[2023-08-18 15:37:22,314] multiqc [DEBUG ] This is MultiQC v1.12 [2023-08-18 15:37:22,315] multiqc [DEBUG ] No MultiQC config found: /usr/lib/python3.8/site-packages/multiqc_config.yaml [2023-08-18 15:37:22,315] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2023-08-18 15:37:22,315] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-08-18 15:37:22,315] multiqc [DEBUG ] Command used: /usr/bin/multiqc -o G207_SG_CHIPSEQ_K9me3 ./G207_SG_CHIPSEQ_K9me3 [2023-08-18 15:37:22,569] multiqc [WARNING] MultiQC Version v1.15 now available! [2023-08-18 15:37:22,570] multiqc [DEBUG ] Command : /usr/bin/multiqc -o G207_SG_CHIPSEQ_K9me3 ./G207_SG_CHIPSEQ_K9me3 [2023-08-18 15:37:22,570] multiqc [DEBUG ] Working dir : /projectnb2/wax-dk/max [2023-08-18 15:37:22,570] multiqc [DEBUG ] Template : default [2023-08-18 15:37:22,570] multiqc [DEBUG ] Running Python 3.8.1 (default, Dec 26 2019, 14:42:08) [GCC 9.2.0] [2023-08-18 15:37:22,571] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2023-08-18 15:37:22,572] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp1o_0bp7o [2023-08-18 15:37:22,706] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G207_SG_CHIPSEQ_K9me3 [2023-08-18 15:37:23,045] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-08-18 15:37:23,049] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-08-18 15:37:23,049] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-08-18 15:37:23,058] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-08-18 15:37:23,076] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-08-18 15:37:23,102] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: copy_samples.py [2023-08-18 15:37:23,107] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: copy_samples.py [2023-08-18 15:37:23,107] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: copy_samples.py [2023-08-18 15:37:23,114] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: copy_samples.py [2023-08-18 15:37:23,131] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: copy_samples.py [2023-08-18 15:37:23,182] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-08-18 15:37:23,188] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-08-18 15:37:23,188] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-08-18 15:37:23,196] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-08-18 15:37:23,217] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-08-18 15:37:23,238] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-08-18 15:37:23,242] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-08-18 15:37:23,243] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-08-18 15:37:23,249] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-08-18 15:37:23,249] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-08-18 15:37:23,258] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-08-18 15:37:23,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: DNAChIPseq_pipeline.pdf [2023-08-18 15:37:23,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M8_CKDL230025720-1A_HGLT2DSX7_L1_R2.fastq.gz [2023-08-18 15:37:23,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M8_CKDL230025720-1A_HGLT2DSX7_L1_R1.fastq.gz [2023-08-18 15:37:23,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_sorted_mapped.bam.bai [2023-08-18 15:37:23,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_alignments.bam [2023-08-18 15:37:23,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_alignments.bam.bai [2023-08-18 15:37:23,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_sorted_mapped.bam [2023-08-18 15:37:23,286] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M08_read_Peak_Union.out1 [2023-08-18 15:37:23,290] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M08_read_Peak_Union.out1 [2023-08-18 15:37:23,291] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M08_read_Peak_Union.out1 [2023-08-18 15:37:23,297] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M08_read_Peak_Union.out1 [2023-08-18 15:37:23,298] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M08_read_Peak_Union.out1 [2023-08-18 15:37:23,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M08_read_Peak_Union.out1 [2023-08-18 15:37:23,298] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M08_read_Peak_Union.out1 [2023-08-18 15:37:23,298] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M08_read_Peak_Union.out1 [2023-08-18 15:37:23,298] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M08_read_Peak_Union.out1 [2023-08-18 15:37:23,298] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M08_read_Peak_Union.out1 [2023-08-18 15:37:23,298] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M08_read_Peak_Union.out1 [2023-08-18 15:37:23,318] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M08_read_Peak_Union.out1 [2023-08-18 15:37:24,017] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M08_read_Peak_Union.out1 [2023-08-18 15:37:24,056] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_filtered_StrgtPks.bam [2023-08-18 15:37:24,061] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_StrgtPksRm_tab.bed [2023-08-18 15:37:24,061] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_filtered_StrgtPks.bam.bai [2023-08-18 15:37:24,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_filtered_StrgtPks_sorted.bam [2023-08-18 15:37:24,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_StrgtPks_tab.bed [2023-08-18 15:37:24,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_filtered_StrgtPks_sorted.bam.bai [2023-08-18 15:37:24,068] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M08_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:24,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M08_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:24,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M08_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:24,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M08_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:24,086] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M08_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:24,104] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M08_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:24,107] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M08_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:24,107] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M08_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:24,112] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M08_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:24,112] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M08_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:24,183] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M08_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:24,231] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:24,235] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:24,235] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:24,241] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:24,241] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:24,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:24,241] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:24,241] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:24,241] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:24,241] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:24,242] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:24,248] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:24,498] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:24,514] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_broad_MACS2_peaks.broadPeak.bed [2023-08-18 15:37:24,521] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M08_read_MACS2_peaks.out1 [2023-08-18 15:37:24,525] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M08_read_MACS2_peaks.out1 [2023-08-18 15:37:24,525] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M08_read_MACS2_peaks.out1 [2023-08-18 15:37:24,531] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M08_read_MACS2_peaks.out1 [2023-08-18 15:37:24,531] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M08_read_MACS2_peaks.out1 [2023-08-18 15:37:24,589] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M08_read_MACS2_peaks.out1 [2023-08-18 15:37:24,654] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:24,659] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:24,659] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:24,665] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:24,666] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:24,666] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:24,666] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:24,666] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:24,666] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:24,666] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:24,904] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:24,924] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:24,927] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:24,927] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:24,939] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:24,939] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:24,950] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M08_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:24,952] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:37:24,953] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_narrow_MACS2_summits.bed [2023-08-18 15:37:24,953] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:37:24,960] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:37:24,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:37:24,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-18 15:37:24,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:37:24,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-18 15:37:24,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-18 15:37:24,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-18 15:37:25,000] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M08_metrics [2023-08-18 15:37:25,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M08_metrics [2023-08-18 15:37:25,004] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M08_metrics [2023-08-18 15:37:25,011] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M08_metrics [2023-08-18 15:37:25,026] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M08_metrics [2023-08-18 15:37:25,027] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_hist.pdf [2023-08-18 15:37:25,027] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08-W400-G2400-E100-islandfiltered.bed [2023-08-18 15:37:25,032] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100.scoreisland [2023-08-18 15:37:25,034] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100.scoreisland [2023-08-18 15:37:25,035] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100.scoreisland [2023-08-18 15:37:25,045] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100.scoreisland [2023-08-18 15:37:25,045] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100.scoreisland [2023-08-18 15:37:25,365] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100.scoreisland [2023-08-18 15:37:25,394] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:25,397] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:25,398] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:25,403] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:25,403] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:25,412] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:25,440] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-08-18 15:37:25,447] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M08_read_SICER.out1 [2023-08-18 15:37:25,449] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M08_read_SICER.out1 [2023-08-18 15:37:25,450] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M08_read_SICER.out1 [2023-08-18 15:37:25,454] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M08_read_SICER.out1 [2023-08-18 15:37:25,454] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M08_read_SICER.out1 [2023-08-18 15:37:25,455] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M08_read_SICER.out1 [2023-08-18 15:37:25,455] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M08_read_SICER.out1 [2023-08-18 15:37:25,455] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M08_read_SICER.out1 [2023-08-18 15:37:25,455] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M08_read_SICER.out1 [2023-08-18 15:37:25,455] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M08_read_SICER.out1 [2023-08-18 15:37:25,773] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M08_read_SICER.out1 [2023-08-18 15:37:25,823] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:25,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:25,834] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:25,840] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:25,840] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:25,840] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:25,841] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:25,841] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:25,841] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:25,841] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:25,841] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:25,841] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:25,841] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:36,949] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:37,618] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08-1-removed.bed [2023-08-18 15:37:37,618] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:37:37,618] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-08-18 15:37:37,624] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:37:37,628] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:37:37,645] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:37:37,645] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-08-18 15:37:37,645] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08-W400-G2400-E100.scoreisland_common.bed [2023-08-18 15:37:37,646] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08-W400-G2400-E100.scoreisland_unique.bed [2023-08-18 15:37:37,666] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-08-18 15:37:37,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-08-18 15:37:37,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-08-18 15:37:37,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-08-18 15:37:37,689] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-08-18 15:37:37,697] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: run.sh [2023-08-18 15:37:37,701] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: run.sh [2023-08-18 15:37:37,706] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: run.sh [2023-08-18 15:37:37,732] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_compact.R [2023-08-18 15:37:37,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_compact.R [2023-08-18 15:37:37,759] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_detailed.R [2023-08-18 15:37:37,762] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_detailed.R [2023-08-18 15:37:37,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: process_output_detailed.R [2023-08-18 15:37:37,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M5_CKDL230025720-1A_HGLT2DSX7_L1_R1.fastq.gz [2023-08-18 15:37:37,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M5_CKDL230025720-1A_HGLT2DSX7_L1_R2.fastq.gz [2023-08-18 15:37:37,787] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_alignments.bam [2023-08-18 15:37:37,787] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_sorted_mapped.bam [2023-08-18 15:37:37,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_sorted_mapped.bam.bai [2023-08-18 15:37:37,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_alignments.bam.bai [2023-08-18 15:37:37,821] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M05_read_Peak_Union.out1 [2023-08-18 15:37:37,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M05_read_Peak_Union.out1 [2023-08-18 15:37:37,830] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M05_read_Peak_Union.out1 [2023-08-18 15:37:37,836] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M05_read_Peak_Union.out1 [2023-08-18 15:37:37,836] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M05_read_Peak_Union.out1 [2023-08-18 15:37:37,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M05_read_Peak_Union.out1 [2023-08-18 15:37:37,836] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M05_read_Peak_Union.out1 [2023-08-18 15:37:37,836] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M05_read_Peak_Union.out1 [2023-08-18 15:37:37,836] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M05_read_Peak_Union.out1 [2023-08-18 15:37:37,836] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M05_read_Peak_Union.out1 [2023-08-18 15:37:37,836] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M05_read_Peak_Union.out1 [2023-08-18 15:37:37,849] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M05_read_Peak_Union.out1 [2023-08-18 15:37:38,558] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M05_read_Peak_Union.out1 [2023-08-18 15:37:38,603] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_filtered_StrgtPks_sorted.bam [2023-08-18 15:37:38,604] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_StrgtPksRm_tab.bed [2023-08-18 15:37:38,604] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_filtered_StrgtPks.bam.bai [2023-08-18 15:37:38,604] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_filtered_StrgtPks.bam [2023-08-18 15:37:38,605] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_StrgtPks_tab.bed [2023-08-18 15:37:38,605] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_filtered_StrgtPks_sorted.bam.bai [2023-08-18 15:37:38,626] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:38,630] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:38,631] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:38,638] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:38,639] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:38,746] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:38,758] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M05_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:38,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M05_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:38,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M05_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:38,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M05_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:38,774] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M05_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:38,798] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M05_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:38,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M05_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:38,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M05_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:38,810] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M05_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:38,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M05_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:38,878] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M05_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:38,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_broad_MACS2_peaks.broadPeak.bed [2023-08-18 15:37:38,886] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_narrow_MACS2_summits.bed [2023-08-18 15:37:38,893] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:38,896] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:38,896] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:38,902] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:38,910] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:38,911] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:37:38,946] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:38,950] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:38,951] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:38,957] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:38,957] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:39,074] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M05_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:39,105] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M05_read_MACS2_peaks.out1 [2023-08-18 15:37:39,109] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M05_read_MACS2_peaks.out1 [2023-08-18 15:37:39,110] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M05_read_MACS2_peaks.out1 [2023-08-18 15:37:39,116] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M05_read_MACS2_peaks.out1 [2023-08-18 15:37:39,117] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M05_read_MACS2_peaks.out1 [2023-08-18 15:37:39,182] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M05_read_MACS2_peaks.out1 [2023-08-18 