[2023-08-21 11:31:27,187] multiqc [DEBUG ] This is MultiQC v1.12 [2023-08-21 11:31:27,187] multiqc [DEBUG ] No MultiQC config found: /usr/lib/python3.8/site-packages/multiqc_config.yaml [2023-08-21 11:31:27,187] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2023-08-21 11:31:27,188] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-08-21 11:31:27,188] multiqc [DEBUG ] Command used: /usr/bin/multiqc -o G208_SG_CUTRUN_K27ac_TRIMMED_multiqc ./G208M11_TRIM ./G208M12_TRIM ./G208M13_TRIM ./G208M14_TRIM ./Scripts/02_FASTQC ./Scripts/03_Read_Length ./Scripts/04_Bowtie2 ./Scripts/07_CollectInsertSizeMetrics [2023-08-21 11:31:27,413] multiqc [WARNING] MultiQC Version v1.15 now available! [2023-08-21 11:31:27,413] multiqc [DEBUG ] Command : /usr/bin/multiqc -o G208_SG_CUTRUN_K27ac_TRIMMED_multiqc ./G208M11_TRIM ./G208M12_TRIM ./G208M13_TRIM ./G208M14_TRIM ./Scripts/02_FASTQC ./Scripts/03_Read_Length ./Scripts/04_Bowtie2 ./Scripts/07_CollectInsertSizeMetrics [2023-08-21 11:31:27,413] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac [2023-08-21 11:31:27,413] multiqc [DEBUG ] Template : default [2023-08-21 11:31:27,414] multiqc [DEBUG ] Running Python 3.8.1 (default, Dec 26 2019, 14:42:08) [GCC 9.2.0] [2023-08-21 11:31:27,415] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2023-08-21 11:31:27,415] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpt0bnqgza [2023-08-21 11:31:27,554] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11_TRIM [2023-08-21 11:31:27,554] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12_TRIM [2023-08-21 11:31:27,554] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13_TRIM [2023-08-21 11:31:27,554] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14_TRIM [2023-08-21 11:31:27,554] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC [2023-08-21 11:31:27,554] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/03_Read_Length [2023-08-21 11:31:27,554] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/04_Bowtie2 [2023-08-21 11:31:27,554] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/07_CollectInsertSizeMetrics [2023-08-21 11:31:28,005] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz [2023-08-21 11:31:28,005] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz [2023-08-21 11:31:28,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_sorted_mapped.bam [2023-08-21 11:31:28,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_alignments.bam [2023-08-21 11:31:28,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_alignments.bam.bai [2023-08-21 11:31:28,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_sorted_mapped.bam.bai [2023-08-21 11:31:28,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_alignments.bam.bai [2023-08-21 11:31:28,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_sorted_mapped.bam.bai [2023-08-21 11:31:28,054] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:28,057] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:28,058] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:28,062] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:28,062] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:28,068] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:28,070] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_broad_MACS2_peaks.broadPeak.bed [2023-08-21 11:31:28,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_narrow_MACS2_summits.bed [2023-08-21 11:31:28,086] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:28,089] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:28,089] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:28,102] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:28,103] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:28,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:28,103] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:28,103] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:28,103] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:28,103] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:28,103] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:28,118] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:28,453] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:28,474] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_narrow_MACS2_peaks.narrowPeak.bed [2023-08-21 11:31:28,482] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_read_MACS2_peaks.out1 [2023-08-21 11:31:28,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_read_MACS2_peaks.out1 [2023-08-21 11:31:28,484] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_read_MACS2_peaks.out1 [2023-08-21 11:31:28,488] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11_read_MACS2_peaks.out1 [2023-08-21 11:31:28,488] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_read_MACS2_peaks.out1 [2023-08-21 11:31:28,488] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M11_read_MACS2_peaks.out1 [2023-08-21 11:31:28,488] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M11_read_MACS2_peaks.out1 [2023-08-21 11:31:28,488] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M11_read_MACS2_peaks.out1 [2023-08-21 11:31:28,489] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M11_read_MACS2_peaks.out1 [2023-08-21 11:31:28,489] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M11_read_MACS2_peaks.out1 [2023-08-21 11:31:28,693] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_read_MACS2_peaks.out1 [2023-08-21 11:31:28,761] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:28,763] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:28,763] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:28,767] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:28,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:28,767] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:28,767] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:28,767] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:28,767] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:28,767] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:28,974] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:28,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:29,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:29,001] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:29,005] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:29,005] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:29,005] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:29,005] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:29,005] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:29,005] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:29,005] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:29,005] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:29,012] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:29,384] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:29,419] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:29,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:29,422] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:29,426] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:29,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:29,434] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:29,439] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-21 11:31:29,446] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:31:29,450] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:31:29,466] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-21 11:31:29,468] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-21 11:31:29,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-21 11:31:29,471] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-21 11:31:29,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-21 11:31:29,484] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_read_Peak_Union.out1 [2023-08-21 11:31:29,488] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_read_Peak_Union.out1 [2023-08-21 11:31:29,488] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_read_Peak_Union.out1 [2023-08-21 11:31:29,493] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M11_read_Peak_Union.out1 [2023-08-21 11:31:29,493] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11_read_Peak_Union.out1 [2023-08-21 11:31:29,493] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_read_Peak_Union.out1 [2023-08-21 11:31:29,493] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M11_read_Peak_Union.out1 [2023-08-21 11:31:29,493] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M11_read_Peak_Union.out1 [2023-08-21 11:31:29,493] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M11_read_Peak_Union.out1 [2023-08-21 11:31:29,493] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M11_read_Peak_Union.out1 [2023-08-21 11:31:29,494] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M11_read_Peak_Union.out1 [2023-08-21 11:31:29,504] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M11_read_Peak_Union.out1 [2023-08-21 11:31:30,021] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_read_Peak_Union.out1 [2023-08-21 11:31:30,049] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_StrgtPksRm_tab.bed [2023-08-21 11:31:30,049] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_StrgtPksRm_tab.bed [2023-08-21 11:31:30,049] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_filtered_StrgtPks.bam [2023-08-21 11:31:30,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_filtered_StrgtPks_sorted.bam [2023-08-21 11:31:30,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_StrgtPks_tab.bed [2023-08-21 11:31:30,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_filtered_StrgtPks.bam.bai [2023-08-21 11:31:30,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_filtered_StrgtPks_sorted.bam.bai [2023-08-21 11:31:30,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_filtered_StrgtPks_sorted.bam.bai [2023-08-21 11:31:30,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_StrgtPks_tab.bed [2023-08-21 11:31:30,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_filtered_StrgtPks.bam.bai [2023-08-21 11:31:30,082] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:30,086] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:30,087] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:30,094] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:30,094] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:30,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:30,095] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:30,095] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:30,095] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:30,095] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:30,095] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:30,109] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:30,446] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:30,467] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak.bed [2023-08-21 11:31:30,492] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:30,496] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:30,497] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:30,504] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:30,504] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:30,518] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:30,520] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_broad_MACS2_peaks.broadPeak.bed [2023-08-21 11:31:30,525] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_narrow_MACS2_summits.bed [2023-08-21 11:31:30,557] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:30,561] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:30,561] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:30,567] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:30,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:30,567] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:30,567] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:30,567] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:30,567] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:30,567] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:30,781] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:30,842] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:30,846] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:30,847] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:30,852] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:30,852] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:30,852] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:30,853] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:30,853] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:30,853] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:30,853] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:30,853] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:30,861] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:31,235] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:31,267] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:31,269] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:31,270] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:31,279] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:31,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:31,280] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M11_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:31,280] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M11_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:31,280] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M11_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:31,280] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M11_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:31,280] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M11_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:31,480] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:31,524] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:31,527] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:31,528] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:31,533] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:31,533] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:31,539] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:31,541] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-21 11:31:31,541] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-21 11:31:31,541] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-21 11:31:31,541] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-21 11:31:31,546] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:31:31,549] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:31:31,561] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-21 11:31:31,562] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-21 11:31:31,573] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_read_SICER.out1 [2023-08-21 11:31:31,575] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_read_SICER.out1 [2023-08-21 11:31:31,575] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_read_SICER.out1 [2023-08-21 11:31:31,579] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M11_read_SICER.out1 [2023-08-21 11:31:31,579] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11_read_SICER.out1 [2023-08-21 11:31:31,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_read_SICER.out1 [2023-08-21 11:31:31,579] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M11_read_SICER.out1 [2023-08-21 11:31:31,579] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M11_read_SICER.out1 [2023-08-21 11:31:31,579] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M11_read_SICER.out1 [2023-08-21 11:31:31,579] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M11_read_SICER.out1 [2023-08-21 11:31:31,579] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M11_read_SICER.out1 [2023-08-21 11:31:31,588] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M11_read_SICER.out1 [2023-08-21 11:31:32,059] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_read_SICER.out1 [2023-08-21 11:31:32,134] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland.bb [2023-08-21 11:31:32,138] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland.bb [2023-08-21 11:31:32,139] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland.bb [2023-08-21 11:31:32,145] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland.bb [2023-08-21 11:31:32,146] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland.bb [2023-08-21 11:31:32,159] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland.bb [2023-08-21 11:31:32,171] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11-W400-G2400-E100-islandfiltered.bed [2023-08-21 11:31:32,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11-1-removed.bed [2023-08-21 11:31:32,196] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:32,200] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:32,200] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:32,208] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:32,208] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:32,208] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:32,209] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:32,209] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:32,209] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:32,209] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:32,209] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:32,209] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:32,209] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:42,448] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:43,092] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-08-21 11:31:43,115] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland [2023-08-21 11:31:43,118] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland [2023-08-21 11:31:43,118] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland [2023-08-21 11:31:43,124] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland [2023-08-21 11:31:43,124] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland [2023-08-21 11:31:43,124] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland [2023-08-21 11:31:43,124] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland [2023-08-21 11:31:43,124] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland [2023-08-21 11:31:43,124] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland [2023-08-21 11:31:43,124] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland [2023-08-21 11:31:43,574] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11-W400-G2400-E100.scoreisland [2023-08-21 11:31:43,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-08-21 11:31:43,614] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-21 11:31:43,625] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:31:43,629] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:31:43,643] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11-W400-G2400-E100.scoreisland_common.bed [2023-08-21 11:31:43,643] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-21 11:31:43,644] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11-W400-G2400-E100.scoreisland_unique.bed [2023-08-21 11:31:43,644] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-08-21 11:31:43,649] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_metrics [2023-08-21 11:31:43,651] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_metrics [2023-08-21 11:31:43,651] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_metrics [2023-08-21 11:31:43,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_metrics [2023-08-21 11:31:43,676] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_metrics [2023-08-21 11:31:43,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_TRIM_hist.pdf [2023-08-21 11:31:43,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_hist.pdf [2023-08-21 11:31:43,682] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_TRIM_metrics [2023-08-21 11:31:43,684] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_TRIM_metrics [2023-08-21 11:31:43,684] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_TRIM_metrics [2023-08-21 11:31:43,689] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_TRIM_metrics [2023-08-21 11:31:43,703] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_TRIM_metrics [2023-08-21 11:31:43,704] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R2_val_2.fq.gz [2023-08-21 11:31:43,709] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:31:43,711] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:31:43,711] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:31:43,716] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:31:43,730] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:31:43,731] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1_val_1.fq.gz [2023-08-21 11:31:43,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:31:43,741] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:31:43,742] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:31:43,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:31:43,757] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:31:43,758] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz [2023-08-21 11:31:43,761] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz [2023-08-21 11:31:43,763] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_sorted_mapped.bam [2023-08-21 11:31:43,764] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_alignments.bam.bai [2023-08-21 11:31:43,764] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_sorted_mapped.bam.bai [2023-08-21 11:31:43,792] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_alignments.bam.bai [2023-08-21 11:31:43,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_alignments.bam [2023-08-21 11:31:43,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_sorted_mapped.bam.bai [2023-08-21 11:31:43,818] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_TRIM_read_SICER.out1 [2023-08-21 11:31:43,821] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_TRIM_read_SICER.out1 [2023-08-21 11:31:43,821] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_TRIM_read_SICER.out1 [2023-08-21 11:31:43,827] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M12_TRIM_read_SICER.out1 [2023-08-21 11:31:43,827] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_TRIM_read_SICER.out1 [2023-08-21 11:31:43,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_TRIM_read_SICER.out1 [2023-08-21 11:31:43,827] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12_TRIM_read_SICER.out1 [2023-08-21 11:31:43,827] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12_TRIM_read_SICER.out1 [2023-08-21 11:31:43,828] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12_TRIM_read_SICER.out1 [2023-08-21 11:31:43,828] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12_TRIM_read_SICER.out1 [2023-08-21 11:31:43,828] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12_TRIM_read_SICER.out1 [2023-08-21 11:31:43,838] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M12_TRIM_read_SICER.out1 [2023-08-21 11:31:44,316] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_TRIM_read_SICER.out1 [2023-08-21 11:31:44,342] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM-W400-G2400-E100-islandfiltered.bed [2023-08-21 11:31:44,372] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:31:44,374] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:31:44,374] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:31:44,379] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:31:44,380] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:31:44,380] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:31:44,380] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:31:44,380] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:31:44,380] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:31:44,380] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:31:44,832] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:31:44,863] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM-1-removed.bed [2023-08-21 11:31:44,863] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-08-21 11:31:44,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:31:44,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:31:44,876] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:31:44,881] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:31:44,881] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:31:44,887] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:31:44,898] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:44,901] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:44,902] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:44,910] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:44,910] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:44,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:44,910] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:44,910] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:44,910] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:44,911] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:44,911] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:44,911] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:44,911] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:55,614] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:31:56,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-21 11:31:56,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM-W400-G2400-E100.scoreisland_unique.bed [2023-08-21 11:31:56,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:31:56,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:31:56,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM-W400-G2400-E100.scoreisland_common.bed [2023-08-21 11:31:56,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-08-21 11:31:56,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-08-21 11:31:56,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-21 11:31:56,290] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_read_Peak_Union.out1 [2023-08-21 11:31:56,293] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_read_Peak_Union.out1 [2023-08-21 11:31:56,293] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_read_Peak_Union.out1 [2023-08-21 11:31:56,297] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M12_read_Peak_Union.out1 [2023-08-21 11:31:56,298] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_read_Peak_Union.out1 [2023-08-21 11:31:56,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_read_Peak_Union.out1 [2023-08-21 11:31:56,298] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12_read_Peak_Union.out1 [2023-08-21 11:31:56,298] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12_read_Peak_Union.out1 [2023-08-21 11:31:56,298] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12_read_Peak_Union.out1 [2023-08-21 11:31:56,298] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12_read_Peak_Union.out1 [2023-08-21 11:31:56,298] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12_read_Peak_Union.out1 [2023-08-21 11:31:56,308] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M12_read_Peak_Union.out1 [2023-08-21 11:31:56,818] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_read_Peak_Union.out1 [2023-08-21 11:31:56,846] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_StrgtPks_tab.bed [2023-08-21 11:31:56,846] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_StrgtPksRm_tab.bed [2023-08-21 11:31:56,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_filtered_StrgtPks.bam [2023-08-21 11:31:56,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_StrgtPks_tab.bed [2023-08-21 11:31:56,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_filtered_StrgtPks_sorted.bam [2023-08-21 11:31:56,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_filtered_StrgtPks.bam.bai [2023-08-21 11:31:56,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_filtered_StrgtPks_sorted.bam.bai [2023-08-21 11:31:56,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_filtered_StrgtPks_sorted.bam.bai [2023-08-21 11:31:56,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_filtered_StrgtPks.bam.bai [2023-08-21 11:31:56,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_StrgtPksRm_tab.bed [2023-08-21 11:31:56,854] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:56,856] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:56,856] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:56,860] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:56,860] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:56,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:56,860] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:56,860] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:56,860] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:56,861] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:56,861] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:56,869] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:57,295] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:57,327] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_narrow_MACS2_peaks.narrowPeak.bed [2023-08-21 11:31:57,336] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:57,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:57,339] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:57,345] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:57,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:57,345] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:57,345] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:57,345] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:57,345] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:57,346] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:57,587] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:57,619] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:57,621] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:57,622] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:57,627] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:57,627] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:57,634] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:57,641] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:57,643] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:57,643] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:57,648] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:57,648] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:57,648] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:57,648] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:57,648] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:57,648] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:57,648] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:57,648] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:57,655] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:58,031] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:58,053] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_narrow_MACS2_summits.bed [2023-08-21 11:31:58,054] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_broad_MACS2_peaks.broadPeak.bed [2023-08-21 11:31:58,101] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_read_MACS2_peaks.out1 [2023-08-21 11:31:58,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_read_MACS2_peaks.out1 [2023-08-21 11:31:58,104] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_read_MACS2_peaks.out1 [2023-08-21 11:31:58,109] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_read_MACS2_peaks.out1 [2023-08-21 11:31:58,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_read_MACS2_peaks.out1 [2023-08-21 11:31:58,110] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12_read_MACS2_peaks.out1 [2023-08-21 11:31:58,110] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12_read_MACS2_peaks.out1 [2023-08-21 11:31:58,110] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12_read_MACS2_peaks.out1 [2023-08-21 11:31:58,110] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12_read_MACS2_peaks.out1 [2023-08-21 11:31:58,110] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12_read_MACS2_peaks.out1 [2023-08-21 11:31:58,346] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_read_MACS2_peaks.out1 [2023-08-21 11:31:58,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:58,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:58,366] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:58,370] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:58,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:58,377] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:58,379] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-21 11:31:58,379] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-21 11:31:58,379] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-21 11:31:58,384] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:31:58,387] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:31:58,403] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-21 11:31:58,409] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-21 11:31:58,411] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-21 11:31:58,416] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_metrics [2023-08-21 11:31:58,418] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_metrics [2023-08-21 11:31:58,418] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_metrics [2023-08-21 11:31:58,423] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_metrics [2023-08-21 11:31:58,439] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_metrics [2023-08-21 