[2023-08-18 15:32:07,695] multiqc [DEBUG ] This is MultiQC v1.12 [2023-08-18 15:32:07,695] multiqc [DEBUG ] No MultiQC config found: /usr/lib/python3.8/site-packages/multiqc_config.yaml [2023-08-18 15:32:07,695] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2023-08-18 15:32:07,696] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-08-18 15:32:07,696] multiqc [DEBUG ] Command used: /usr/bin/multiqc -o G207_K27ac_MULTIQC ./G207_SG_CHIPSEQ_K27ac [2023-08-18 15:32:07,931] multiqc [WARNING] MultiQC Version v1.15 now available! [2023-08-18 15:32:07,931] multiqc [DEBUG ] Command : /usr/bin/multiqc -o G207_K27ac_MULTIQC ./G207_SG_CHIPSEQ_K27ac [2023-08-18 15:32:07,931] multiqc [DEBUG ] Working dir : /projectnb2/wax-dk/max [2023-08-18 15:32:07,932] multiqc [DEBUG ] Template : default [2023-08-18 15:32:07,932] multiqc [DEBUG ] Running Python 3.8.1 (default, Dec 26 2019, 14:42:08) [GCC 9.2.0] [2023-08-18 15:32:07,933] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2023-08-18 15:32:07,934] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp2sp9a_p2 [2023-08-18 15:32:08,075] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G207_SG_CHIPSEQ_K27ac [2023-08-18 15:32:08,407] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-08-18 15:32:08,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-08-18 15:32:08,486] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-08-18 15:32:08,498] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-08-18 15:32:08,515] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-08-18 15:32:08,523] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: copy_samples.py [2023-08-18 15:32:08,525] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: copy_samples.py [2023-08-18 15:32:08,525] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: copy_samples.py [2023-08-18 15:32:08,530] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: copy_samples.py [2023-08-18 15:32:08,542] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: copy_samples.py [2023-08-18 15:32:08,601] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-08-18 15:32:08,606] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-08-18 15:32:08,607] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-08-18 15:32:08,613] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-08-18 15:32:08,627] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-08-18 15:32:08,661] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-08-18 15:32:08,666] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-08-18 15:32:08,666] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-08-18 15:32:08,672] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-08-18 15:32:08,672] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-08-18 15:32:08,685] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-08-18 15:32:08,686] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: DNAChIPseq_pipeline.pdf [2023-08-18 15:32:08,686] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M2_CKDL230025720-1A_HGLT2DSX7_L1_R2.fastq.gz [2023-08-18 15:32:08,687] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M2_CKDL230025720-1A_HGLT2DSX7_L1_R1.fastq.gz [2023-08-18 15:32:08,705] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_sorted_mapped.bam [2023-08-18 15:32:08,705] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_alignments.bam [2023-08-18 15:32:08,706] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_sorted_mapped.bam.bai [2023-08-18 15:32:08,706] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_alignments.bam.bai [2023-08-18 15:32:08,711] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:08,713] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:08,714] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:08,718] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:08,718] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:08,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:08,718] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:08,718] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:08,718] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:08,718] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:08,718] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:08,742] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:10,001] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:10,076] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_filtered_StrgtPks.bam [2023-08-18 15:32:10,076] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_filtered_StrgtPks_sorted.bam [2023-08-18 15:32:10,076] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_StrgtPksRm_tab.bed [2023-08-18 15:32:10,076] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_filtered_StrgtPks_sorted.bam.bai [2023-08-18 15:32:10,076] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_StrgtPks_tab.bed [2023-08-18 15:32:10,076] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_filtered_StrgtPks.bam.bai [2023-08-18 15:32:10,077] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02-W400-G2400-E100-islandfiltered.bed [2023-08-18 15:32:10,101] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:10,103] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:10,104] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:10,109] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:10,109] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:10,121] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:10,124] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-08-18 15:32:10,186] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M02_read_SICER.out1 [2023-08-18 15:32:10,190] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M02_read_SICER.out1 [2023-08-18 15:32:10,191] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M02_read_SICER.out1 [2023-08-18 15:32:10,196] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M02_read_SICER.out1 [2023-08-18 15:32:10,196] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M02_read_SICER.out1 [2023-08-18 15:32:10,197] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M02_read_SICER.out1 [2023-08-18 15:32:10,197] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M02_read_SICER.out1 [2023-08-18 15:32:10,197] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M02_read_SICER.out1 [2023-08-18 15:32:10,197] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M02_read_SICER.out1 [2023-08-18 15:32:10,197] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M02_read_SICER.out1 [2023-08-18 15:32:10,197] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M02_read_SICER.out1 [2023-08-18 15:32:10,209] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M02_read_SICER.out1 [2023-08-18 15:32:10,725] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M02_read_SICER.out1 [2023-08-18 15:32:10,767] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland [2023-08-18 15:32:10,772] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland [2023-08-18 15:32:10,772] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland [2023-08-18 15:32:10,780] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland [2023-08-18 15:32:10,781] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland [2023-08-18 15:32:10,781] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland [2023-08-18 15:32:10,781] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland [2023-08-18 15:32:10,781] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland [2023-08-18 15:32:10,781] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland [2023-08-18 15:32:10,781] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland [2023-08-18 15:32:11,288] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M02-W400-G2400-E100.scoreisland [2023-08-18 15:32:11,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02-1-removed.bed [2023-08-18 15:32:11,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02-W400-G2400-E100.scoreisland_common.bed [2023-08-18 15:32:11,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02-W400-G2400-E100.scoreisland_unique.bed [2023-08-18 15:32:11,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:32:11,321] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:32:11,323] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:32:11,335] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-08-18 15:32:11,335] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-08-18 15:32:11,335] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:32:11,340] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M02_metrics [2023-08-18 15:32:11,342] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M02_metrics [2023-08-18 15:32:11,343] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M02_metrics [2023-08-18 15:32:11,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M02_metrics [2023-08-18 15:32:11,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M02_metrics [2023-08-18 15:32:11,369] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_hist.pdf [2023-08-18 15:32:11,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_broad_MACS2_peaks.broadPeak.bed [2023-08-18 15:32:11,395] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:11,397] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:11,397] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:11,401] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:11,401] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:11,407] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:11,408] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_narrow_MACS2_summits.bed [2023-08-18 15:32:11,409] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:32:11,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:11,416] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:11,416] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:11,420] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:11,420] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:11,428] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:11,436] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M02_read_MACS2_peaks.out1 [2023-08-18 15:32:11,438] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M02_read_MACS2_peaks.out1 [2023-08-18 15:32:11,438] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M02_read_MACS2_peaks.out1 [2023-08-18 15:32:11,442] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M02_read_MACS2_peaks.out1 [2023-08-18 15:32:11,442] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M02_read_MACS2_peaks.out1 [2023-08-18 15:32:11,442] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M02_read_MACS2_peaks.out1 [2023-08-18 15:32:11,442] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M02_read_MACS2_peaks.out1 [2023-08-18 15:32:11,442] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M02_read_MACS2_peaks.out1 [2023-08-18 15:32:11,442] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M02_read_MACS2_peaks.out1 [2023-08-18 15:32:11,442] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M02_read_MACS2_peaks.out1 [2023-08-18 