Sample	total_reads	paired_total	paired_aligned_none	paired_aligned_one	paired_aligned_multi	paired_aligned_discord_one	paired_aligned_mate_none	paired_aligned_mate_one	paired_aligned_mate_multi	overall_alignment_rate	paired_aligned_mate_multi_halved	paired_aligned_mate_none_halved	paired_aligned_mate_one_halved
G208M10_CKDL230025721-1A_HGLT2DSX7_L1_R1	3449430	3449430	1289673	1611300	548457	502855	1210643	142300	220693	82.45	110346.5	605321.5	71150.0
G208M11_CKDL230025721-1A_HGLT2DSX7_L1_R1	5832417	5832417	2769795	2801205	261417	1376401	2243757	277848	265183	80.76	132591.5	1121878.5	138924.0
G208M12_CKDL230025721-1A_HGLT2DSX7_L1_R1	5531673	5531673	2459036	2853242	219395	1327299	1800553	245861	217060	83.73	108530.0	900276.5	122930.5
G208M13_CKDL230025721-1A_HGLT2DSX7_L1_R1	6113513	6113513	2756625	2992013	364875	1395011	2128586	268013	326629	82.59	163314.5	1064293.0	134006.5
G208M14_CKDL230025721-1A_HGLT2DSX7_L1_R1	5005555	5005555	2180227	2611643	213685	1115478	1714263	223367	191868	82.88	95934.0	857131.5	111683.5
G208M9_CKDL230025721-1A_HGLT2DSX7_L1_R1	4507437	4507437	1609692	2178694	719051	741560	1235456	178932	321876	86.3	160938.0	617728.0	89466.0
README_Bowtie2.sh	250000	250000								95.16