11:31:58,446] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_TRIM_metrics [2023-08-21 11:31:58,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_TRIM_metrics [2023-08-21 11:31:58,449] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_TRIM_metrics [2023-08-21 11:31:58,454] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_TRIM_metrics [2023-08-21 11:31:58,469] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_TRIM_metrics [2023-08-21 11:31:58,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_hist.pdf [2023-08-21 11:31:58,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_hist.pdf [2023-08-21 11:31:58,471] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_narrow_MACS2_summits.bed [2023-08-21 11:31:58,494] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:58,498] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:58,498] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:58,504] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:58,504] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:58,517] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:31:58,519] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_broad_MACS2_peaks.broadPeak.bed [2023-08-21 11:31:58,573] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:58,577] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:58,577] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:58,583] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:58,583] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:58,584] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:58,584] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:58,584] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:58,584] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:58,584] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:58,584] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:58,593] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:59,031] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:31:59,057] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak.bed [2023-08-21 11:31:59,081] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:59,084] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:59,085] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:59,090] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:59,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:59,103] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:31:59,131] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:59,136] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:59,136] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:59,143] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:59,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:59,143] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:59,143] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:59,144] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:59,144] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:59,144] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:59,394] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:31:59,438] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:59,442] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:59,443] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:59,449] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:59,449] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:59,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:59,449] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:59,449] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:59,449] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:59,449] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:59,449] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:59,458] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:59,846] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:31:59,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:59,881] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:59,882] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:59,886] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:59,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:59,886] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:59,886] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:59,887] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:59,887] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:31:59,887] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:00,127] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:00,141] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-21 11:32:00,145] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:00,147] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:00,159] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-21 11:32:00,159] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-21 11:32:00,159] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-21 11:32:00,159] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-21 11:32:00,159] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_TRIM_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-21 11:32:00,165] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland [2023-08-21 11:32:00,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland [2023-08-21 11:32:00,167] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland [2023-08-21 11:32:00,171] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland [2023-08-21 11:32:00,171] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland [2023-08-21 11:32:00,171] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland [2023-08-21 11:32:00,171] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland [2023-08-21 11:32:00,172] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland [2023-08-21 11:32:00,172] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland [2023-08-21 11:32:00,172] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland [2023-08-21 11:32:00,639] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland [2023-08-21 11:32:00,668] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_read_SICER.out1 [2023-08-21 11:32:00,671] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_read_SICER.out1 [2023-08-21 11:32:00,671] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_read_SICER.out1 [2023-08-21 11:32:00,676] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M12_read_SICER.out1 [2023-08-21 11:32:00,676] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12_read_SICER.out1 [2023-08-21 11:32:00,676] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_read_SICER.out1 [2023-08-21 11:32:00,676] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12_read_SICER.out1 [2023-08-21 11:32:00,676] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12_read_SICER.out1 [2023-08-21 11:32:00,676] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12_read_SICER.out1 [2023-08-21 11:32:00,676] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12_read_SICER.out1 [2023-08-21 11:32:00,676] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12_read_SICER.out1 [2023-08-21 11:32:00,685] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M12_read_SICER.out1 [2023-08-21 11:32:01,174] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_read_SICER.out1 [2023-08-21 11:32:01,233] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:01,235] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:01,235] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:01,241] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:01,241] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:01,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:01,241] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:01,241] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:01,241] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:01,241] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:01,241] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:01,241] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:01,242] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:12,036] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:12,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12-W400-G2400-E100-islandfiltered.bed [2023-08-21 11:32:12,714] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-08-21 11:32:12,728] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:12,731] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:12,732] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:12,737] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:12,737] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:12,743] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:12,752] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12-1-removed.bed [2023-08-21 11:32:12,759] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-21 11:32:12,759] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12-W400-G2400-E100.scoreisland_common.bed [2023-08-21 11:32:12,766] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:12,769] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:12,782] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-08-21 11:32:12,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-08-21 11:32:12,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-21 11:32:12,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12-W400-G2400-E100.scoreisland_unique.bed [2023-08-21 11:32:12,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1_val_1.fq.gz [2023-08-21 11:32:12,790] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:32:12,792] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:32:12,792] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:32:12,797] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:32:12,814] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:32:12,835] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:32:12,839] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:32:12,839] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:32:12,845] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:32:12,857] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:32:12,858] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R2_val_2.fq.gz [2023-08-21 11:32:12,858] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz [2023-08-21 11:32:12,866] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz [2023-08-21 11:32:12,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_alignments.bam [2023-08-21 11:32:12,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_alignments.bam.bai [2023-08-21 11:32:12,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_sorted_mapped.bam [2023-08-21 11:32:12,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_sorted_mapped.bam.bai [2023-08-21 11:32:12,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_alignments.bam.bai [2023-08-21 11:32:12,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_sorted_mapped.bam.bai [2023-08-21 11:32:12,925] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_read_Peak_Union.out1 [2023-08-21 11:32:12,927] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_read_Peak_Union.out1 [2023-08-21 11:32:12,928] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_read_Peak_Union.out1 [2023-08-21 