15:32:11,443] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M02_read_MACS2_peaks.out1 [2023-08-18 15:32:11,459] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M02_read_MACS2_peaks.out1 [2023-08-18 15:32:12,330] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M02_read_MACS2_peaks.out1 [2023-08-18 15:32:12,411] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:12,416] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:12,416] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:12,424] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:12,424] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:12,424] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:12,425] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:12,425] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:12,425] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:12,425] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:12,425] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:12,447] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:13,513] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:13,608] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:13,611] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:13,611] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:13,617] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:13,617] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:13,617] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:13,617] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:13,617] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:13,617] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:13,617] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:13,618] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:13,642] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:14,584] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M02_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:14,670] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:14,675] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:14,676] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:14,681] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:14,682] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:14,682] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:14,682] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:14,682] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:14,682] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:14,682] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:14,682] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:14,701] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:15,610] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M02_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:15,661] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-18 15:32:15,661] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:32:15,661] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-18 15:32:15,661] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-18 15:32:15,666] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:32:15,668] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:32:15,680] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-18 15:32:15,681] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:32:15,693] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-08-18 15:32:15,695] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-08-18 15:32:15,695] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-08-18 15:32:15,699] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-08-18 15:32:15,715] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-08-18 15:32:15,721] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: run.sh [2023-08-18 15:32:15,723] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: run.sh [2023-08-18 15:32:15,727] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: run.sh [2023-08-18 15:32:15,745] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_compact.R [2023-08-18 15:32:15,749] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_compact.R [2023-08-18 15:32:15,768] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_detailed.R [2023-08-18 15:32:15,771] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_detailed.R [2023-08-18 15:32:15,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: process_output_detailed.R [2023-08-18 15:32:15,787] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M1_CKDL230025720-1A_HGLT2DSX7_L1_R2.fastq.gz [2023-08-18 15:32:15,787] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M1_CKDL230025720-1A_HGLT2DSX7_L1_R1.fastq.gz [2023-08-18 15:32:15,807] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_sorted_mapped.bam [2023-08-18 15:32:15,808] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_sorted_mapped.bam.bai [2023-08-18 15:32:15,808] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_alignments.bam.bai [2023-08-18 15:32:15,808] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_alignments.bam [2023-08-18 15:32:15,819] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:15,821] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:15,822] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:15,826] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:15,826] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:15,826] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:15,826] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:15,827] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:15,827] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:15,827] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:15,827] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:15,851] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:17,120] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:17,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_filtered_StrgtPks.bam [2023-08-18 15:32:17,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_StrgtPks_tab.bed [2023-08-18 15:32:17,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_filtered_StrgtPks_sorted.bam [2023-08-18 15:32:17,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_filtered_StrgtPks.bam.bai [2023-08-18 15:32:17,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_filtered_StrgtPks_sorted.bam.bai [2023-08-18 15:32:17,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_StrgtPksRm_tab.bed [2023-08-18 15:32:17,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01-W400-G2400-E100-islandfiltered.bed [2023-08-18 15:32:17,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M01_read_SICER.out1 [2023-08-18 15:32:17,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M01_read_SICER.out1 [2023-08-18 15:32:17,207] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M01_read_SICER.out1 [2023-08-18 15:32:17,211] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M01_read_SICER.out1 [2023-08-18 15:32:17,211] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M01_read_SICER.out1 [2023-08-18 15:32:17,211] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M01_read_SICER.out1 [2023-08-18 15:32:17,211] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M01_read_SICER.out1 [2023-08-18 15:32:17,211] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M01_read_SICER.out1 [2023-08-18 15:32:17,212] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M01_read_SICER.out1 [2023-08-18 15:32:17,212] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M01_read_SICER.out1 [2023-08-18 15:32:17,212] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M01_read_SICER.out1 [2023-08-18 15:32:17,221] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M01_read_SICER.out1 [2023-08-18 15:32:17,723] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M01_read_SICER.out1 [2023-08-18 15:32:17,775] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01-1-removed.bed [2023-08-18 15:32:17,775] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-08-18 15:32:17,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:17,783] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:17,783] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:17,787] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:17,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:17,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:17,799] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland [2023-08-18 15:32:17,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland [2023-08-18 15:32:17,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland [2023-08-18 15:32:17,807] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland [2023-08-18 15:32:17,807] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland [2023-08-18 15:32:17,807] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland [2023-08-18 15:32:17,807] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland [2023-08-18 15:32:17,807] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland [2023-08-18 15:32:17,807] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland [2023-08-18 15:32:17,807] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland [2023-08-18 15:32:18,286] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M01-W400-G2400-E100.scoreisland [2023-08-18 15:32:18,312] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:32:18,312] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-08-18 15:32:18,312] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01-W400-G2400-E100.scoreisland_common.bed [2023-08-18 15:32:18,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:32:18,330] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:32:18,347] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-08-18 15:32:18,347] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:32:18,347] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01-W400-G2400-E100.scoreisland_unique.bed [2023-08-18 15:32:18,348] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_hist.pdf [2023-08-18 15:32:18,353] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M01_metrics [2023-08-18 15:32:18,355] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M01_metrics [2023-08-18 15:32:18,356] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M01_metrics [2023-08-18 15:32:18,360] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M01_metrics [2023-08-18 15:32:18,375] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M01_metrics [2023-08-18 15:32:18,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:32:18,378] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_narrow_MACS2_summits.bed [2023-08-18 15:32:18,413] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M01_read_MACS2_peaks.out1 [2023-08-18 15:32:18,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M01_read_MACS2_peaks.out1 [2023-08-18 15:32:18,417] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M01_read_MACS2_peaks.out1 [2023-08-18 15:32:18,428] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M01_read_MACS2_peaks.out1 [2023-08-18 