15:37:39,209] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:37:39,209] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-18 15:37:39,210] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-18 15:37:39,215] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:37:39,219] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:37:39,234] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:37:39,234] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-18 15:37:39,235] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-18 15:37:39,247] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M05_metrics [2023-08-18 15:37:39,249] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M05_metrics [2023-08-18 15:37:39,249] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M05_metrics [2023-08-18 15:37:39,256] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M05_metrics [2023-08-18 15:37:39,278] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M05_metrics [2023-08-18 15:37:39,280] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_hist.pdf [2023-08-18 15:37:39,311] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:39,314] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:39,315] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:39,321] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:39,321] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:39,322] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:39,322] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:39,322] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:39,322] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:39,322] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:39,322] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:39,322] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:39,322] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:45,810] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:46,206] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05-W400-G2400-E100-islandfiltered.bed [2023-08-18 15:37:46,212] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:46,215] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:46,216] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:46,222] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:46,222] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:46,231] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:46,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-08-18 15:37:46,269] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland [2023-08-18 15:37:46,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland [2023-08-18 15:37:46,274] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland [2023-08-18 15:37:46,284] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland [2023-08-18 15:37:46,284] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland [2023-08-18 15:37:46,284] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland [2023-08-18 15:37:46,285] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland [2023-08-18 15:37:46,285] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland [2023-08-18 15:37:46,285] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland [2023-08-18 15:37:46,285] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland [2023-08-18 15:37:46,731] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M05-W400-G2400-E100.scoreisland [2023-08-18 15:37:46,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M05_read_SICER.out1 [2023-08-18 15:37:46,762] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M05_read_SICER.out1 [2023-08-18 15:37:46,762] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M05_read_SICER.out1 [2023-08-18 15:37:46,767] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M05_read_SICER.out1 [2023-08-18 15:37:46,767] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M05_read_SICER.out1 [2023-08-18 15:37:46,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M05_read_SICER.out1 [2023-08-18 15:37:46,767] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M05_read_SICER.out1 [2023-08-18 15:37:46,767] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M05_read_SICER.out1 [2023-08-18 15:37:46,768] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M05_read_SICER.out1 [2023-08-18 15:37:46,768] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M05_read_SICER.out1 [2023-08-18 15:37:46,768] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M05_read_SICER.out1 [2023-08-18 15:37:46,776] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M05_read_SICER.out1 [2023-08-18 15:37:47,231] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M05_read_SICER.out1 [2023-08-18 15:37:47,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05-1-removed.bed [2023-08-18 15:37:47,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:37:47,271] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:37:47,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:37:47,291] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-08-18 15:37:47,292] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-08-18 15:37:47,293] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:37:47,294] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05-W400-G2400-E100.scoreisland_unique.bed [2023-08-18 15:37:47,294] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05-W400-G2400-E100.scoreisland_common.bed [2023-08-18 15:37:47,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M7_CKDL230025720-1A_HGLT2DSX7_L1_R1.fastq.gz [2023-08-18 15:37:47,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M7_CKDL230025720-1A_HGLT2DSX7_L1_R2.fastq.gz [2023-08-18 15:37:47,324] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_sorted_mapped.bam.bai [2023-08-18 15:37:47,325] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_alignments.bam.bai [2023-08-18 15:37:47,325] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_alignments.bam [2023-08-18 15:37:47,325] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_sorted_mapped.bam [2023-08-18 15:37:47,332] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:37:47,334] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:37:47,334] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:37:47,338] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:37:47,338] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:37:47,338] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:37:47,338] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:37:47,338] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:37:47,338] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:37:47,338] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:37:47,338] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:37:47,353] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:37:48,101] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:37:48,155] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M07_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:48,158] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M07_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:48,158] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M07_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:48,163] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M07_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:48,194] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M07_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:37:48,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M07_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:48,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M07_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:48,203] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M07_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:48,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M07_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:48,214] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M07_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:37:48,221] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:48,224] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:48,225] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:48,230] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:48,238] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:37:48,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:37:48,242] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_broad_MACS2_peaks.broadPeak.bed [2023-08-18 15:37:48,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_narrow_MACS2_summits.bed [2023-08-18 15:37:48,269] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:48,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:48,274] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:48,285] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:48,286] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:48,413] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.gappedPeak [2023-08-18 15:37:48,446] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:48,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:48,450] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:48,457] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:48,457] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:48,573] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M07_broad_MACS2_peaks.broadPeak [2023-08-18 15:37:48,625] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M07_read_MACS2_peaks.out1 [2023-08-18 15:37:48,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M07_read_MACS2_peaks.out1 [2023-08-18 15:37:48,628] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M07_read_MACS2_peaks.out1 [2023-08-18 15:37:48,633] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M07_read_MACS2_peaks.out1 [2023-08-18 15:37:48,653] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M07_read_MACS2_peaks.out1 [2023-08-18 15:37:48,655] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:37:48,660] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:37:48,662] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:37:48,675] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-18 15:37:48,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-18 15:37:48,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-18 15:37:48,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:37:48,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-18 15:37:48,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_StrgtPksRm_tab.bed [2023-08-18 15:37:48,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_StrgtPks_tab.bed [2023-08-18 15:37:48,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_filtered_StrgtPks.bam [2023-08-18 15:37:48,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_filtered_StrgtPks_sorted.bam.bai [2023-08-18 15:37:48,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_filtered_StrgtPks_sorted.bam [2023-08-18 15:37:48,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_filtered_StrgtPks.bam.bai [2023-08-18 15:37:48,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M07_metrics [2023-08-18 15:37:48,687] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M07_metrics [2023-08-18 15:37:48,687] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M07_metrics [2023-08-18 15:37:48,691] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M07_metrics [2023-08-18 15:37:48,705] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M07_metrics [2023-08-18 15:37:48,707] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_hist.pdf [2023-08-18 15:37:48,733] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M07_read_SICER.out1 [2023-08-18 15:37:48,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M07_read_SICER.out1 [2023-08-18 15:37:48,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M07_read_SICER.out1 [2023-08-18 15:37:48,742] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M07_read_SICER.out1 [2023-08-18 15:37:48,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M07_read_SICER.out1 [2023-08-18 15:37:48,742] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M07_read_SICER.out1 [2023-08-18 15:37:48,742] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M07_read_SICER.out1 [2023-08-18 15:37:48,742] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M07_read_SICER.out1 [2023-08-18 15:37:48,742] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M07_read_SICER.out1 [2023-08-18 15:37:48,742] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M07_read_SICER.out1 [2023-08-18 15:37:49,059] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M07_read_SICER.out1 [2023-08-18 15:37:49,077] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07-W400-G2400-E100-islandfiltered.bed [2023-08-18 15:37:49,081] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:49,084] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:49,084] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:49,089] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:49,089] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:49,097] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:49,128] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:49,132] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:49,133] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:49,138] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:49,138] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:49,139] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:49,139] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:49,139] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:49,139] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:49,139] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:49,139] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:49,139] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:49,139] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:57,320] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:57,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07-1-removed.bed [2023-08-18 15:37:57,825] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100.scoreisland [2023-08-18 15:37:57,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100.scoreisland [2023-08-18 15:37:57,828] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100.scoreisland [2023-08-18 15:37:57,833] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100.scoreisland [2023-08-18 15:37:57,833] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100.scoreisland [2023-08-18 15:37:58,143] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M07-W400-G2400-E100.scoreisland [2023-08-18 15:37:58,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-08-18 15:37:58,190] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-08-18 15:37:58,190] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:37:58,200] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:37:58,203] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:37:58,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07-W400-G2400-E100.scoreisland_unique.bed [2023-08-18 15:37:58,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-08-18 15:37:58,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:37:58,220] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07-W400-G2400-E100.scoreisland_common.bed [2023-08-18 15:37:58,223] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M6_CKDL230025720-1A_HGLT2DSX7_L1_R2.fastq.gz [2023-08-18 15:37:58,224] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M6_CKDL230025720-1A_HGLT2DSX7_L1_R1.fastq.gz [2023-08-18 15:37:58,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_sorted_mapped.bam.bai [2023-08-18 15:37:58,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_alignments.bam.bai [2023-08-18 15:37:58,247] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_alignments.bam [2023-08-18 15:37:58,248] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_sorted_mapped.bam [2023-08-18 15:37:58,253] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:37:58,256] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:37:58,257] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:37:58,261] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:37:58,261] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:37:58,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:37:58,261] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:37:58,262] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:37:58,262] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:37:58,262] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:37:58,262] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:37:58,276] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:37:59,020] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:37:59,065] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_StrgtPks_tab.bed [2023-08-18 15:37:59,066] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_StrgtPksRm_tab.bed [2023-08-18 15:37:59,066] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_filtered_StrgtPks.bam.bai [2023-08-18 15:37:59,067] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_filtered_StrgtPks_sorted.bam [2023-08-18 15:37:59,068] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_filtered_StrgtPks.bam [2023-08-18 15:37:59,068] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_filtered_StrgtPks_sorted.bam.bai [2023-08-18 15:37:59,094] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06-W400-G2400-E100-islandfiltered.bed [2023-08-18 15:37:59,094] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06-1-removed.bed [2023-08-18 15:37:59,101] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:59,105] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:59,105] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:59,111] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:59,111] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:59,119] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland.bb [2023-08-18 15:37:59,158] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:59,163] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:59,164] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:59,171] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:59,171] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:59,171] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:59,171] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:59,172] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:59,172] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:59,172] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:59,172] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:59,172] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:37:59,172] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:38:07,181] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:38:07,699] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M06_read_SICER.out1 [2023-08-18 15:38:07,703] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M06_read_SICER.out1 [2023-08-18 15:38:07,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M06_read_SICER.out1 [2023-08-18 15:38:07,710] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M06_read_SICER.out1 [2023-08-18 15:38:07,710] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M06_read_SICER.out1 [2023-08-18 15:38:07,710] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M06_read_SICER.out1 [2023-08-18 15:38:07,711] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M06_read_SICER.out1 [2023-08-18 15:38:07,711] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M06_read_SICER.out1 [2023-08-18 15:38:07,711] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M06_read_SICER.out1 [2023-08-18 15:38:07,711] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M06_read_SICER.out1 [2023-08-18 15:38:07,711] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M06_read_SICER.out1 [2023-08-18 15:38:07,721] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M06_read_SICER.out1 [2023-08-18 15:38:08,138] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M06_read_SICER.out1 [2023-08-18 15:38:08,163] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-08-18 15:38:08,169] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland [2023-08-18 15:38:08,172] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland [2023-08-18 15:38:08,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland [2023-08-18 15:38:08,177] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland [2023-08-18 15:38:08,177] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland [2023-08-18 15:38:08,177] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland [2023-08-18 15:38:08,178] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland [2023-08-18 15:38:08,178] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland [2023-08-18 15:38:08,178] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland [2023-08-18 15:38:08,178] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland [2023-08-18 15:38:08,577] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M06-W400-G2400-E100.scoreisland [2023-08-18 15:38:08,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06-W400-G2400-E100.scoreisland_unique.bed [2023-08-18 15:38:08,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:38:08,607] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-08-18 