Sample FastQC_mqc-generalstats-fastqc-percent_duplicates FastQC_mqc-generalstats-fastqc-percent_gc FastQC_mqc-generalstats-fastqc-avg_sequence_length FastQC_mqc-generalstats-fastqc-percent_fails FastQC_mqc-generalstats-fastqc-total_sequences STAR_mqc-generalstats-star-uniquely_mapped_percent STAR_mqc-generalstats-star-uniquely_mapped Picard_mqc-generalstats-picard-PCT_RIBOSOMAL_BASES Picard_mqc-generalstats-picard-PCT_MRNA_BASES Picard_mqc-generalstats-picard-summed_median Picard_mqc-generalstats-picard-summed_mean featureCounts_mqc-generalstats-featurecounts-percent_assigned featureCounts_mqc-generalstats-featurecounts-Assigned Samtools_mqc-generalstats-samtools-flagstat_total Samtools_mqc-generalstats-samtools-mapped_passed G186_M10_CKDL200158629-1a-DY0088-AK1543_HC2WKBBXX_L4_1 51.26007497404242 48.0 150.0 18.181818181818183 20596376.0 G186_M10_CKDL200158629-1a-DY0088-AK1543_HC2WKBBXX_L4_2 49.369211960458244 48.0 150.0 18.181818181818183 20596376.0 G186_M10_G186_M10 83.54 17205303.0 G186_M10_primary_unique 0.5685 67.0069 220 297.110815 G186_M10_sorted 93.29480567706364 16051654 G186_M10_statistics_for_all_accepted_reads 39306422 39306422 G186_M10_statistics_for_primary_reads 36005560 36005560 G186_M10_statistics_for_primary_unique_reads 34410606 34410606 G186_M11_CKDL200158629-1a-DY0088-AK1544_HC2WKBBXX_L4_1 51.99907700864763 48.0 150.0 18.181818181818183 21424035.0 G186_M11_CKDL200158629-1a-DY0088-AK1544_HC2WKBBXX_L4_2 50.97431481703498 48.0 150.0 27.27272727272727 21424035.0 G186_M11_G186_M11 80.95 17342133.0 G186_M11_primary_unique 0.3088 70.0347 216 316.627899 G186_M11_sorted 93.63611154406439 16238499 G186_M11_statistics_for_all_accepted_reads 39442570 39442570 G186_M11_statistics_for_primary_reads 36275942 36275942 G186_M11_statistics_for_primary_unique_reads 34684266 34684266 G186_M12_CKDL200158629-1a-DY0088-AK1545_HC2WKBBXX_L4_1 49.575787964503974 48.0 150.0 9.090909090909092 16854241.0 G186_M12_CKDL200158629-1a-DY0088-AK1545_HC2WKBBXX_L4_2 48.4181002392464 48.0 150.0 18.181818181818183 16854241.0 G186_M12_G186_M12 83.73 14112471.0 G186_M12_primary_unique 0.6338 69.89699999999999 229 337.022705 G186_M12_sorted 93.2358266670663 13157879 G186_M12_statistics_for_all_accepted_reads 32001226 32001226 G186_M12_statistics_for_primary_reads 29501376 29501376 G186_M12_statistics_for_primary_unique_reads 28224942 28224942 G186_M13_CKDL200158629-1a-D709-AK1780_HC2WKBBXX_L4_1 49.082426476107614 48.0 150.0 9.090909090909092 16658423.0 G186_M13_CKDL200158629-1a-D709-AK1780_HC2WKBBXX_L4_2 48.20931169049665 49.0 150.0 18.181818181818183 16658423.0 G186_M13_G186_M13 84.62 14096485.0 G186_M13_primary_unique 0.5889 69.07 231 342.40908200000007 G186_M13_sorted 93.58266972227473 13191867 G186_M13_statistics_for_all_accepted_reads 32103380 32103380 G186_M13_statistics_for_primary_reads 29513988 29513988 G186_M13_statistics_for_primary_unique_reads 28192970 28192970 G186_M14_CKDL200158629-1a-D704-AK1543_HC2WKBBXX_L4_1 47.288348969654216 49.0 150.0 9.090909090909092 18540483.0 G186_M14_CKDL200158629-1a-D704-AK1543_HC2WKBBXX_L4_2 46.10183219067135 49.0 150.0 18.181818181818183 18540483.0 G186_M14_G186_M14 84.44 15656223.0 G186_M14_primary_unique 0.38930000000000003 65.55879999999999 209 279.001206 G186_M14_sorted 93.6154716242864 