                "G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14_TRIM/fastq/trim_galore_output/G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt",
                "G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14_TRIM/fastq/trim_galore_output/G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt"
            }
        },
        "FastQC": {
            "all_sections": {
                "G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M13_TRIM_FASTQC/G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R2_fastqc.zip",
                "G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M13_TRIM_FASTQC/G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1_fastqc.zip",
                "G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M11_TRIM_FASTQC/G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R2_fastqc.zip",
                "G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M11_TRIM_FASTQC/G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1_fastqc.zip",
                "G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M12_TRIM_FASTQC/G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R2_fastqc.zip",
                "G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M12_TRIM_FASTQC/G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1_fastqc.zip",
                "G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R2": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M14_TRIM_FASTQC/G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R2_fastqc.zip",
                "G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1": "/projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M14_TRIM_FASTQC/G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1_fastqc.zip"
            }
        }
    },
    "report_general_stats_data": [
        {
            "G208M11_broad_MACS2": {
                "peak_count": 11608,
                "fragment_size": 261.0,
                "treatment_fragments_total": 2757059.0,
                "d": 261.0
            },
            "G208M11_narrow_MACS2": {
                "peak_count": 6766,
                "fragment_size": 261.0,
                "treatment_fragments_total": 2757059.0,
                "d": 261.0
            },
            "G208M11_TRIM_broad_MACS2": {
                "peak_count": 11610,
                "fragment_size": 261.0,
                "treatment_fragments_total": 2756421.0,
                "d": 261.0
            },
            "G208M11_TRIM_narrow_MACS2": {
                "peak_count": 6765,
                "fragment_size": 261.0,
                "treatment_fragments_total": 2756421.0,
                "d": 261.0
            },
            "G208M12_broad_MACS2": {
                "peak_count": 13488,
                "fragment_size": 258.0,
                "treatment_fragments_total": 2812022.0,
                "d": 258.0
            },
            "G208M12_narrow_MACS2": {
                "peak_count": 8007,
                "fragment_size": 258.0,
                "treatment_fragments_total": 2812022.0,
                "d": 258.0
            },
            "G208M12_TRIM_broad_MACS2": {
                "peak_count": 13490,
                "fragment_size": 258.0,
                "treatment_fragments_total": 2811364.0,
                "d": 258.0
            },
            "G208M12_TRIM_narrow_MACS2": {
                "peak_count": 8006,
                "fragment_size": 258.0,
                "treatment_fragments_total": 2811364.0,
                "d": 258.0
            },
            "G208M13_TRIM_narrow_MACS2": {
                "peak_count": 3933,
                "fragment_size": 273.0,
                "treatment_fragments_total": 2936691.0,
                "d": 273.0
            },
            "G208M13_TRIM_broad_MACS2": {
                "peak_count": 10547,
                "fragment_size": 273.0,
                "treatment_fragments_total": 2936691.0,
                "d": 273.0
            },
            "G208M13_broad_MACS2": {
                "peak_count": 10553,
                "fragment_size": 273.0,
                "treatment_fragments_total": 2937422.0,
                "d": 273.0
            },
            "G208M13_narrow_MACS2": {
                "peak_count": 3932,
                "fragment_size": 273.0,
                "treatment_fragments_total": 2937422.0,
                "d": 273.0
            },
            "G208M14_TRIM_narrow_MACS2": {
                "peak_count": 5873,
                "fragment_size": 259.0,
                "treatment_fragments_total": 2574306.0,
                "d": 259.0
            },
            "G208M14_TRIM_broad_MACS2": {
                "peak_count": 10842,
                "fragment_size": 259.0,
                "treatment_fragments_total": 2574306.0,
                "d": 259.0
            },
            "G208M14_narrow_MACS2": {
                "peak_count": 5874,
                "fragment_size": 259.0,
                "treatment_fragments_total": 2574904.0,
                "d": 259.0
            },
            "G208M14_broad_MACS2": {
                "peak_count": 10837,
                "fragment_size": 259.0,
                "treatment_fragments_total": 2574904.0,
                "d": 259.0
            }
        },
        {
            "G208M11_sorted_mapped": {
                "total_count": 2741132,
                "meansum": 719612764.476684,
                "total_pairs": 2741132.0,
                "summed_mean": 262.523937,
                "summed_median": 229
            },
            "G208M11_TRIM_sorted_mapped": {
                "total_count": 2740507,
                "meansum": 719443375.913493,
                "total_pairs": 2740507.0,
                "summed_mean": 262.521999,
                "summed_median": 229
            },
            "G208M12_sorted_mapped": {
                "total_count": 2795085,
                "meansum": 724992210.71316,
                "total_pairs": 2795085.0,
                "summed_mean": 259.381096,
                "summed_median": 224
            },
            "G208M12_TRIM_sorted_mapped": {