15:32:18,428] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M01_read_MACS2_peaks.out1 [2023-08-18 15:32:18,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M01_read_MACS2_peaks.out1 [2023-08-18 15:32:18,429] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M01_read_MACS2_peaks.out1 [2023-08-18 15:32:18,429] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M01_read_MACS2_peaks.out1 [2023-08-18 15:32:18,429] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M01_read_MACS2_peaks.out1 [2023-08-18 15:32:18,429] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M01_read_MACS2_peaks.out1 [2023-08-18 15:32:18,429] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M01_read_MACS2_peaks.out1 [2023-08-18 15:32:18,449] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M01_read_MACS2_peaks.out1 [2023-08-18 15:32:19,516] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M01_read_MACS2_peaks.out1 [2023-08-18 15:32:19,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_broad_MACS2_peaks.broadPeak.bed [2023-08-18 15:32:19,637] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:19,641] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:19,648] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:19,654] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:19,654] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:19,654] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:19,654] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:19,654] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:19,654] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:19,654] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:19,655] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:19,677] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:20,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:20,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:20,892] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:20,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:20,898] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:20,898] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:20,898] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:20,898] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:20,898] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:20,898] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:20,898] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:20,899] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:20,899] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:20,899] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:22,123] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:22,219] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:22,223] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:22,224] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:22,229] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:22,229] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:22,229] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:22,229] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:22,229] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:22,230] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:22,230] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:22,237] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M01_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:22,261] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:22,264] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:22,264] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:22,268] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:22,269] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:22,269] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:22,269] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:22,269] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:22,269] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:22,269] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:22,276] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:22,312] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:22,316] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:22,316] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:22,322] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:22,322] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:22,322] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:22,322] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:22,322] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:22,322] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:22,322] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:22,323] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:22,343] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:23,406] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M01_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:23,465] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:32:23,465] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-18 15:32:23,465] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-18 15:32:23,465] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-18 15:32:23,465] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-18 15:32:23,470] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:32:23,472] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:32:23,484] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:32:23,484] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M4_CKDL230025720-1A_HGLT2DSX7_L1_R2.fastq.gz [2023-08-18 15:32:23,485] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M4_CKDL230025720-1A_HGLT2DSX7_L1_R1.fastq.gz [2023-08-18 15:32:23,485] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_alignments.bam.bai [2023-08-18 15:32:23,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_alignments.bam [2023-08-18 15:32:23,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_sorted_mapped.bam [2023-08-18 15:32:23,505] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_sorted_mapped.bam.bai [2023-08-18 15:32:23,516] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:23,518] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:23,519] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:23,523] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:23,523] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:23,523] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:23,523] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:23,523] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:23,523] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:23,523] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:23,523] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:23,547] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:24,770] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:24,880] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:24,884] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:24,884] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:24,891] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:24,891] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:24,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:24,892] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:24,892] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:24,892] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:24,892] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:24,892] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:24,909] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:25,794] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:25,878] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:25,881] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:25,881] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:25,886] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:25,886] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:25,887] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:25,887] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:25,887] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:25,887] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:25,887] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:25,887] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:25,907] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:26,943] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:27,034] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:27,039] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:27,040] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:27,045] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:27,045] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:27,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:27,046] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:27,046] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:27,046] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:27,046] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:27,046] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:27,064] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:27,931] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:27,986] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:27,989] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:27,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:27,993] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:27,993] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:28,000] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M04_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:28,007] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:28,015] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:28,015] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:28,019] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:28,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:28,026] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M04_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:28,027] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_narrow_MACS2_summits.bed [2023-08-18 15:32:28,027] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_broad_MACS2_peaks.broadPeak.bed [2023-08-18 15:32:28,048] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:32:28,080] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M04_read_MACS2_peaks.out1 [2023-08-18 15:32:28,083] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M04_read_MACS2_peaks.out1 [2023-08-18 15:32:28,084] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M04_read_MACS2_peaks.out1 [2023-08-18 15:32:28,090] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M04_read_MACS2_peaks.out1 [2023-08-18 15:32:28,090] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M04_read_MACS2_peaks.out1 [2023-08-18 15:32:28,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M04_read_MACS2_peaks.out1 [2023-08-18 15:32:28,091] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M04_read_MACS2_peaks.out1 [2023-08-18 15:32:28,091] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M04_read_MACS2_peaks.out1 [2023-08-18 15:32:28,091] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M04_read_MACS2_peaks.out1 [2023-08-18 15:32:28,091] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M04_read_MACS2_peaks.out1 [2023-08-18 15:32:28,091] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M04_read_MACS2_peaks.out1 [2023-08-18 15:32:28,107] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M04_read_MACS2_peaks.out1 [2023-08-18 15:32:28,972] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M04_read_MACS2_peaks.out1 [2023-08-18 15:32:29,020] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:32:29,020] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-18 15:32:29,031] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:32:29,033] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:32:29,045] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:32:29,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-18 15:32:29,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-18 15:32:29,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-18 15:32:29,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_filtered_StrgtPks_sorted.bam [2023-08-18 15:32:29,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_filtered_StrgtPks.bam [2023-08-18 15:32:29,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_filtered_StrgtPks_sorted.bam.bai [2023-08-18 15:32:29,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_filtered_StrgtPks.bam.bai [2023-08-18 15:32:29,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_StrgtPksRm_tab.bed [2023-08-18 15:32:29,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_StrgtPks_tab.bed [2023-08-18 15:32:29,071] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04-1-removed.bed [2023-08-18 15:32:29,071] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04-W400-G2400-E100-islandfiltered.bed [2023-08-18 15:32:29,072] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-08-18 15:32:29,077] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland [2023-08-18 15:32:29,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland [2023-08-18 15:32:29,080] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland [2023-08-18 15:32:29,085] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland [2023-08-18 15:32:29,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland [2023-08-18 15:32:29,086] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland [2023-08-18 15:32:29,086] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland [2023-08-18 15:32:29,086] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland [2023-08-18 15:32:29,086] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland [2023-08-18 15:32:29,086] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland [2023-08-18 15:32:29,638] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland [2023-08-18 15:32:29,673] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M04_read_SICER.out1 [2023-08-18 15:32:29,675] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M04_read_SICER.out1 [2023-08-18 15:32:29,675] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M04_read_SICER.out1 [2023-08-18 15:32:29,679] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M04_read_SICER.out1 [2023-08-18 15:32:29,679] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M04_read_SICER.out1 [2023-08-18 15:32:29,680] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M04_read_SICER.out1 [2023-08-18 15:32:29,680] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M04_read_SICER.out1 [2023-08-18 15:32:29,680] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M04_read_SICER.out1 [2023-08-18 15:32:29,680] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M04_read_SICER.out1 [2023-08-18 15:32:29,680] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M04_read_SICER.out1 [2023-08-18 15:32:29,680] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M04_read_SICER.out1 [2023-08-18 15:32:29,691] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M04_read_SICER.out1 [2023-08-18 15:32:30,268] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M04_read_SICER.out1 [2023-08-18 15:32:30,311] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:30,313] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:30,314] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:30,318] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:30,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:30,319] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:30,319] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:30,319] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:30,319] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:30,319] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:30,325] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M04-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:30,326] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:32:30,326] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-08-18 15:32:30,331] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:32:30,336] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:32:30,354] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-08-18 15:32:30,354] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04-W400-G2400-E100.scoreisland_common.bed [2023-08-18 15:32:30,354] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:32:30,354] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04-W400-G2400-E100.scoreisland_unique.bed [2023-08-18 15:32:30,355] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_hist.pdf [2023-08-18 15:32:30,360] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M04_metrics [2023-08-18 15:32:30,362] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M04_metrics [2023-08-18 15:32:30,362] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M04_metrics [2023-08-18 15:32:30,367] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M04_metrics [2023-08-18 15:32:30,381] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M04_metrics [2023-08-18 15:32:30,439] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: index [2023-08-18 15:32:30,441] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: index [2023-08-18 15:32:30,441] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: index [2023-08-18 15:32:30,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: index [2023-08-18 15:32:30,451] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: index [2023-08-18 15:32:30,496] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: COMMIT_EDITMSG [2023-08-18 15:32:30,498] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: COMMIT_EDITMSG [2023-08-18 15:32:30,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-08-18 15:32:30,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-08-18 15:32:30,606] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-08-18 15:32:30,622] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-commit.sample [2023-08-18 15:32:30,624] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-commit.sample [2023-08-18 15:32:30,650] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: update.sample [2023-08-18 15:32:30,652] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: update.sample [2023-08-18 15:32:30,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: update.sample [2023-08-18 15:32:30,691] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-push.sample [2023-08-18 15:32:30,694] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-push.sample [2023-08-18 15:32:30,755] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-rebase.sample [2023-08-18 15:32:30,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pre-rebase.sample [2023-08-18 15:32:30,759] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-rebase.sample [2023-08-18 15:32:30,765] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pre-rebase.sample [2023-08-18 15:32:30,776] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pre-rebase.sample [2023-08-18 15:32:30,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: prepare-commit-msg.sample [2023-08-18 15:32:30,784] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: prepare-commit-msg.sample [2023-08-18 15:32:30,933] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: e0860c9bddaa1426469d2c9f88402aaf24ae9c [2023-08-18 15:32:30,936] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: e0860c9bddaa1426469d2c9f88402aaf24ae9c [2023-08-18 15:32:30,940] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: e0860c9bddaa1426469d2c9f88402aaf24ae9c [2023-08-18 15:32:31,029] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.idx [2023-08-18 15:32:31,032] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.idx [2023-08-18 15:32:31,032] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.idx [2023-08-18 15:32:31,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.idx [2023-08-18 15:32:31,050] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.idx [2023-08-18 15:32:31,067] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.pack [2023-08-18 15:32:31,070] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.pack [2023-08-18 15:32:31,071] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.pack [2023-08-18 15:32:31,075] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.pack [2023-08-18 15:32:31,075] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.pack [2023-08-18 15:32:31,075] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.pack [2023-08-18 15:32:31,075] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.pack [2023-08-18 15:32:31,075] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.pack [2023-08-18 15:32:31,075] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.pack [2023-08-18 15:32:31,076] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.pack [2023-08-18 15:32:31,076] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.pack [2023-08-18 15:32:31,076] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.pack [2023-08-18 15:32:31,076] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.pack [2023-08-18 15:32:31,084] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pack-ddb2d76b80b137f508f16dc262ee772418d62bf2.pack [2023-08-18 15:32:31,096] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 4805d0931570cb8c3590da8e37fb0b85bb5374 [2023-08-18 15:32:31,100] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 4805d0931570cb8c3590da8e37fb0b85bb5374 [2023-08-18 15:32:31,105] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 4805d0931570cb8c3590da8e37fb0b85bb5374 [2023-08-18 15:32:31,210] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_diffReps.sh [2023-08-18 15:32:31,213] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_diffReps.sh [2023-08-18 15:32:31,213] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_diffReps.sh [2023-08-18 15:32:31,218] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_diffReps.sh [2023-08-18 15:32:31,226] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_diffReps.sh [2023-08-18 15:32:31,329] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:31,331] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search 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15:32:32,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Female_Control_diffReps_1.peak_filtered.bed [2023-08-18 15:32:32,957] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Male_Treatment_diffReps_1_annotated.txt [2023-08-18 15:32:32,960] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Male_Treatment_diffReps_1_annotated.txt [2023-08-18 15:32:32,961] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Male_Treatment_diffReps_1_annotated.txt [2023-08-18 15:32:32,966] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Male_Treatment_diffReps_1_annotated.txt [2023-08-18 15:32:32,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Male_Treatment_diffReps_1_annotated.txt [2023-08-18 15:32:33,000] multiqc [DEBUG ] File ignored by 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exceeded search pattern filesize limit: Female_Control_diffReps_1_annotated.txt [2023-08-18 15:32:33,117] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_Peaks_UCSC.bed [2023-08-18 15:32:33,146] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Female_Control_diffReps_1_screenshot.txt [2023-08-18 15:32:33,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Female_Control_diffReps_1_screenshot.txt [2023-08-18 15:32:33,151] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Female_Control_diffReps_1_screenshot.txt [2023-08-18 15:32:33,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Female_Control_diffReps_1_screenshot.txt [2023-08-18 15:32:33,169] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 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multiqc [DEBUG ] Ignoring file as matched an ignore pattern: BG_Sites_diffReps_1.bed [2023-08-18 15:32:33,214] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Male_Treatment_diffReps_Top_600.peak_filtered.bed [2023-08-18 15:32:33,214] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Male_Treatment_diffReps_Top_200.peak_filtered.bed [2023-08-18 15:32:33,214] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_FDR_Barchart.pdf [2023-08-18 15:32:33,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_1_Histogram.pdf [2023-08-18 15:32:33,242] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Male_Treatment_diffReps_1.bed [2023-08-18 15:32:33,242] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Female_Control_diffReps_1.bed [2023-08-18 15:32:33,290] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Male_Treatment_diffReps_1_annotated.txt [2023-08-18 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lima/summary because it exceeded search pattern filesize limit: Step_05_G207_K27ac_G207M01.o43727 [2023-08-18 15:32:37,005] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G207_K27ac_G207M01.o43727 [2023-08-18 15:32:37,029] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_05_G207_K27ac_G207M02.o43728 [2023-08-18 15:32:37,031] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_05_G207_K27ac_G207M02.o43728 [2023-08-18 15:32:37,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G207_K27ac_G207M02.o43728 [2023-08-18 15:32:37,049] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_05_G207_K27ac_G207M04.o43730 [2023-08-18 15:32:37,052] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_05_G207_K27ac_G207M04.o43730 [2023-08-18 15:32:37,056] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G207_K27ac_G207M04.o43730 [2023-08-18 15:32:37,080] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: BAM_Count.qsub [2023-08-18 15:32:37,082] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: BAM_Count.qsub [2023-08-18 15:32:37,082] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: BAM_Count.qsub [2023-08-18 15:32:37,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: BAM_Count.qsub [2023-08-18 15:32:37,101] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: BAM_Count.qsub [2023-08-18 15:32:37,147] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:37,150] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:37,155] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:37,170] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:37,172] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:37,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:37,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:37,185] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:37,191] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_05_G207_K27ac_G207M03.o43729 [2023-08-18 15:32:37,194] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_05_G207_K27ac_G207M03.o43729 [2023-08-18 15:32:37,198] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_05_G207_K27ac_G207M03.o43729 [2023-08-18 15:32:37,226] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_BAM_Count.sh [2023-08-18 15:32:37,228] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_BAM_Count.sh [2023-08-18 15:32:37,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_BAM_Count.sh [2023-08-18 15:32:37,246] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Read_Counts.sh [2023-08-18 15:32:37,249] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Read_Counts.sh [2023-08-18 15:32:37,265] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Read_Counts.R [2023-08-18 15:32:37,267] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Chr_Read_Counts.R [2023-08-18 15:32:37,267] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Read_Counts.R [2023-08-18 15:32:37,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Chr_Read_Counts.R [2023-08-18 15:32:37,283] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Chr_Read_Counts.R [2023-08-18 15:32:37,412] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Chr_Read_Counts.pdf [2023-08-18 15:32:37,515] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 02_Review_Pipeline_Parameters.sh [2023-08-18 15:32:37,518] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 02_Review_Pipeline_Parameters.sh [2023-08-18 15:32:37,518] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 02_Review_Pipeline_Parameters.sh [2023-08-18 15:32:37,524] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 02_Review_Pipeline_Parameters.sh [2023-08-18 15:32:37,540] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 02_Review_Pipeline_Parameters.sh [2023-08-18 15:32:37,545] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2023-08-18 15:32:37,548] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2023-08-18 15:32:37,548] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2023-08-18 15:32:37,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2023-08-18 15:32:37,565] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2023-08-18 15:32:37,592] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207.ods [2023-08-18 15:32:37,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207.ods [2023-08-18 15:32:37,597] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207.ods [2023-08-18 15:32:37,606] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207.ods [2023-08-18 15:32:37,613] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207.ods [2023-08-18 15:32:37,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2023-08-18 15:32:37,644] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2023-08-18 15:32:37,645] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2023-08-18 15:32:37,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2023-08-18 15:32:37,670] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2023-08-18 15:32:37,678] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-08-18 15:32:37,680] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-08-18 15:32:37,681] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-08-18 15:32:37,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-08-18 15:32:37,699] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2023-08-18 15:32:37,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Pipeline_Runtime.txt [2023-08-18 15:32:37,725] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Pipeline_Runtime.txt [2023-08-18 15:32:37,750] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:37,752] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:37,753] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:37,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:37,769] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:37,776] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2023-08-18 15:32:37,778] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2023-08-18 15:32:37,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2023-08-18 15:32:37,796] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G207_K27ac_G207M02.o44619 [2023-08-18 15:32:37,798] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G207_K27ac_G207M02.o44619 [2023-08-18 15:32:37,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G207_K27ac_G207M02.o44619 [2023-08-18 15:32:37,816] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G207_K27ac_G207M04.o44621 [2023-08-18 15:32:37,818] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G207_K27ac_G207M04.o44621 [2023-08-18 15:32:37,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G207_K27ac_G207M04.o44621 [2023-08-18 15:32:37,859] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-08-18 15:32:37,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-08-18 15:32:37,862] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-08-18 15:32:37,866] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-08-18 15:32:37,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-08-18 15:32:37,894] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:37,896] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:37,901] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:37,919] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G207_K27ac_G207M03.o44620 [2023-08-18 15:32:37,922] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G207_K27ac_G207M03.o44620 [2023-08-18 15:32:37,926] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G207_K27ac_G207M03.o44620 [2023-08-18 15:32:37,940] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:37,943] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:37,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:37,967] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G207_K27ac_G207M01.o44618 [2023-08-18 15:32:37,970] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G207_K27ac_G207M01.o44618 [2023-08-18 15:32:37,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G207_K27ac_G207M01.o44618 [2023-08-18 15:32:38,046] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-08-18 15:32:38,050] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-08-18 15:32:38,051] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-08-18 15:32:38,062] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-08-18 15:32:38,086] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-08-18 