11:32:12,932] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M13_read_Peak_Union.out1 [2023-08-21 11:32:12,932] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13_read_Peak_Union.out1 [2023-08-21 11:32:12,932] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_read_Peak_Union.out1 [2023-08-21 11:32:12,932] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M13_read_Peak_Union.out1 [2023-08-21 11:32:12,932] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M13_read_Peak_Union.out1 [2023-08-21 11:32:12,932] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M13_read_Peak_Union.out1 [2023-08-21 11:32:12,932] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M13_read_Peak_Union.out1 [2023-08-21 11:32:12,932] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M13_read_Peak_Union.out1 [2023-08-21 11:32:12,942] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M13_read_Peak_Union.out1 [2023-08-21 11:32:13,443] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_read_Peak_Union.out1 [2023-08-21 11:32:13,501] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13-W400-G2400-E100-islandfiltered.bed [2023-08-21 11:32:13,511] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland [2023-08-21 11:32:13,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland [2023-08-21 11:32:13,515] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland [2023-08-21 11:32:13,519] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland [2023-08-21 11:32:13,519] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland [2023-08-21 11:32:13,520] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland [2023-08-21 11:32:13,520] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland [2023-08-21 11:32:13,520] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland [2023-08-21 11:32:13,520] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland [2023-08-21 11:32:13,520] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland [2023-08-21 11:32:13,956] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland [2023-08-21 11:32:13,981] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-08-21 11:32:13,984] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13-1-removed.bed [2023-08-21 11:32:13,992] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:13,994] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:13,995] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:13,999] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:13,999] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:13,999] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:13,999] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:13,999] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:13,999] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:13,999] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:13,999] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:13,999] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:13,999] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:24,506] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:25,152] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_read_SICER.out1 [2023-08-21 11:32:25,154] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_read_SICER.out1 [2023-08-21 11:32:25,155] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_read_SICER.out1 [2023-08-21 11:32:25,159] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M13_read_SICER.out1 [2023-08-21 11:32:25,159] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13_read_SICER.out1 [2023-08-21 11:32:25,159] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_read_SICER.out1 [2023-08-21 11:32:25,159] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M13_read_SICER.out1 [2023-08-21 11:32:25,159] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M13_read_SICER.out1 [2023-08-21 11:32:25,159] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M13_read_SICER.out1 [2023-08-21 11:32:25,159] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M13_read_SICER.out1 [2023-08-21 11:32:25,159] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M13_read_SICER.out1 [2023-08-21 11:32:25,168] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M13_read_SICER.out1 [2023-08-21 11:32:25,623] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_read_SICER.out1 [2023-08-21 11:32:25,660] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:25,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:25,662] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:25,667] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:25,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:25,678] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:25,688] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13-W400-G2400-E100.scoreisland_common.bed [2023-08-21 11:32:25,690] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-21 11:32:25,691] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-08-21 11:32:25,698] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:25,701] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:25,714] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13-W400-G2400-E100.scoreisland_unique.bed [2023-08-21 11:32:25,715] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-21 11:32:25,715] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-08-21 11:32:25,715] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_StrgtPks_tab.bed [2023-08-21 11:32:25,716] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_StrgtPks_tab.bed [2023-08-21 11:32:25,718] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_filtered_StrgtPks_sorted.bam.bai [2023-08-21 11:32:25,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_filtered_StrgtPks_sorted.bam [2023-08-21 11:32:25,724] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_filtered_StrgtPks.bam.bai [2023-08-21 11:32:25,724] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_filtered_StrgtPks_sorted.bam.bai [2023-08-21 11:32:25,724] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_StrgtPksRm_tab.bed [2023-08-21 11:32:25,728] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_StrgtPksRm_tab.bed [2023-08-21 11:32:25,729] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_filtered_StrgtPks.bam [2023-08-21 11:32:25,729] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_filtered_StrgtPks.bam.bai [2023-08-21 11:32:25,764] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:25,769] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:25,769] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:25,775] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:25,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:25,782] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:25,786] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_broad_MACS2_peaks.broadPeak.bed [2023-08-21 11:32:25,822] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:25,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:25,826] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:25,832] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:25,832] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:25,833] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:25,833] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:25,833] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:25,833] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:25,833] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:25,833] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:25,840] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:26,146] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:26,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_narrow_MACS2_summits.bed [2023-08-21 11:32:26,200] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:26,208] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:26,209] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:26,214] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:26,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:26,223] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:26,271] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:26,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:26,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:26,281] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:26,281] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:26,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:26,282] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:26,282] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:26,282] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:26,282] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:26,282] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:26,290] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:26,630] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:26,654] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:26,656] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:26,657] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:26,660] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:26,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:26,797] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:26,804] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak.bed [2023-08-21 11:32:26,823] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:26,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:26,826] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:26,831] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:26,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:26,967] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:26,976] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-21 11:32:26,989] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-21 11:32:26,999] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-21 11:32:27,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-21 11:32:27,001] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-21 11:32:27,014] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:27,017] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:27,033] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-21 11:32:27,037] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_TRIM_hist.pdf [2023-08-21 11:32:27,037] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_hist.pdf [2023-08-21 11:32:27,047] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_TRIM_metrics [2023-08-21 11:32:27,050] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_TRIM_metrics [2023-08-21 11:32:27,051] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_TRIM_metrics [2023-08-21 11:32:27,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_TRIM_metrics [2023-08-21 11:32:27,080] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_TRIM_metrics [2023-08-21 11:32:27,105] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_metrics [2023-08-21 11:32:27,108] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_metrics [2023-08-21 11:32:27,108] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_metrics [2023-08-21 11:32:27,114] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_metrics [2023-08-21 11:32:27,130] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_metrics [2023-08-21 