                "total_count": 2794425,
                "meansum": 724819046.32575,
                "total_pairs": 2794425.0,
                "summed_mean": 259.38039,
                "summed_median": 224
            },
            "G208M13_TRIM_sorted_mapped": {
                "total_count": 2922387,
                "meansum": 801346245.930243,
                "total_pairs": 2922387.0,
                "summed_mean": 274.209489,
                "summed_median": 251
            },
            "G208M13_sorted_mapped": {
                "total_count": 2923109,
                "meansum": 801549463.3926289,
                "total_pairs": 2923109.0,
                "summed_mean": 274.211281,
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            },
            "G208M14_TRIM_sorted_mapped": {
                "total_count": 2559230,
                "meansum": 664794508.83501,
                "total_pairs": 2559230.0,
                "summed_mean": 259.763487,
                "summed_median": 226
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            "G208M14_sorted_mapped": {
                "total_count": 2559820,
                "meansum": 664949870.9045601,
                "total_pairs": 2559820.0,
                "summed_mean": 259.764308,
                "summed_median": 226
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        },
        {
            "flagstat_G208M11_TRIM": {
                "total_passed": 9004502,
                "total_failed": 0,
                "duplicates_passed": 0,
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                "mapped_passed": 8710081,
                "mapped_failed": 0,
                "mapped_passed_pct": 96.73,
                "mapped_failed_pct": NaN,
                "paired in sequencing_passed": 9004502,
                "paired in sequencing_failed": 0,
                "read1_passed": 4502251,
                "read1_failed": 0,
                "read2_passed": 4502251,
                "read2_failed": 0,
                "properly paired_passed": 6120374,
                "properly paired_failed": 0,
                "properly paired_passed_pct": 67.97,
                "properly paired_failed_pct": NaN,
                "with itself and mate mapped_passed": 8511886,
                "with itself and mate mapped_failed": 0,
                "singletons_passed": 198195,
                "singletons_failed": 0,
                "singletons_passed_pct": 2.2,
                "singletons_failed_pct": NaN,
                "with mate mapped to a different chr_passed": 93048,
                "with mate mapped to a different chr_failed": 0,
                "with mate mapped to a different chr (mapQ >= 5)_passed": 50849,
                "with mate mapped to a different chr (mapQ >= 5)_failed": 0,
                "flagstat_total": 9004502
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            "flagstat_G208M12_TRIM": {
                "total_passed": 8802088,
                "total_failed": 0,
                "duplicates_passed": 0,
                "duplicates_failed": 0,
                "mapped_passed": 8538149,
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                "mapped_passed_pct": 97.0,
                "mapped_failed_pct": NaN,
                "paired in sequencing_passed": 8802088,
                "paired in sequencing_failed": 0,
                "read1_passed": 4401044,
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                "read2_passed": 4401044,
                "read2_failed": 0,
                "properly paired_passed": 6141282,
                "properly paired_failed": 0,
                "properly paired_passed_pct": 69.77,
                "properly paired_failed_pct": NaN,
                "with itself and mate mapped_passed": 8365994,
                "with itself and mate mapped_failed": 0,
                "singletons_passed": 172155,
                "singletons_failed": 0,
                "singletons_passed_pct": 1.96,
                "singletons_failed_pct": NaN,
                "with mate mapped to a different chr_passed": 83864,
                "with mate mapped to a different chr_failed": 0,
                "with mate mapped to a different chr (mapQ >= 5)_passed": 51515,
                "with mate mapped to a different chr (mapQ >= 5)_failed": 0,
                "flagstat_total": 8802088
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            "flagstat_G208M13_TRIM": {
                "total_passed": 9767344,
                "total_failed": 0,
                "duplicates_passed": 0,
                "duplicates_failed": 0,
                "mapped_passed": 9483807,
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                "mapped_passed_pct": 97.1,
                "mapped_failed_pct": NaN,
                "paired in sequencing_passed": 9767344,
                "paired in sequencing_failed": 0,
                "read1_passed": 4883672,
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                "read2_passed": 4883672,
                "read2_failed": 0,
                "properly paired_passed": 6706638,
                "properly paired_failed": 0,
                "properly paired_passed_pct": 68.66,
                "properly paired_failed_pct": NaN,
                "with itself and mate mapped_passed": 9300530,
                "with itself and mate mapped_failed": 0,
                "singletons_passed": 183277,
                "singletons_failed": 0,
                "singletons_passed_pct": 1.88,
                "singletons_failed_pct": NaN,
                "with mate mapped to a different chr_passed": 124546,
                "with mate mapped to a different chr_failed": 0,
                "with mate mapped to a different chr (mapQ >= 5)_passed": 67780,
                "with mate mapped to a different chr (mapQ >= 5)_failed": 0,
                "flagstat_total": 9767344
            },
            "flagstat_G208M14_TRIM": {
                "total_passed": 7927950,
                "total_failed": 0,
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