15:38:08,614] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:38:08,619] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:38:08,637] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-08-18 15:38:08,638] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:38:08,639] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06-W400-G2400-E100.scoreisland_common.bed [2023-08-18 15:38:08,660] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M06_metrics [2023-08-18 15:38:08,665] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M06_metrics [2023-08-18 15:38:08,666] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M06_metrics [2023-08-18 15:38:08,672] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M06_metrics [2023-08-18 15:38:08,691] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M06_metrics [2023-08-18 15:38:08,692] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_hist.pdf [2023-08-18 15:38:08,720] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M06_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:38:08,724] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M06_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:38:08,725] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M06_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:38:08,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M06_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:38:08,755] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M06_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:38:08,765] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M06_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:38:08,767] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M06_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:38:08,768] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M06_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:38:08,772] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M06_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:38:08,781] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M06_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:38:08,809] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_narrow_MACS2_summits.bed [2023-08-18 15:38:08,823] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:38:08,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:38:08,828] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:38:08,833] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:38:08,842] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:38:08,876] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M06_read_MACS2_peaks.out1 [2023-08-18 15:38:08,880] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M06_read_MACS2_peaks.out1 [2023-08-18 15:38:08,880] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M06_read_MACS2_peaks.out1 [2023-08-18 15:38:08,887] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M06_read_MACS2_peaks.out1 [2023-08-18 15:38:08,911] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M06_read_MACS2_peaks.out1 [2023-08-18 15:38:08,986] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.gappedPeak [2023-08-18 15:38:08,991] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.gappedPeak [2023-08-18 15:38:08,991] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.gappedPeak [2023-08-18 15:38:08,997] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.gappedPeak [2023-08-18 15:38:08,998] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.gappedPeak [2023-08-18 15:38:09,111] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.gappedPeak [2023-08-18 15:38:09,117] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_broad_MACS2_peaks.broadPeak.bed [2023-08-18 15:38:09,143] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.broadPeak [2023-08-18 15:38:09,148] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.broadPeak [2023-08-18 15:38:09,148] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.broadPeak [2023-08-18 15:38:09,155] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.broadPeak [2023-08-18 15:38:09,155] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.broadPeak [2023-08-18 15:38:09,259] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M06_broad_MACS2_peaks.broadPeak [2023-08-18 15:38:09,266] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:38:09,266] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-18 15:38:09,267] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:38:09,267] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-18 15:38:09,273] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:38:09,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:38:09,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-18 15:38:09,299] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:38:09,299] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-18 15:38:09,390] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: index [2023-08-18 15:38:09,394] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: index [2023-08-18 15:38:09,394] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: index [2023-08-18 15:38:09,403] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: index [2023-08-18 15:38:09,412] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: index [2023-08-18 15:38:09,596] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-08-18 15:38:09,599] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-08-18 15:38:09,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-08-18 15:38:09,618] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-commit.sample [2023-08-18 15:38:09,620] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-commit.sample [2023-08-18 15:38:09,637] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: update.sample [2023-08-18 15:38:09,640] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: update.sample [2023-08-18 15:38:09,644] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: update.sample [2023-08-18 15:38:09,696] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-push.sample [2023-08-18 15:38:09,700] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-push.sample [2023-08-18 15:38:09,777] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-rebase.sample [2023-08-18 15:38:09,781] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pre-rebase.sample [2023-08-18 15:38:09,782] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-rebase.sample [2023-08-18 15:38:09,789] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pre-rebase.sample [2023-08-18 15:38:09,805] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pre-rebase.sample [2023-08-18 15:38:09,813] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: prepare-commit-msg.sample [2023-08-18 15:38:09,816] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: prepare-commit-msg.sample [2023-08-18 15:38:10,056] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.pack [2023-08-18 15:38:10,058] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.pack [2023-08-18 15:38:10,059] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.pack [2023-08-18 15:38:10,064] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.pack [2023-08-18 15:38:10,064] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.pack [2023-08-18 15:38:10,065] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.pack [2023-08-18 15:38:10,065] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.pack [2023-08-18 15:38:10,065] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.pack [2023-08-18 15:38:10,066] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.pack [2023-08-18 15:38:10,066] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.pack [2023-08-18 15:38:10,066] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.pack [2023-08-18 15:38:10,066] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.pack [2023-08-18 15:38:10,066] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.pack [2023-08-18 15:38:10,078] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.pack [2023-08-18 15:38:10,091] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.idx [2023-08-18 15:38:10,094] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.idx [2023-08-18 15:38:10,094] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.idx [2023-08-18 15:38:10,099] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.idx [2023-08-18 15:38:10,109] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pack-039980b3da0b86739a2e37ad0f7f946d667d1f09.idx [2023-08-18 15:38:10,118] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 4805d0931570cb8c3590da8e37fb0b85bb5374 [2023-08-18 15:38:10,121] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 4805d0931570cb8c3590da8e37fb0b85bb5374 [2023-08-18 15:38:10,126] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 4805d0931570cb8c3590da8e37fb0b85bb5374 [2023-08-18 15:38:10,251] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_diffReps.sh [2023-08-18 15:38:10,254] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_diffReps.sh [2023-08-18 15:38:10,255] multiqc [DEBUG ] File ignored by 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[DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_10_G207_K9me3_diffReps_1.o47172 [2023-08-18 15:38:10,466] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffReps_Summary.R [2023-08-18 15:38:10,469] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffReps_Summary.R [2023-08-18 15:38:10,469] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffReps_Summary.R [2023-08-18 15:38:10,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffReps_Summary.R [2023-08-18 15:38:10,505] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffReps_Summary.R [2023-08-18 15:38:10,518] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffReps_Summary.sh [2023-08-18 15:38:10,521] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffReps_Summary.sh [2023-08-18 15:38:10,521] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffReps_Summary.sh [2023-08-18 15:38:10,526] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffReps_Summary.sh [2023-08-18 15:38:10,548] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffReps_Summary.sh [2023-08-18 15:38:10,599] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment [2023-08-18 15:38:10,604] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment [2023-08-18 15:38:10,604] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment [2023-08-18 15:38:10,610] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment [2023-08-18 15:38:10,610] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment [2023-08-18 