Sample	total_reads	paired_total	paired_aligned_none	paired_aligned_one	paired_aligned_multi	paired_aligned_discord_one	paired_aligned_mate_none	paired_aligned_mate_one	paired_aligned_mate_multi	overall_alignment_rate	paired_aligned_mate_multi_halved	paired_aligned_mate_none_halved	paired_aligned_mate_one_halved
G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1	4502251	4502251	1442064	2800234	259953	1061633	294421	236751	229690	96.73	114845.0	147210.5	118375.5
G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1	4401044	4401044	1330403	2852376	218265	1002106	263939	206445	186210	97.0	93105.0	131969.5	103222.5
G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1	4883672	4883672	1530353	2990795	362524	1127222	283537	232273	290452	97.1	145226.0	141768.5	116136.5
G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1	3963975	3963975	1140539	2610792	212644	843555	241175	189862	162931	96.96	81465.5	120587.5	94931.0
README_Bowtie2.sh	250000	250000								95.16