Module	Section	Sample Name	Source
MACS2	all_sections	G208M13_broad_MACS2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13/fastq/bowtie2/G208M13_MACS2_output/G208M13_broad_MACS2_peaks.xls
MACS2	all_sections	G208M13_narrow_MACS2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13/fastq/bowtie2/G208M13_MACS2_output/G208M13_narrow_MACS2_peaks.xls
MACS2	all_sections	G208M12_broad_MACS2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12/fastq/bowtie2/G208M12_MACS2_output/G208M12_broad_MACS2_peaks.xls
MACS2	all_sections	G208M12_narrow_MACS2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12/fastq/bowtie2/G208M12_MACS2_output/G208M12_narrow_MACS2_peaks.xls
MACS2	all_sections	G208M11_broad_MACS2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11/fastq/bowtie2/G208M11_MACS2_output/G208M11_broad_MACS2_peaks.xls
MACS2	all_sections	G208M11_narrow_MACS2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11/fastq/bowtie2/G208M11_MACS2_output/G208M11_narrow_MACS2_peaks.xls
MACS2	all_sections	G208M10_broad_MACS2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M10/fastq/bowtie2/G208M10_MACS2_output/G208M10_broad_MACS2_peaks.xls
MACS2	all_sections	G208M10_narrow_MACS2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M10/fastq/bowtie2/G208M10_MACS2_output/G208M10_narrow_MACS2_peaks.xls
MACS2	all_sections	G208M09_broad_MACS2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M09/fastq/bowtie2/G208M09_MACS2_output/G208M09_broad_MACS2_peaks.xls
MACS2	all_sections	G208M09_narrow_MACS2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M09/fastq/bowtie2/G208M09_MACS2_output/G208M09_narrow_MACS2_peaks.xls
MACS2	all_sections	G208M14_narrow_MACS2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14/fastq/bowtie2/G208M14_MACS2_output/G208M14_narrow_MACS2_peaks.xls
MACS2	all_sections	G208M14_broad_MACS2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14/fastq/bowtie2/G208M14_MACS2_output/G208M14_broad_MACS2_peaks.xls
Picard	InsertSizeMetrics	G208M13_sorted_mapped	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13/fastq/bowtie2/CollectInsertSizeMetrics/G208M13_metrics
Picard	InsertSizeMetrics	G208M12_sorted_mapped	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12/fastq/bowtie2/CollectInsertSizeMetrics/G208M12_metrics
Picard	InsertSizeMetrics	G208M11_sorted_mapped	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11/fastq/bowtie2/CollectInsertSizeMetrics/G208M11_metrics
Picard	InsertSizeMetrics	G208M10_sorted_mapped	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M10/fastq/bowtie2/CollectInsertSizeMetrics/G208M10_metrics
Picard	InsertSizeMetrics	G208M09_sorted_mapped	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M09/fastq/bowtie2/CollectInsertSizeMetrics/G208M09_metrics
Picard	InsertSizeMetrics	G208M14_sorted_mapped	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14/fastq/bowtie2/CollectInsertSizeMetrics/G208M14_metrics
Samtools	flagstat	flagstat_G208M13	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M13/fastq/bowtie2/flagstat_G208M13.txt
Samtools	flagstat	flagstat_G208M12	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M12/fastq/bowtie2/flagstat_G208M12.txt
Samtools	flagstat	flagstat_G208M11	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M11/fastq/bowtie2/flagstat_G208M11.txt
Samtools	flagstat	flagstat_G208M10	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M10/fastq/bowtie2/flagstat_G208M10.txt
Samtools	flagstat	flagstat_G208M09	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M09/fastq/bowtie2/flagstat_G208M09.txt
Samtools	flagstat	flagstat_G208M14	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/G208M14/fastq/bowtie2/flagstat_G208M14.txt
Samtools	idxstats	G208M13_idxstats	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G208M13_idxstats.out
Samtools	idxstats	G208M12_idxstats	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G208M12_idxstats.out
Samtools	idxstats	G208M11_idxstats	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G208M11_idxstats.out
Samtools	idxstats	G208M10_idxstats	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G208M10_idxstats.out
Samtools	idxstats	G208M09_idxstats	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G208M09_idxstats.out
Samtools	idxstats	G208M14_idxstats	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G208M14_idxstats.out
Bowtie 2 / HiSAT2	all_sections	G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/04_Bowtie2/Step_04_G208_SG_CUTRUN_K27ac_G208M13.o46367
Bowtie 2 / HiSAT2	all_sections	G208M9_CKDL230025721-1A_HGLT2DSX7_L1_R1	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/04_Bowtie2/Step_04_G208_SG_CUTRUN_K27ac_G208M09.o46363
Bowtie 2 / HiSAT2	all_sections	G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/04_Bowtie2/Step_04_G208_SG_CUTRUN_K27ac_G208M11.o46365
Bowtie 2 / HiSAT2	all_sections	G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/04_Bowtie2/Step_04_G208_SG_CUTRUN_K27ac_G208M12.o46366
Bowtie 2 / HiSAT2	all_sections	G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/04_Bowtie2/Step_04_G208_SG_CUTRUN_K27ac_G208M14.o46368
Bowtie 2 / HiSAT2	all_sections	README_Bowtie2.sh	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/04_Bowtie2/README_Bowtie2.sh
Bowtie 2 / HiSAT2	all_sections	G208M10_CKDL230025721-1A_HGLT2DSX7_L1_R1	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/04_Bowtie2/Step_04_G208_SG_CUTRUN_K27ac_G208M10.o46364
FastQC	all_sections	G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M13_FASTQC/G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R2_fastqc.zip
FastQC	all_sections	G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M13_FASTQC/G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1_fastqc.zip
FastQC	all_sections	G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M12_FASTQC/G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R2_fastqc.zip
FastQC	all_sections	G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M12_FASTQC/G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1_fastqc.zip
FastQC	all_sections	G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M11_FASTQC/G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R2_fastqc.zip
FastQC	all_sections	G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M11_FASTQC/G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1_fastqc.zip
FastQC	all_sections	G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M14_FASTQC/G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R2_fastqc.zip
FastQC	all_sections	G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M14_FASTQC/G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1_fastqc.zip
FastQC	all_sections	G208M9_CKDL230025721-1A_HGLT2DSX7_L1_R1	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M09_FASTQC/G208M9_CKDL230025721-1A_HGLT2DSX7_L1_R1_fastqc.zip
FastQC	all_sections	G208M9_CKDL230025721-1A_HGLT2DSX7_L1_R2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M09_FASTQC/G208M9_CKDL230025721-1A_HGLT2DSX7_L1_R2_fastqc.zip
FastQC	all_sections	G208M10_CKDL230025721-1A_HGLT2DSX7_L1_R1	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M10_FASTQC/G208M10_CKDL230025721-1A_HGLT2DSX7_L1_R1_fastqc.zip
FastQC	all_sections	G208M10_CKDL230025721-1A_HGLT2DSX7_L1_R2	/projectnb2/wax-dk/max/G208_SG_CUTRUN_K27ac/Scripts/02_FASTQC/Job_Summary/G208M10_FASTQC/G208M10_CKDL230025721-1A_HGLT2DSX7_L1_R2_fastqc.zip