15:32:38,128] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:38,131] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:38,131] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:38,135] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:38,135] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:38,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:38,135] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:38,135] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:38,135] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:38,135] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:38,135] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:38,158] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:39,378] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M04_read_Peak_Union.out1 [2023-08-18 15:32:39,458] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:39,460] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:39,460] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:39,464] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:39,464] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:39,465] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:39,465] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:39,465] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:39,465] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:39,465] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:39,465] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:39,489] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:40,715] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:40,794] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:40,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:40,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:40,800] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:40,800] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:40,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:40,801] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:40,801] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:40,801] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:40,801] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:40,801] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:40,824] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:42,034] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M01_read_Peak_Union.out1 [2023-08-18 15:32:42,111] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:42,113] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:42,113] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:42,117] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:42,118] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:42,118] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:42,118] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:42,118] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:42,118] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:42,118] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:42,118] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:42,142] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:43,370] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M02_read_Peak_Union.out1 [2023-08-18 15:32:43,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-08-18 15:32:43,449] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:43,451] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:43,452] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:43,456] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:43,466] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:43,481] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M03.o44409 [2023-08-18 15:32:43,486] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M03.o44409 [2023-08-18 15:32:43,486] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M03.o44409 [2023-08-18 15:32:43,494] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M03.o44409 [2023-08-18 15:32:43,505] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M03.o44409 [2023-08-18 15:32:43,523] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M02.o44408 [2023-08-18 15:32:43,527] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M02.o44408 [2023-08-18 15:32:43,527] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M02.o44408 [2023-08-18 15:32:43,534] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M02.o44408 [2023-08-18 15:32:43,543] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M02.o44408 [2023-08-18 15:32:43,559] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M04.o44410 [2023-08-18 15:32:43,562] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M04.o44410 [2023-08-18 15:32:43,562] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M04.o44410 [2023-08-18 15:32:43,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M04.o44410 [2023-08-18 15:32:43,577] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M04.o44410 [2023-08-18 15:32:43,604] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:43,607] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:43,611] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:43,632] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-08-18 15:32:43,634] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-08-18 15:32:43,638] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-08-18 15:32:43,653] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-08-18 15:32:43,656] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-08-18 15:32:43,657] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-08-18 15:32:43,662] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-08-18 15:32:43,677] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-08-18 15:32:43,683] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:43,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:43,685] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:43,691] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:43,702] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:43,732] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M01.o44407 [2023-08-18 15:32:43,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M01.o44407 [2023-08-18 15:32:43,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M01.o44407 [2023-08-18 15:32:43,744] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M01.o44407 [2023-08-18 15:32:43,755] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G207_K27ac_G207M01.o44407 [2023-08-18 15:32:43,773] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2023-08-18 15:32:43,778] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:43,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:43,780] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:43,784] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:43,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:43,841] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M03.o43830 [2023-08-18 15:32:43,846] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M03.o43830 [2023-08-18 15:32:43,846] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M03.o43830 [2023-08-18 15:32:43,852] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M03.o43830 [2023-08-18 15:32:43,862] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M03.o43830 [2023-08-18 15:32:43,884] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-08-18 15:32:43,886] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-08-18 15:32:43,886] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-08-18 15:32:43,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-08-18 15:32:43,907] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-08-18 15:32:43,930] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:43,932] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:43,942] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:43,970] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:43,972] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:43,973] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:43,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:43,987] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:44,009] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M01.o43828 [2023-08-18 15:32:44,014] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M01.o43828 [2023-08-18 15:32:44,014] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M01.o43828 [2023-08-18 15:32:44,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M01.o43828 [2023-08-18 15:32:44,032] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M01.o43828 [2023-08-18 15:32:44,083] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M02.o43829 [2023-08-18 15:32:44,085] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M02.o43829 [2023-08-18 15:32:44,086] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M02.o43829 [2023-08-18 15:32:44,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M02.o43829 [2023-08-18 15:32:44,100] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M02.o43829 [2023-08-18 15:32:44,123] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M04.o43831 [2023-08-18 15:32:44,125] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M04.o43831 [2023-08-18 15:32:44,125] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M04.o43831 [2023-08-18 15:32:44,130] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M04.o43831 [2023-08-18 15:32:44,140] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G207_K27ac_G207M04.o43831 [2023-08-18 15:32:44,145] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_RmStraightPk.sh [2023-08-18 15:32:44,147] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_RmStraightPk.sh [2023-08-18 15:32:44,158] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_RmStraightPk.sh [2023-08-18 15:32:44,182] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: remove_straight_peaks.py [2023-08-18 15:32:44,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: remove_straight_peaks.py [2023-08-18 15:32:44,185] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: remove_straight_peaks.py [2023-08-18 15:32:44,190] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: remove_straight_peaks.py [2023-08-18 15:32:44,200] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: remove_straight_peaks.py [2023-08-18 15:32:44,206] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: remove_straight_peaks.sh [2023-08-18 15:32:44,209] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: remove_straight_peaks.sh [2023-08-18 15:32:44,213] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: remove_straight_peaks.sh [2023-08-18 15:32:44,387] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:44,389] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:44,390] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:44,394] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:44,403] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-08-18 15:32:44,408] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_normbigWig.sh [2023-08-18 