15:38:10,683] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment [2023-08-18 15:38:10,703] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.hotspot [2023-08-18 15:38:10,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.hotspot [2023-08-18 15:38:10,707] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize 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because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.annotated [2023-08-18 15:38:10,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.annotated [2023-08-18 15:38:10,877] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.annotated [2023-08-18 15:38:10,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08-W400-G2400-E100.scoreisland.bed [2023-08-18 15:38:10,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06-W400-G2400-E100.scoreisland.bed [2023-08-18 15:38:10,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07-W400-G2400-E100.scoreisland.bed [2023-08-18 15:38:10,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05-W400-G2400-E100.scoreisland.bed [2023-08-18 15:38:10,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-08-18 15:38:10,919] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.annotated.peaks [2023-08-18 15:38:10,924] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.annotated.peaks [2023-08-18 15:38:10,925] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.annotated.peaks [2023-08-18 15:38:10,931] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.annotated.peaks [2023-08-18 15:38:10,931] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.annotated.peaks [2023-08-18 15:38:10,997] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.annotated.peaks [2023-08-18 15:38:11,024] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.annotated.nopeaks [2023-08-18 15:38:11,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.annotated.nopeaks [2023-08-18 15:38:11,029] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.annotated.nopeaks [2023-08-18 15:38:11,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.annotated.nopeaks [2023-08-18 15:38:11,060] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffReps_Female_Control.vs.Male_Treatment.annotated.nopeaks [2023-08-18 15:38:11,061] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_FDR_Barchart.pdf [2023-08-18 15:38:11,088] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_Histogram.pdf [2023-08-18 15:38:11,093] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Male_Treatment_diffReps_1.peak_filtered.bed [2023-08-18 15:38:11,093] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Female_Control_diffReps_1.peak_filtered.bed [2023-08-18 15:38:11,100] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Male_Treatment_diffReps_1_annotated.txt [2023-08-18 15:38:11,104] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Male_Treatment_diffReps_1_annotated.txt [2023-08-18 15:38:11,109] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Male_Treatment_diffReps_1_annotated.txt [2023-08-18 15:38:11,141] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Female_Control_diffReps_1_annotated.txt [2023-08-18 15:38:11,146] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Female_Control_diffReps_1_annotated.txt [2023-08-18 15:38:11,146] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Female_Control_diffReps_1_annotated.txt [2023-08-18 15:38:11,158] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Female_Control_diffReps_1_annotated.txt [2023-08-18 15:38:11,172] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Female_Control_diffReps_1_annotated.txt [2023-08-18 15:38:11,174] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_Peaks_UCSC.bed [2023-08-18 15:38:11,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_Hotspots_UCSC.bed [2023-08-18 15:38:11,225] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: BG_Sites_diffReps_1.bed [2023-08-18 15:38:11,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Male_Treatment_diffReps_Top_600.peak_filtered.bed [2023-08-18 15:38:11,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Male_Treatment_diffReps_Top_200.peak_filtered.bed [2023-08-18 15:38:11,227] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_FDR_Barchart.pdf [2023-08-18 15:38:11,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_Histogram.pdf [2023-08-18 15:38:11,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Male_Treatment_diffReps_1.bed [2023-08-18 15:38:11,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Female_Control_diffReps_1.bed [2023-08-18 15:38:11,292] multiqc [DEBUG ] File ignored by 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exceeded search pattern filesize limit: Female_Control_diffReps_1_annotated.txt [2023-08-18 15:38:11,382] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Female_Control_diffReps_1_annotated.txt [2023-08-18 15:38:11,390] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Female_Control_diffReps_1_annotated.txt [2023-08-18 15:38:11,403] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Female_Control_diffReps_1_annotated.txt [2023-08-18 15:38:11,406] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_Peaks_UCSC.bed [2023-08-18 15:38:11,427] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_Hotspots_UCSC.bed [2023-08-18 15:38:11,433] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Male_Treatment_diffReps_1_screenshot.txt [2023-08-18 15:38:11,435] multiqc 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diffReps_Female_Control.vs.Male_Treatment.annotated.nopeaks [2023-08-18 15:38:11,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_FDR_Barchart.pdf [2023-08-18 15:38:11,963] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_Histogram.pdf [2023-08-18 15:38:11,967] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Male_Treatment_diffReps_1.peak_filtered.bed [2023-08-18 15:38:11,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Female_Control_diffReps_1.peak_filtered.bed [2023-08-18 15:38:11,984] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Male_Treatment_diffReps_1_annotated.txt [2023-08-18 15:38:11,987] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Male_Treatment_diffReps_1_annotated.txt [2023-08-18 15:38:11,988] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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15:38:12,065] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_Hotspots_UCSC.bed [2023-08-18 15:38:12,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: BG_Sites_diffReps_1.bed [2023-08-18 15:38:12,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Male_Treatment_diffReps_Top_600.peak_filtered.bed [2023-08-18 15:38:12,088] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Male_Treatment_diffReps_Top_200.peak_filtered.bed [2023-08-18 15:38:12,089] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_FDR_Barchart.pdf [2023-08-18 15:38:12,123] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_Histogram.pdf [2023-08-18 15:38:12,129] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Male_Treatment_diffReps_1.bed [2023-08-18 15:38:12,130] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Female_Control_diffReps_1.bed [2023-08-18 15:38:12,150] multiqc [DEBUG ] File 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15:38:12,292] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:12,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:12,315] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G207_K9me3_G207M05.o43586 [2023-08-18 15:38:12,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G207_K9me3_G207M05.o43586 [2023-08-18 15:38:12,318] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G207_K9me3_G207M05.o43586 [2023-08-18 15:38:12,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G207_K9me3_G207M05.o43586 [2023-08-18 15:38:12,346] multiqc [DEBUG ] File ignored by nanostat because it exceeded 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15:38:12,618] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M5_CKDL230025720-1A_HGLT2DSX7_L1_R1_fastqc.html [2023-08-18 15:38:12,626] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M5_CKDL230025720-1A_HGLT2DSX7_L1_R1_fastqc.html [2023-08-18 15:38:12,627] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M5_CKDL230025720-1A_HGLT2DSX7_L1_R1_fastqc.html [2023-08-18 15:38:12,672] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M5_CKDL230025720-1A_HGLT2DSX7_L1_R1_fastqc.html [2023-08-18 15:38:12,700] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M5_CKDL230025720-1A_HGLT2DSX7_L1_R2_fastqc.html [2023-08-18 15:38:12,704] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-08-18 15:38:15,180] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-08-18 15:38:15,181] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-08-18 15:38:15,186] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-08-18 15:38:15,204] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-08-18 15:38:15,214] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:38:15,217] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt 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limit: Step_09_G207_K9me3_G207M05.o44579 [2023-08-18 15:38:15,378] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-08-18 15:38:15,387] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-08-18 15:38:15,388] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-08-18 15:38:15,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-08-18 15:38:15,418] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-08-18 15:38:15,476] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M08_read_Peak_Union.out1 [2023-08-18 15:38:15,478] multiqc [DEBUG ] File ignored by 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multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:38:16,261] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:38:16,278] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:38:16,278] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:38:16,278] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:38:16,278] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M06_read_Peak_Union.out1 [2023-08-18 15:38:16,278] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern 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15:38:17,057] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:38:17,058] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:38:17,063] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:38:17,063] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:38:17,063] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:38:17,063] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M07_read_Peak_Union.out1 [2023-08-18 