11:32:27,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_narrow_MACS2_peaks.narrowPeak.bed [2023-08-21 11:32:27,168] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_read_MACS2_peaks.out1 [2023-08-21 11:32:27,172] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_read_MACS2_peaks.out1 [2023-08-21 11:32:27,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_read_MACS2_peaks.out1 [2023-08-21 11:32:27,177] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13_read_MACS2_peaks.out1 [2023-08-21 11:32:27,177] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_read_MACS2_peaks.out1 [2023-08-21 11:32:27,319] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_read_MACS2_peaks.out1 [2023-08-21 11:32:27,327] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_narrow_MACS2_summits.bed [2023-08-21 11:32:27,361] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:27,363] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:27,364] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:27,368] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:27,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:27,374] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:27,380] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:27,382] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:27,383] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:27,387] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:27,387] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:27,522] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:27,534] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_broad_MACS2_peaks.broadPeak.bed [2023-08-21 11:32:27,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:27,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:27,542] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:27,546] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:27,546] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:27,546] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:27,546] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:27,546] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:27,546] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:27,546] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:27,546] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:27,552] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:27,885] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:27,909] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:27,912] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:27,912] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:27,916] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:27,916] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:27,922] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:27,928] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:27,931] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:27,931] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:27,935] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:27,935] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:27,935] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:27,935] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:27,935] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:27,935] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:27,935] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:27,935] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:27,941] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:28,243] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:28,261] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-21 11:32:28,261] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-21 11:32:28,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:28,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:28,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-21 11:32:28,309] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-21 11:32:28,311] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-21 11:32:28,312] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-21 11:32:28,313] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R2_val_2.fq.gz [2023-08-21 11:32:28,329] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:32:28,332] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:32:28,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:32:28,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:32:28,351] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:32:28,353] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1_val_1.fq.gz [2023-08-21 11:32:28,359] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:32:28,361] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:32:28,361] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:32:28,366] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:32:28,381] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:32:28,410] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz [2023-08-21 11:32:28,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz [2023-08-21 11:32:28,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_alignments.bam.bai [2023-08-21 11:32:28,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_alignments.bam [2023-08-21 11:32:28,422] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_alignments.bam.bai [2023-08-21 11:32:28,453] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_sorted_mapped.bam [2023-08-21 11:32:28,454] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_sorted_mapped.bam.bai [2023-08-21 11:32:28,469] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_sorted_mapped.bam.bai [2023-08-21 11:32:28,500] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:28,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:28,504] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:28,510] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:28,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:28,510] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:28,510] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:28,510] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:28,510] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:28,511] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:28,519] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:28,521] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-08-21 11:32:28,556] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM-W400-G2400-E100-islandfiltered.bed [2023-08-21 11:32:28,562] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:32:28,565] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:32:28,565] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:32:28,571] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:32:28,571] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:32:28,571] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:32:28,571] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:32:28,571] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:32:28,571] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:32:28,571] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:32:29,073] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100.scoreisland [2023-08-21 11:32:29,106] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_TRIM_read_SICER.out1 [2023-08-21 11:32:29,109] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_TRIM_read_SICER.out1 [2023-08-21 11:32:29,109] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_TRIM_read_SICER.out1 [2023-08-21 11:32:29,114] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M14_TRIM_read_SICER.out1 [2023-08-21 11:32:29,114] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_TRIM_read_SICER.out1 [2023-08-21 11:32:29,114] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_TRIM_read_SICER.out1 [2023-08-21 11:32:29,114] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14_TRIM_read_SICER.out1 [2023-08-21 11:32:29,114] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14_TRIM_read_SICER.out1 [2023-08-21 11:32:29,114] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14_TRIM_read_SICER.out1 [2023-08-21 11:32:29,114] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14_TRIM_read_SICER.out1 [2023-08-21 11:32:29,114] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14_TRIM_read_SICER.out1 [2023-08-21 11:32:29,124] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M14_TRIM_read_SICER.out1 [2023-08-21 11:32:29,651] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_TRIM_read_SICER.out1 [2023-08-21 11:32:29,680] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM-1-removed.bed [2023-08-21 11:32:29,726] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:29,730] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:29,731] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:29,736] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:29,736] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:29,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:29,736] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:29,737] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:29,737] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:29,737] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:29,737] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:29,737] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:29,737] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:40,334] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_TRIM-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:40,995] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-08-21 11:32:40,996] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-21 11:32:41,000] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:41,003] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:41,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM-W400-G2400-E100.scoreisland_unique.bed [2023-08-21 11:32:41,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-08-21 11:32:41,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM-W400-G2400-E100.scoreisland_common.bed [2023-08-21 11:32:41,017] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-21 11:32:41,030] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_read_Peak_Union.out1 [2023-08-21 11:32:41,032] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_read_Peak_Union.out1 [2023-08-21 11:32:41,032] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_read_Peak_Union.out1 [2023-08-21 11:32:41,036] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M14_read_Peak_Union.out1 [2023-08-21 11:32:41,036] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_read_Peak_Union.out1 [2023-08-21 11:32:41,037] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_read_Peak_Union.out1 [2023-08-21 11:32:41,037] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14_read_Peak_Union.out1 [2023-08-21 11:32:41,037] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14_read_Peak_Union.out1 [2023-08-21 11:32:41,037] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14_read_Peak_Union.out1 [2023-08-21 11:32:41,037] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14_read_Peak_Union.out1 [2023-08-21 11:32:41,037] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14_read_Peak_Union.out1 [2023-08-21 