15:32:44,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_normbigWig.sh [2023-08-18 15:32:44,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_normbigWig.sh [2023-08-18 15:32:44,434] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M04.o44638 [2023-08-18 15:32:44,436] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M04.o44638 [2023-08-18 15:32:44,436] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M04.o44638 [2023-08-18 15:32:44,441] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M04.o44638 [2023-08-18 15:32:44,451] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M04.o44638 [2023-08-18 15:32:44,476] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M03.o44637 [2023-08-18 15:32:44,480] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M03.o44637 [2023-08-18 15:32:44,481] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M03.o44637 [2023-08-18 15:32:44,487] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M03.o44637 [2023-08-18 15:32:44,499] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M03.o44637 [2023-08-18 15:32:44,505] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:44,507] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:44,511] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-08-18 15:32:44,547] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M02.o44636 [2023-08-18 15:32:44,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M02.o44636 [2023-08-18 15:32:44,552] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M02.o44636 [2023-08-18 15:32:44,558] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M02.o44636 [2023-08-18 15:32:44,583] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M02.o44636 [2023-08-18 15:32:44,602] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M01.o44635 [2023-08-18 15:32:44,605] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M01.o44635 [2023-08-18 15:32:44,606] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M01.o44635 [2023-08-18 15:32:44,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M01.o44635 [2023-08-18 15:32:44,622] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G207_K27ac_G207M01.o44635 [2023-08-18 15:32:44,628] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:44,630] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:44,630] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:44,634] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:44,642] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-08-18 15:32:44,648] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: normbigWig.qsub [2023-08-18 15:32:44,650] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: normbigWig.qsub [2023-08-18 15:32:44,650] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: normbigWig.qsub [2023-08-18 15:32:44,655] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: normbigWig.qsub [2023-08-18 15:32:44,668] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: normbigWig.qsub [2023-08-18 15:32:44,697] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: BAM_to_WIG.sh [2023-08-18 15:32:44,702] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: BAM_to_WIG.sh [2023-08-18 15:32:44,702] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: BAM_to_WIG.sh [2023-08-18 15:32:44,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: BAM_to_WIG.sh [2023-08-18 15:32:44,721] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: BAM_to_WIG.sh [2023-08-18 15:32:44,777] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bigWigToWig [2023-08-18 15:32:44,781] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bigWigToWig [2023-08-18 15:32:44,781] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bigWigToWig [2023-08-18 15:32:44,793] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: bigWigToWig [2023-08-18 15:32:44,793] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bigWigToWig [2023-08-18 15:32:44,800] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bigWigToWig [2023-08-18 15:32:44,837] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bedGraphToBigWig 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[2023-08-18 15:32:47,047] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-08-18 15:32:47,050] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-08-18 15:32:47,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-08-18 15:32:47,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02-W400-G2400-E100.scoreisland.bed [2023-08-18 15:32:47,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Chr_Peak_Counts.pdf [2023-08-18 15:32:47,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04-W400-G2400-E100.scoreisland.bed [2023-08-18 15:32:47,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01-W400-G2400-E100.scoreisland.bed [2023-08-18 15:32:47,157] multiqc [DEBUG ] Ignoring file as 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limit: Chr_Peak_Counts.R [2023-08-18 15:32:47,881] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-08-18 15:32:47,889] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-08-18 15:32:47,904] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-08-18 15:32:47,930] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-08-18 15:32:47,932] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-08-18 15:32:47,940] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-08-18 15:32:48,022] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:32:48,027] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:32:48,027] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:32:48,032] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:32:48,032] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:32:48,033] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:32:48,033] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:32:48,033] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:32:48,033] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:32:48,033] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:32:48,033] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:32:48,033] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:32:48,040] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bedToBigBed [2023-08-18 15:32:48,046] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-08-18 15:32:48,050] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-08-18 15:32:48,059] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-08-18 15:32:48,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:32:48,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:32:48,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Chr_Peak_Counts.pdf [2023-08-18 15:32:48,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:32:48,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:32:48,168] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:32:48,168] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M01_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:32:48,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M02_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:32:48,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M04_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:32:48,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-08-18 15:32:48,174] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M3_CKDL230025720-1A_HGLT2DSX7_L1_R1.fastq.gz [2023-08-18 15:32:48,177] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M3_CKDL230025720-1A_HGLT2DSX7_L1_R2.fastq.gz [2023-08-18 15:32:48,203] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_sorted_mapped.bam [2023-08-18 15:32:48,204] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_sorted_mapped.bam.bai [2023-08-18 15:32:48,204] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_alignments.bam [2023-08-18 15:32:48,205] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_alignments.bam.bai [2023-08-18 15:32:48,210] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:48,212] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:48,212] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:48,216] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:48,216] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:48,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:48,216] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:48,216] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:48,216] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:48,216] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:48,216] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:48,240] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:49,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M03_read_Peak_Union.out1 [2023-08-18 15:32:49,535] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_StrgtPksRm_tab.bed [2023-08-18 15:32:49,535] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_StrgtPks_tab.bed [2023-08-18 15:32:49,535] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_filtered_StrgtPks.bam.bai [2023-08-18 15:32:49,535] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_filtered_StrgtPks.bam [2023-08-18 15:32:49,535] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_filtered_StrgtPks_sorted.bam [2023-08-18 15:32:49,535] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_filtered_StrgtPks_sorted.bam.bai [2023-08-18 15:32:49,590] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M03_read_MACS2_peaks.out1 [2023-08-18 15:32:49,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M03_read_MACS2_peaks.out1 [2023-08-18 15:32:49,600] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M03_read_MACS2_peaks.out1 [2023-08-18 15:32:49,606] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M03_read_MACS2_peaks.out1 [2023-08-18 15:32:49,606] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M03_read_MACS2_peaks.out1 [2023-08-18 15:32:49,606] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M03_read_MACS2_peaks.out1 [2023-08-18 15:32:49,606] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M03_read_MACS2_peaks.out1 [2023-08-18 15:32:49,606] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M03_read_MACS2_peaks.out1 [2023-08-18 15:32:49,606] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M03_read_MACS2_peaks.out1 [2023-08-18 15:32:49,606] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M03_read_MACS2_peaks.out1 [2023-08-18 15:32:49,606] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M03_read_MACS2_peaks.out1 [2023-08-18 15:32:49,619] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M03_read_MACS2_peaks.out1 [2023-08-18 15:32:50,126] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M03_read_MACS2_peaks.out1 [2023-08-18 15:32:50,195] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:50,199] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:50,199] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:50,205] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:50,205] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:50,205] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:50,205] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:50,205] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:50,205] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:50,205] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:50,205] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:50,216] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:50,736] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak [2023-08-18 15:32:50,772] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_narrow_MACS2_peaks.narrowPeak.bed [2023-08-18 15:32:50,802] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:50,806] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:50,806] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:50,811] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:50,811] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:50,812] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:50,812] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:50,812] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:50,812] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:50,812] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:50,812] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:50,828] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:51,630] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.gappedPeak [2023-08-18 15:32:51,679] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:51,681] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:51,682] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:51,686] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:51,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:51,692] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak.bb [2023-08-18 15:32:51,694] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_narrow_MACS2_summits.bed [2023-08-18 15:32:51,749] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:51,753] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:51,753] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:51,759] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:51,759] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:51,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:51,759] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:51,759] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:51,760] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:51,760] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:51,760] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:51,774] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:52,483] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M03_broad_MACS2_peaks.broadPeak [2023-08-18 15:32:52,547] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_broad_MACS2_peaks.broadPeak.bed [2023-08-18 15:32:52,552] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:52,555] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:52,555] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:52,559] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:52,559] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:52,565] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M03_narrow_MACS2_peaks.narrowPeak.bb [2023-08-18 15:32:52,566] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:32:52,570] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:32:52,572] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:32:52,584] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-08-18 15:32:52,584] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-08-18 15:32:52,585] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:32:52,585] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-08-18 15:32:52,585] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_narrow_MACS2_peaks.narrowPeak_common.bed [2023-08-18 15:32:52,586] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03_hist.pdf [2023-08-18 15:32:52,591] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M03_metrics [2023-08-18 15:32:52,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M03_metrics [2023-08-18 15:32:52,593] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M03_metrics [2023-08-18 15:32:52,597] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M03_metrics [2023-08-18 15:32:52,613] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M03_metrics [2023-08-18 15:32:52,614] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03-W400-G2400-E100-islandfiltered.bed [2023-08-18 15:32:52,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M03_read_SICER.out1 [2023-08-18 15:32:52,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M03_read_SICER.out1 [2023-08-18 15:32:52,662] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M03_read_SICER.out1 [2023-08-18 15:32:52,667] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M03_read_SICER.out1 [2023-08-18 15:32:52,667] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M03_read_SICER.out1 [2023-08-18 15:32:52,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M03_read_SICER.out1 [2023-08-18 15:32:52,667] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M03_read_SICER.out1 [2023-08-18 15:32:52,667] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M03_read_SICER.out1 [2023-08-18 15:32:52,667] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M03_read_SICER.out1 [2023-08-18 15:32:52,667] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M03_read_SICER.out1 [2023-08-18 15:32:52,667] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M03_read_SICER.out1 [2023-08-18 15:32:52,678] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M03_read_SICER.out1 [2023-08-18 15:32:53,149] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M03_read_SICER.out1 [2023-08-18 15:32:53,199] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:53,201] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:53,201] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:53,205] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:53,205] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:53,211] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland.bb [2023-08-18 15:32:53,212] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-08-18 15:32:53,256] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:32:53,259] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:32:53,260] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:32:53,266] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:32:53,266] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:32:53,266] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:32:53,266] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:32:53,266] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:32:53,266] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:32:53,266] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:32:53,266] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:32:53,267] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:32:53,267] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:33:05,459] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-08-18 15:33:06,200] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03-1-removed.bed [2023-08-18 15:33:06,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland [2023-08-18 15:33:06,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland [2023-08-18 15:33:06,208] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland [2023-08-18 15:33:06,211] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland [2023-08-18 15:33:06,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland [2023-08-18 15:33:06,212] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland [2023-08-18 15:33:06,212] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland [2023-08-18 15:33:06,212] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland [2023-08-18 15:33:06,212] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland [2023-08-18 15:33:06,212] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland [2023-08-18 15:33:06,651] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G207M03-W400-G2400-E100.scoreisland [2023-08-18 15:33:06,682] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-08-18 15:33:06,687] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:33:06,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-08-18 15:33:06,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03-W400-G2400-E100.scoreisland_unique.bed [2023-08-18 15:33:06,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-08-18 15:33:06,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-08-18 15:33:06,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-08-18 15:33:06,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G207M03-W400-G2400-E100.scoreisland_common.bed [2023-08-18 15:33:07,058] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.1.2 [2023-08-18 15:33:07,437] multiqc.modules.macs2.macs2 [INFO ] Found 8 logs [2023-08-18 15:33:07,445] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.1.2 [2023-08-18 15:33:07,476] multiqc.modules.picard.picard [INFO ] Found 4 InsertSizeMetrics reports [2023-08-18 15:33:07,489] multiqc.modules.samtools.samtools [INFO ] Found 4 flagstat reports [2023-08-18 15:33:07,491] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M01_idxstats [2023-08-18 15:33:07,491] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M02_idxstats [2023-08-18 15:33:07,491] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M04_idxstats [2023-08-18 15:33:07,492] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M03_idxstats [2023-08-18 15:33:07,492] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M01_idxstats [2023-08-18 15:33:07,492] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M02_idxstats [2023-08-18 15:33:07,493] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M04_idxstats [2023-08-18 15:33:07,493] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G207M03_idxstats [2023-08-18 15:33:07,497] multiqc.modules.samtools.samtools [INFO ] Found 4 idxstats reports [2023-08-18 15:33:07,505] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G207M2_CKDL230025720-1A_HGLT2DSX7_L1_R1' [2023-08-18 15:33:07,509] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G207M4_CKDL230025720-1A_HGLT2DSX7_L1_R1' [2023-08-18 15:33:07,510] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G207M3_CKDL230025720-1A_HGLT2DSX7_L1_R1' [2023-08-18 15:33:07,511] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G207M1_CKDL230025720-1A_HGLT2DSX7_L1_R1' [2023-08-18 15:33:07,512] multiqc.modules.bowtie2.bowtie2 [INFO ] Found 5 reports [2023-08-18 15:33:09,053] multiqc.modules.fastqc.fastqc [INFO ] Found 8 reports [2023-08-18 15:33:09,378] multiqc [INFO ] Compressing plot data [2023-08-18 15:33:09,706] multiqc [INFO ] Report : G207_K27ac_MULTIQC/multiqc_report.html [2023-08-18 15:33:09,706] multiqc [INFO ] Data : G207_K27ac_MULTIQC/multiqc_data [2023-08-18 15:33:09,706] multiqc [DEBUG ] Moving data file from '/scratch/tmp2sp9a_p2/multiqc_data' to 'G207_K27ac_MULTIQC/multiqc_data' [2023-08-18 15:33:09,872] multiqc [INFO ] MultiQC complete