Sample total_reads paired_total paired_aligned_none paired_aligned_one paired_aligned_multi paired_aligned_discord_one paired_aligned_mate_none paired_aligned_mate_one paired_aligned_mate_multi overall_alignment_rate paired_aligned_mate_multi_halved paired_aligned_mate_none_halved paired_aligned_mate_one_halved G207M1_CKDL230025720-1A_HGLT2DSX7_L1_R1 11560563 11560563 2001730 8860509 698324 1112084 1142264 402588 234440 95.06 117220.0 571132.0 201294.0 G207M2_CKDL230025720-1A_HGLT2DSX7_L1_R1 10963341 10963341 1759394 8302215 901732 1010104 856114 372032 270434 96.1 135217.0 428057.0 186016.0 G207M3_CKDL230025720-1A_HGLT2DSX7_L1_R1 9138424 9138424 2469423 5724987 944014 1578115 873815 415826 492975 95.22 246487.5 436907.5 207913.0 G207M4_CKDL230025720-1A_HGLT2DSX7_L1_R1 10026289 10026289 1477061 7642625 906603 813146 778961 324068 224801 96.12 112400.5 389480.5 162034.0 README_Bowtie2.sh 250000 250000 95.16