15:38:17,063] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded 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15:38:18,644] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G207_K9me3_G207M08.o44431 [2023-08-18 15:38:18,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G207_K9me3_G207M08.o44431 [2023-08-18 15:38:18,662] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G207_K9me3_G207M08.o44431 [2023-08-18 15:38:18,693] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G207_K9me3_G207M05.o44428 [2023-08-18 15:38:18,697] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G207_K9me3_G207M05.o44428 [2023-08-18 15:38:18,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G207_K9me3_G207M05.o44428 [2023-08-18 15:38:18,705] multiqc [DEBUG ] File ignored by 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15:38:18,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:38:18,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:38:18,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-08-18 15:38:18,891] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-08-18 15:38:18,896] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-08-18 15:38:18,919] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-08-18 15:38:18,921] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-08-18 15:38:18,921] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-08-18 15:38:18,927] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-08-18 15:38:18,941] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-08-18 15:38:18,947] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:18,949] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:18,949] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:18,956] multiqc [DEBUG ] File ignored by 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15:38:19,121] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G207_K9me3_G207M07.o43885 [2023-08-18 15:38:19,122] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G207_K9me3_G207M07.o43885 [2023-08-18 15:38:19,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G207_K9me3_G207M07.o43885 [2023-08-18 15:38:19,142] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G207_K9me3_G207M07.o43885 [2023-08-18 15:38:19,197] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-08-18 15:38:19,201] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-08-18 15:38:19,202] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search 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exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:19,290] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:19,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:19,304] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:19,335] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G207_K9me3_G207M06.o43884 [2023-08-18 15:38:19,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G207_K9me3_G207M06.o43884 [2023-08-18 15:38:19,339] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G207_K9me3_G207M06.o43884 [2023-08-18 15:38:19,348] multiqc [DEBUG ] File ignored by 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filesize limit: Step_06a_G207_K9me3_G207M05.o43883 [2023-08-18 15:38:19,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_RmStraightPk.sh [2023-08-18 15:38:19,418] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_RmStraightPk.sh [2023-08-18 15:38:19,423] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_RmStraightPk.sh [2023-08-18 15:38:19,498] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: remove_straight_peaks.py [2023-08-18 15:38:19,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: remove_straight_peaks.py [2023-08-18 15:38:19,504] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: remove_straight_peaks.py [2023-08-18 15:38:19,511] multiqc [DEBUG ] File ignored by 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[DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:19,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:19,779] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:19,786] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_normbigWig.sh [2023-08-18 15:38:19,788] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_normbigWig.sh [2023-08-18 15:38:19,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_normbigWig.sh [2023-08-18 15:38:19,829] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M06.o44599 [2023-08-18 15:38:19,833] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M06.o44599 [2023-08-18 15:38:19,833] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M06.o44599 [2023-08-18 15:38:19,840] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M06.o44599 [2023-08-18 15:38:19,857] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M06.o44599 [2023-08-18 15:38:19,879] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M05.o44598 [2023-08-18 15:38:19,882] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M05.o44598 [2023-08-18 15:38:19,883] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M05.o44598 [2023-08-18 15:38:19,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M05.o44598 [2023-08-18 15:38:19,903] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M05.o44598 [2023-08-18 15:38:19,928] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M07.o44600 [2023-08-18 15:38:19,932] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M07.o44600 [2023-08-18 15:38:19,932] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M07.o44600 [2023-08-18 15:38:19,939] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M08.o44601 [2023-08-18 15:38:20,015] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M08.o44601 [2023-08-18 15:38:20,027] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G207_K9me3_G207M08.o44601 [2023-08-18 15:38:20,033] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:20,036] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:20,037] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:20,043] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:20,053] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:20,061] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: normbigWig.qsub [2023-08-18 15:38:20,070] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: normbigWig.qsub [2023-08-18 15:38:20,071] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: normbigWig.qsub [2023-08-18 15:38:20,076] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: normbigWig.qsub [2023-08-18 15:38:20,091] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: normbigWig.qsub [2023-08-18 15:38:20,110] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: BAM_to_WIG.sh [2023-08-18 15:38:20,114] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: BAM_to_WIG.sh [2023-08-18 15:38:20,115] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: BAM_to_WIG.sh [2023-08-18 15:38:20,122] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: BAM_to_WIG.sh [2023-08-18 15:38:20,137] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: BAM_to_WIG.sh [2023-08-18 15:38:20,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bigWigToWig [2023-08-18 15:38:20,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bigWigToWig [2023-08-18 15:38:20,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bigWigToWig [2023-08-18 15:38:20,189] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 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15:38:20,241] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bedGraphToBigWig [2023-08-18 15:38:20,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:20,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:20,327] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:20,334] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:20,356] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:20,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: SICER.qsub [2023-08-18 15:38:20,366] multiqc [DEBUG ] 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[2023-08-18 15:38:20,528] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_macs2.sh [2023-08-18 15:38:20,532] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_macs2.sh [2023-08-18 15:38:20,571] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:38:20,574] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:38:20,583] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:38:20,609] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:20,612] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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15:38:22,719] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06-W400-G2400-E100.scoreisland.bed [2023-08-18 15:38:22,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Chr_Peak_Counts.pdf [2023-08-18 15:38:22,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07-W400-G2400-E100.scoreisland.bed [2023-08-18 15:38:22,721] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05-W400-G2400-E100.scoreisland.bed [2023-08-18 15:38:22,721] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08-W400-G2400-E100.scoreisland.bed [2023-08-18 15:38:22,722] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06-W400-G2400-E100.scoreisland.bed [2023-08-18 15:38:22,722] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07-W400-G2400-E100.scoreisland.bed [2023-08-18 15:38:22,723] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05-W400-G2400-E100.scoreisland.bed [2023-08-18 15:38:22,723] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-08-18 15:38:22,732] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-08-18 15:38:22,735] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-08-18 15:38:22,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-08-18 15:38:22,741] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-08-18 15:38:22,759] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-08-18 15:38:22,789] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-08-18 15:38:22,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-08-18 15:38:22,805] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-08-18 15:38:22,819] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-08-18 15:38:22,833] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-08-18 15:38:22,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:38:22,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:38:22,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:38:22,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: chrom_state_legend.pdf [2023-08-18 15:38:22,918] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207_K9me3_Tracks_PileUp.txt [2023-08-18 15:38:22,926] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207_K9me3_Tracks_PileUp.txt [2023-08-18 15:38:22,926] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207_K9me3_Tracks_PileUp.txt [2023-08-18 15:38:22,934] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207_K9me3_Tracks_PileUp.txt [2023-08-18 15:38:22,946] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207_K9me3_Tracks_PileUp.txt [2023-08-18 15:38:22,968] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207_K9me3_Tracks_Wiggle_autoON.txt [2023-08-18 15:38:22,972] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207_K9me3_Tracks_Wiggle_autoON.txt [2023-08-18 15:38:22,972] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207_K9me3_Tracks_Wiggle_autoON.txt [2023-08-18 15:38:22,979] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207_K9me3_Tracks_Wiggle_autoON.txt [2023-08-18 15:38:22,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207_K9me3_Tracks_Wiggle_autoON.txt [2023-08-18 15:38:22,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207_K9me3_Tracks_Wiggle.txt [2023-08-18 15:38:23,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207_K9me3_Tracks_Wiggle.txt [2023-08-18 15:38:23,001] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207_K9me3_Tracks_Wiggle.txt [2023-08-18 15:38:23,006] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207_K9me3_Tracks_Wiggle.txt [2023-08-18 15:38:23,016] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207_K9me3_Tracks_Wiggle.txt [2023-08-18 15:38:23,031] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:23,034] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:23,034] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:23,040] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:23,061] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:38:23,082] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M07.o44465 [2023-08-18 15:38:23,085] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M07.o44465 [2023-08-18 15:38:23,086] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M07.o44465 [2023-08-18 15:38:23,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M07.o44465 [2023-08-18 15:38:23,105] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M07.o44465 [2023-08-18 15:38:23,112] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: macs2.qsub [2023-08-18 15:38:23,115] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: macs2.qsub [2023-08-18 15:38:23,115] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: macs2.qsub [2023-08-18 15:38:23,120] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: macs2.qsub [2023-08-18 15:38:23,140] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: macs2.qsub [2023-08-18 15:38:23,161] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M08.o44466 [2023-08-18 15:38:23,163] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M08.o44466 [2023-08-18 15:38:23,164] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M08.o44466 [2023-08-18 15:38:23,169] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M08.o44466 [2023-08-18 15:38:23,187] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M08.o44466 [2023-08-18 15:38:23,216] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M05.o44463 [2023-08-18 15:38:23,220] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M05.o44463 [2023-08-18 15:38:23,221] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M05.o44463 [2023-08-18 15:38:23,227] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M05.o44463 [2023-08-18 15:38:23,248] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M05.o44463 [2023-08-18 15:38:23,256] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_macs2.sh [2023-08-18 15:38:23,260] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_macs2.sh [2023-08-18 15:38:23,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_macs2.sh [2023-08-18 15:38:23,315] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:38:23,319] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:38:23,325] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:38:23,341] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:23,350] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:38:23,400] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M06.o44464 [2023-08-18 15:38:23,405] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M06.o44464 [2023-08-18 15:38:23,405] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M06.o44464 [2023-08-18 15:38:23,411] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M06.o44464 [2023-08-18 15:38:23,425] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G207_K9me3_G207M06.o44464 [2023-08-18 15:38:23,460] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: overlap.R [2023-08-18 15:38:23,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: overlap.R [2023-08-18 15:38:23,465] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: overlap.R [2023-08-18 15:38:23,472] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: overlap.R [2023-08-18 15:38:23,484] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: overlap.R [2023-08-18 15:38:23,501] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: overlap.sh [2023-08-18 15:38:23,505] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: overlap.sh [2023-08-18 15:38:23,506] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: overlap.sh [2023-08-18 15:38:23,512] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: overlap.sh [2023-08-18 15:38:23,526] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: overlap.sh [2023-08-18 15:38:23,535] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-08-18 15:38:23,538] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-08-18 15:38:23,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-08-18 15:38:23,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Peak_Counts.sh [2023-08-18 15:38:23,598] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Peak_Counts.sh [2023-08-18 15:38:23,620] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-08-18 15:38:23,624] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-08-18 15:38:23,624] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-08-18 15:38:23,630] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-08-18 15:38:23,645] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-08-18 15:38:23,689] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-08-18 15:38:23,693] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-08-18 15:38:23,700] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-08-18 15:38:23,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:38:23,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:38:23,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:38:23,792] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:38:23,793] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:38:23,793] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:38:23,793] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:38:23,793] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:38:23,793] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:38:23,793] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:38:23,793] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:38:23,794] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:38:23,803] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:38:23,812] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-08-18 15:38:23,815] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-08-18 15:38:23,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-08-18 15:38:23,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:38:23,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Chr_Peak_Counts.pdf [2023-08-18 15:38:23,960] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:38:23,960] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:38:23,961] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:38:23,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M07_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:38:23,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M08_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:38:23,963] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M05_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:38:23,964] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M06_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:38:23,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-08-18 15:38:24,229] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.1.2 [2023-08-18 15:38:24,581] multiqc.modules.macs2.macs2 [INFO ] Found 8 logs [2023-08-18 15:38:24,592] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.1.2 [2023-08-18 15:38:24,634] multiqc.modules.picard.picard [INFO ] Found 4 InsertSizeMetrics reports [2023-08-18 15:38:24,649] multiqc.modules.samtools.samtools [INFO ] Found 4 flagstat reports [2023-08-18 15:38:24,653] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M05_idxstats [2023-08-18 15:38:24,654] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M06_idxstats [2023-08-18 15:38:24,655] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M08_idxstats [2023-08-18 15:38:24,655] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M07_idxstats [2023-08-18 15:38:24,656] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M05_idxstats [2023-08-18 15:38:24,657] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M06_idxstats [2023-08-18 15:38:24,658] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M08_idxstats [2023-08-18 15:38:24,658] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M07_idxstats [2023-08-18 15:38:24,662] multiqc.modules.samtools.samtools [INFO ] Found 4 idxstats reports [2023-08-18 15:38:24,671] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G207M5_CKDL230025720-1A_HGLT2DSX7_L1_R1' [2023-08-18 15:38:24,673] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G207M8_CKDL230025720-1A_HGLT2DSX7_L1_R1' [2023-08-18 15:38:24,675] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G207M7_CKDL230025720-1A_HGLT2DSX7_L1_R1' [2023-08-18 15:38:24,679] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G207M6_CKDL230025720-1A_HGLT2DSX7_L1_R1' [2023-08-18 15:38:24,680] multiqc.modules.bowtie2.bowtie2 [INFO ] Found 5 reports [2023-08-18 15:38:26,140] multiqc.modules.fastqc.fastqc [INFO ] Found 8 reports [2023-08-18 15:38:26,441] multiqc [INFO ] Compressing plot data [2023-08-18 15:38:26,736] multiqc [INFO ] Report : G207_SG_CHIPSEQ_K9me3/multiqc_report.html [2023-08-18 15:38:26,736] multiqc [INFO ] Data : G207_SG_CHIPSEQ_K9me3/multiqc_data [2023-08-18 15:38:26,736] multiqc [DEBUG ] Moving data file from '/scratch/tmp1o_0bp7o/multiqc_data' to 'G207_SG_CHIPSEQ_K9me3/multiqc_data' [2023-08-18 15:38:26,856] multiqc [INFO ] MultiQC complete