11:32:41,047] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M14_read_Peak_Union.out1 [2023-08-21 11:32:41,558] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_read_Peak_Union.out1 [2023-08-21 11:32:41,650] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:41,654] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:41,654] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:41,661] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:41,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:41,661] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:41,661] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:41,661] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:41,661] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:41,661] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:41,849] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:41,885] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:41,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:41,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:41,892] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:41,892] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:41,892] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:41,892] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:41,892] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:41,892] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:41,892] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:42,077] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_TRIM_read_MACS2_peaks.out1 [2023-08-21 11:32:42,120] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:42,124] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:42,124] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:42,129] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:42,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:42,142] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:42,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:42,185] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:42,185] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:42,194] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:42,194] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:42,194] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:42,194] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:42,194] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:42,195] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:42,195] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:42,195] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:42,205] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:42,519] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:42,545] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak.bed [2023-08-21 11:32:42,551] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_broad_MACS2_peaks.broadPeak.bed [2023-08-21 11:32:42,554] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_narrow_MACS2_summits.bed [2023-08-21 11:32:42,581] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:42,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:42,591] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:42,598] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:42,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:42,605] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:42,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:42,644] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:42,645] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:42,652] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:42,652] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:42,652] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:42,652] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:42,653] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:42,653] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:42,653] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:42,653] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:42,661] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:43,014] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_TRIM_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:43,039] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-21 11:32:43,045] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-21 11:32:43,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-21 11:32:43,069] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:43,073] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:43,088] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-21 11:32:43,088] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-21 11:32:43,089] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-21 11:32:43,093] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_StrgtPksRm_tab.bed [2023-08-21 11:32:43,094] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_filtered_StrgtPks.bam.bai [2023-08-21 11:32:43,106] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_filtered_StrgtPks.bam.bai [2023-08-21 11:32:43,107] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_filtered_StrgtPks_sorted.bam.bai [2023-08-21 11:32:43,107] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_StrgtPks_tab.bed [2023-08-21 11:32:43,108] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_filtered_StrgtPks_sorted.bam.bai [2023-08-21 11:32:43,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_filtered_StrgtPks_sorted.bam [2023-08-21 11:32:43,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_StrgtPks_tab.bed [2023-08-21 11:32:43,140] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_filtered_StrgtPks.bam [2023-08-21 11:32:43,145] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_StrgtPksRm_tab.bed [2023-08-21 11:32:43,152] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_narrow_MACS2_peaks.narrowPeak.bed [2023-08-21 11:32:43,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:43,185] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:43,186] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:43,190] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:43,190] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:43,191] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:43,191] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:43,191] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:43,191] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:43,191] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:43,191] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:43,198] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:43,519] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak [2023-08-21 11:32:43,541] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:43,543] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:43,544] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:43,547] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:43,547] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:43,554] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.broadPeak.bb [2023-08-21 11:32:43,560] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:43,563] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:43,563] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:43,567] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:43,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:43,568] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:43,568] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:43,568] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:43,568] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:43,568] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:43,752] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak [2023-08-21 11:32:43,769] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_read_MACS2_peaks.out1 [2023-08-21 11:32:43,772] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_read_MACS2_peaks.out1 [2023-08-21 11:32:43,772] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_read_MACS2_peaks.out1 [2023-08-21 11:32:43,776] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_read_MACS2_peaks.out1 [2023-08-21 11:32:43,776] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_read_MACS2_peaks.out1 [2023-08-21 11:32:43,776] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14_read_MACS2_peaks.out1 [2023-08-21 11:32:43,776] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14_read_MACS2_peaks.out1 [2023-08-21 11:32:43,776] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14_read_MACS2_peaks.out1 [2023-08-21 11:32:43,776] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14_read_MACS2_peaks.out1 [2023-08-21 11:32:43,776] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14_read_MACS2_peaks.out1 [2023-08-21 11:32:43,945] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_read_MACS2_peaks.out1 [2023-08-21 11:32:43,961] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_narrow_MACS2_summits.bed [2023-08-21 11:32:43,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_broad_MACS2_peaks.broadPeak.bed [2023-08-21 11:32:43,966] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:43,968] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:43,969] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:43,972] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:43,973] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:43,980] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_narrow_MACS2_peaks.narrowPeak.bb [2023-08-21 11:32:43,994] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:43,996] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:43,996] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:44,001] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:44,001] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:44,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:44,001] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:44,001] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:44,001] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:44,001] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:44,001] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:44,008] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:44,351] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_broad_MACS2_peaks.gappedPeak [2023-08-21 11:32:44,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-21 11:32:44,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-21 11:32:44,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-21 11:32:44,406] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:44,408] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:44,428] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-21 11:32:44,431] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-21 11:32:44,489] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-21 11:32:44,514] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland [2023-08-21 11:32:44,518] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland [2023-08-21 11:32:44,524] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland [2023-08-21 11:32:44,529] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland [2023-08-21 11:32:44,529] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland [2023-08-21 11:32:44,529] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland [2023-08-21 11:32:44,529] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland [2023-08-21 11:32:44,529] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland [2023-08-21 11:32:44,530] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland [2023-08-21 11:32:44,530] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland [2023-08-21 11:32:45,031] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland [2023-08-21 11:32:45,059] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14-W400-G2400-E100-islandfiltered.bed [2023-08-21 11:32:45,064] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:45,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:45,067] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:45,071] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:45,071] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:45,071] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:45,071] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:45,071] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:45,071] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:45,071] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:45,071] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:45,071] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:45,071] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:55,693] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-21 11:32:56,358] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-08-21 11:32:56,367] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:56,370] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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G208M14-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:56,375] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:56,375] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:56,380] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14-W400-G2400-E100.scoreisland.bb [2023-08-21 11:32:56,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14-1-removed.bed [2023-08-21 11:32:56,390] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_read_SICER.out1 [2023-08-21 11:32:56,392] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_read_SICER.out1 [2023-08-21 11:32:56,392] multiqc [DEBUG ] File ignored by 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[2023-08-21 11:32:56,396] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G208M14_read_SICER.out1 [2023-08-21 11:32:56,396] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G208M14_read_SICER.out1 [2023-08-21 11:32:56,406] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G208M14_read_SICER.out1 [2023-08-21 11:32:56,926] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_read_SICER.out1 [2023-08-21 11:32:56,964] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-21 11:32:56,971] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:56,974] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-21 11:32:56,988] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-08-21 11:32:56,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-21 11:32:56,991] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14-W400-G2400-E100.scoreisland_unique.bed [2023-08-21 11:32:56,993] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14-W400-G2400-E100.scoreisland_common.bed [2023-08-21 11:32:56,994] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-08-21 11:32:56,996] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_hist.pdf [2023-08-21 11:32:57,005] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_TRIM_metrics [2023-08-21 11:32:57,008] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_TRIM_metrics [2023-08-21 11:32:57,009] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G208M14_TRIM_metrics [2023-08-21 11:32:57,013] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G208M14_TRIM_metrics [2023-08-21 11:32:57,028] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_TRIM_metrics [2023-08-21 11:32:57,037] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_TRIM_hist.pdf [2023-08-21 11:32:57,057] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_metrics [2023-08-21 11:32:57,061] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_metrics [2023-08-21 11:32:57,061] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern 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pattern filesize limit: G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:32:57,115] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1.fastq.gz_trimming_report.txt [2023-08-21 11:32:57,116] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R2_val_2.fq.gz [2023-08-21 11:32:57,116] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1_val_1.fq.gz [2023-08-21 11:32:57,121] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:32:57,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R2.fastq.gz_trimming_report.txt [2023-08-21 11:32:57,123] multiqc [DEBUG ] File ignored by 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ignored by ccs/v4 because it exceeded search pattern filesize limit: README_FASTQC.sh [2023-08-21 11:32:57,221] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_FASTQC.sh [2023-08-21 11:32:57,228] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_FASTQC.sh [2023-08-21 11:32:57,273] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G208_SG_CUTRUN_K27ac_G208M13_TRIM.o76957 [2023-08-21 11:32:57,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G208_SG_CUTRUN_K27ac_G208M13_TRIM.o76957 [2023-08-21 11:32:57,277] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G208_SG_CUTRUN_K27ac_G208M13_TRIM.o76957 [2023-08-21 11:32:57,284] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern 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it exceeded search pattern filesize limit: Step_02_G208_SG_CUTRUN_K27ac_G208M11_TRIM.o76955 [2023-08-21 11:32:57,381] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G208_SG_CUTRUN_K27ac_G208M14_TRIM.o76958 [2023-08-21 11:32:57,384] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G208_SG_CUTRUN_K27ac_G208M14_TRIM.o76958 [2023-08-21 11:32:57,385] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G208_SG_CUTRUN_K27ac_G208M14_TRIM.o76958 [2023-08-21 11:32:57,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G208_SG_CUTRUN_K27ac_G208M14_TRIM.o76958 [2023-08-21 11:32:57,403] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G208_SG_CUTRUN_K27ac_G208M14_TRIM.o76958 [2023-08-21 11:32:57,446] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-21 11:32:57,449] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-21 11:32:57,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-21 11:32:57,470] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-21 11:32:57,473] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-21 11:32:57,473] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-21 11:32:57,483] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-21 11:32:57,492] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-21 11:32:57,513] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G208_SG_CUTRUN_K27ac_G208M12_TRIM.o76956 [2023-08-21 11:32:57,516] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G208_SG_CUTRUN_K27ac_G208M12_TRIM.o76956 [2023-08-21 11:32:57,517] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G208_SG_CUTRUN_K27ac_G208M12_TRIM.o76956 [2023-08-21 11:32:57,523] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G208_SG_CUTRUN_K27ac_G208M12_TRIM.o76956 [2023-08-21 11:32:57,534] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G208_SG_CUTRUN_K27ac_G208M12_TRIM.o76956 [2023-08-21 11:32:57,551] multiqc [DEBUG ] File ignored by 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CollectInsertSizeMetrics.qsub [2023-08-21 11:32:59,190] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-08-21 11:32:59,202] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-08-21 11:32:59,211] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-08-21 11:32:59,228] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-08-21 11:32:59,238] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-21 11:32:59,241] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-21 11:32:59,241] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-21 11:32:59,246] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-21 11:32:59,255] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-21 11:32:59,280] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G208_SG_CUTRUN_K27ac_G208M13_TRIM.o77208 [2023-08-21 11:32:59,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G208_SG_CUTRUN_K27ac_G208M13_TRIM.o77208 [2023-08-21 11:32:59,289] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G208_SG_CUTRUN_K27ac_G208M13_TRIM.o77208 [2023-08-21 11:32:59,294] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G208_SG_CUTRUN_K27ac_G208M13_TRIM.o77208 [2023-08-21 11:32:59,305] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G208_SG_CUTRUN_K27ac_G208M13_TRIM.o77208 [2023-08-21 11:32:59,323] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G208_SG_CUTRUN_K27ac_G208M12_TRIM.o77207 [2023-08-21 11:32:59,328] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G208_SG_CUTRUN_K27ac_G208M12_TRIM.o77207 [2023-08-21 11:32:59,328] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G208_SG_CUTRUN_K27ac_G208M12_TRIM.o77207 [2023-08-21 11:32:59,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G208_SG_CUTRUN_K27ac_G208M12_TRIM.o77207 [2023-08-21 11:32:59,345] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G208_SG_CUTRUN_K27ac_G208M12_TRIM.o77207 [2023-08-21 11:32:59,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2023-08-21 11:32:59,674] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.1.2 [2023-08-21 11:33:00,146] multiqc.modules.macs2.macs2 [INFO ] Found 16 logs [2023-08-21 11:33:00,154] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.1.2 [2023-08-21 11:33:00,234] multiqc.modules.picard.picard [INFO ] Found 8 InsertSizeMetrics reports [2023-08-21 11:33:00,269] multiqc.modules.samtools.samtools [INFO ] Found 4 flagstat reports [2023-08-21 11:33:00,277] multiqc.modules.samtools.samtools [INFO ] Found 4 idxstats reports [2023-08-21 11:33:00,285] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1' [2023-08-21 11:33:00,287] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1' [2023-08-21 11:33:00,289] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1' [2023-08-21 11:33:00,291] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1' [2023-08-21 11:33:00,291] multiqc.modules.bowtie2.bowtie2 [INFO ] Found 5 reports [2023-08-21 11:33:00,392] multiqc.modules.cutadapt.cutadapt [INFO ] Found 8 reports [2023-08-21 11:33:01,911] multiqc.modules.fastqc.fastqc [INFO ] Found 8 reports [2023-08-21 11:33:02,192] multiqc [INFO ] Compressing plot data [2023-08-21 11:33:02,665] multiqc [INFO ] Report : G208_SG_CUTRUN_K27ac_TRIMMED_multiqc/multiqc_report.html [2023-08-21 11:33:02,665] multiqc [INFO ] Data : G208_SG_CUTRUN_K27ac_TRIMMED_multiqc/multiqc_data [2023-08-21 11:33:02,666] multiqc [DEBUG ] Moving data file from '/scratch/tmpt0bnqgza/multiqc_data' to 'G208_SG_CUTRUN_K27ac_TRIMMED_multiqc/multiqc_data' [2023-08-21 11:33:02,799] multiqc [INFO ] MultiQC complete