14656647 G186_M14_statistics_for_all_accepted_reads 35100802 35100802 G186_M14_statistics_for_primary_reads 32555128 32555128 G186_M14_statistics_for_primary_unique_reads 31312446 31312446 G186_M15_CKDL200158629-1a-D704-AK1544_HC2WKBBXX_L4_1 47.171652376804516 49.0 150.0 9.090909090909092 19691733.0 G186_M15_CKDL200158629-1a-D704-AK1544_HC2WKBBXX_L4_2 45.92220750275654 49.0 150.0 18.181818181818183 19691733.0 G186_M15_G186_M15 79.2 15595658.0 G186_M15_primary_unique 0.3048 63.65690000000001 201 267.980695 G186_M15_sorted 93.50424970847655 14582603 G186_M15_statistics_for_all_accepted_reads 35617128 35617128 G186_M15_statistics_for_primary_reads 32563712 32563712 G186_M15_statistics_for_primary_unique_reads 31191316 31191316 G186_M16_CKDL200158629-1a-D709-AK1545_HC2WKBBXX_L4_1 51.36573559581618 48.0 150.0 18.181818181818183 18144615.0 G186_M16_CKDL200158629-1a-D709-AK1545_HC2WKBBXX_L4_2 50.864910439895645 49.0 150.0 18.181818181818183 18144615.0 G186_M16_G186_M16 83.47 15144641.0 G186_M16_primary_unique 0.8681 70.7306 231 358.333353 G186_M16_sorted 93.35154923777989 14137757 G186_M16_statistics_for_all_accepted_reads 34322836 34322836 G186_M16_statistics_for_primary_reads 31674562 31674562 G186_M16_statistics_for_primary_unique_reads 30289282 30289282 G186_M17_CKDL200158629-1a-D710-AK1680_HC2WKBBXX_L4_1 50.997067625007666 48.0 150.0 18.181818181818183 21543351.0 G186_M17_CKDL200158629-1a-D710-AK1680_HC2WKBBXX_L4_2 49.2354156077483 48.0 150.0 18.181818181818183 21543351.0 G186_M17_G186_M17 82.39 17748921.0 G186_M17_primary_unique 0.4418 67.0883 220 317.075913 G186_M17_sorted 93.3703800924011 16572235 G186_M17_statistics_for_all_accepted_reads 40304284 40304284 G186_M17_statistics_for_primary_reads 37076140 37076140 G186_M17_statistics_for_primary_unique_reads 35497842 35497842 G186_M18_CKDL200158629-1a-D705-AK1681_HC2WKBBXX_L4_1 50.118509608279524 48.0 150.0 18.181818181818183 22444119.0 G186_M18_CKDL200158629-1a-D705-AK1681_HC2WKBBXX_L4_2 47.8321458859275 49.0 150.0 18.181818181818183 22444119.0 G186_M18_G186_M18 82.8 18583603.0 G186_M18_primary_unique 0.2673 68.0917 211 293.470199 G186_M18_sorted 93.74674006972707 17421522 G186_M18_statistics_for_all_accepted_reads 41103922 41103922 G186_M18_statistics_for_primary_reads 38480522 38480522 G186_M18_statistics_for_primary_unique_reads 37167206 37167206 G186_M19_CKDL200158629-1a-D705-AK1682_HC2WKBBXX_L4_1 55.94130711703523 49.0 150.0 18.181818181818183 19488047.0 G186_M19_CKDL200158629-1a-D705-AK1682_HC2WKBBXX_L4_2 53.46001570645104 49.0 150.0 18.181818181818183 19488047.0 G186_M19_G186_M19 83.5 16272198.0 G186_M19_primary_unique 0.4245 74.4916 223 361.823859 G186_M19_sorted 93.94426616490286 15286797 G186_M19_statistics_for_all_accepted_reads 36746330 36746330 G186_M19_statistics_for_primary_reads 33953434 33953434 G186_M19_statistics_for_primary_unique_reads 32544396 32544396 G186_M1_CKDL200158629-1a-D701-AK1780_HC2WKBBXX_L4_1 47.974549886266516 50.0 150.0 9.090909090909092 16811869.0 G186_M1_CKDL200158629-1a-D701-AK1780_HC2WKBBXX_L4_2 46.25341556708832 51.0 150.0 18.181818181818183 16811869.0 G186_M1_G186_M1 75.99 12776080.0 G186_M1_primary_unique 0.8755000000000001 63.164500000000004 185 235.633046 G186_M1_sorted 93.13055334656639 11898434 