Sample total_reads paired_total paired_aligned_none paired_aligned_one paired_aligned_multi paired_aligned_discord_one paired_aligned_mate_none paired_aligned_mate_one paired_aligned_mate_multi overall_alignment_rate paired_aligned_mate_multi_halved paired_aligned_mate_none_halved paired_aligned_mate_one_halved G207M5_CKDL230025720-1A_HGLT2DSX7_L1_R1 9781668 9781668 1758103 3287307 4736258 648044 1049046 298605 872467 94.64 436233.5 524523.0 149302.5 G207M6_CKDL230025720-1A_HGLT2DSX7_L1_R1 9652754 9652754 1957569 3490917 4204268 831802 1042405 321493 887636 94.6 443818.0 521202.5 160746.5 G207M7_CKDL230025720-1A_HGLT2DSX7_L1_R1 10534149 10534149 2606766 4019341 3908042 1375097 837825 436121 1189392 96.02 594696.0 418912.5 218060.5 G207M8_CKDL230025720-1A_HGLT2DSX7_L1_R1 12241194 12241194 2361062 4625132 5255000 910202 1520704 360691 1020325 93.79 510162.5 760352.0 180345.5 README_Bowtie2.sh 250000 250000 95.16