G186_M1_statistics_for_all_accepted_reads 29270788 29270788 G186_M1_statistics_for_primary_reads 26651934 26651934 G186_M1_statistics_for_primary_unique_reads 25552160 25552160 G186_M20_CKDL200158629-1a-D710-AK1545_HC2WKBBXX_L4_1 52.36952626134721 49.0 150.0 18.181818181818183 17473653.0 G186_M20_CKDL200158629-1a-D710-AK1545_HC2WKBBXX_L4_2 50.68357355520357 49.0 150.0 27.27272727272727 17473653.0 G186_M20_G186_M20 85.09 14868343.0 G186_M20_primary_unique 0.3589 70.7197 232 381.89700200000004 G186_M20_sorted 93.78863535768579 13944816 G186_M20_statistics_for_all_accepted_reads 33396812 33396812 G186_M20_statistics_for_primary_reads 30979552 30979552 G186_M20_statistics_for_primary_unique_reads 29736686 29736686 G186_M21_CKDL200158629-1a-D706-AK1680_HC2WKBBXX_L4_1 49.732773560649925 48.0 150.0 9.090909090909092 19866822.0 G186_M21_CKDL200158629-1a-D706-AK1680_HC2WKBBXX_L4_2 47.75987386019672 48.0 150.0 18.181818181818183 19866822.0 G186_M21_G186_M21 84.58 16802782.0 G186_M21_primary_unique 0.3784 65.8126 225 328.691096 G186_M21_sorted 93.25461700330338 15669370 G186_M21_statistics_for_all_accepted_reads 37778314 37778314 G186_M21_statistics_for_primary_reads 35035450 35035450 G186_M21_statistics_for_primary_unique_reads 33605564 33605564 G186_M22_CKDL200158629-1a-D706-AK1681_HC2WKBBXX_L4_1 65.59438726041728 49.0 150.0 18.181818181818183 20798268.0 G186_M22_CKDL200158629-1a-D706-AK1681_HC2WKBBXX_L4_2 63.7069441388966 50.0 150.0 18.181818181818183 20798268.0 G186_M22_G186_M22 81.89 17030976.0 G186_M22_primary_unique 0.4123 81.2017 260 600.406066 G186_M22_sorted 93.65867229218102 15950986 G186_M22_statistics_for_all_accepted_reads 39537358 39537358 G186_M22_statistics_for_primary_reads 35983248 35983248 G186_M22_statistics_for_primary_unique_reads 34061952 34061952 G186_M23_CKDL200158629-1a-D706-AK1682_HC2WKBBXX_L4_1 61.75787193934655 49.0 150.0 18.181818181818183 19497224.0 G186_M23_CKDL200158629-1a-D706-AK1682_HC2WKBBXX_L4_2 59.83220438130306 50.0 150.0 18.181818181818183 19497224.0 G186_M23_G186_M23 83.11 16204597.0 G186_M23_primary_unique 0.3262 79.43430000000001 236 478.327507 G186_M23_sorted 94.00720672041398 15233489 G186_M23_statistics_for_all_accepted_reads 36856320 36856320 G186_M23_statistics_for_primary_reads 33975146 33975146 G186_M23_statistics_for_primary_unique_reads 32409194 32409194 G186_M24_CKDL200158629-1a-D708-AK1545_HC2WKBBXX_L4_1 56.89547529750683 48.0 150.0 18.181818181818183 17348158.0 G186_M24_CKDL200158629-1a-D708-AK1545_HC2WKBBXX_L4_2 55.191880262901755 48.0 150.0 18.181818181818183 17348158.0 G186_M24_G186_M24 83.11 14417519.0 G186_M24_primary_unique 0.6361 70.6731 226 350.121575 G186_M24_sorted 91.05466758878556 13127824 G186_M24_statistics_for_all_accepted_reads 33734778 33734778 G186_M24_statistics_for_primary_reads 30697228 30697228 G186_M24_statistics_for_primary_unique_reads 28835038 28835038 G186_M25_CKDL200158629-1a-D707-AK1680_HC2WKBBXX_L4_1 62.06264758517058 49.0 150.0 27.27272727272727 18898603.0 G186_M25_CKDL200158629-1a-D707-AK1680_HC2WKBBXX_L4_2 61.07220797451968 49.0 150.0 18.181818181818183 18898603.0 G186_M25_G186_M25 83.49 15779375.0 G186_M25_primary_unique 0.7274 79.1202 267 564.117219 G186_M25_sorted 92.554001663564 14604443 G186_M25_statistics_for_all_accepted_reads 36741258 36741258 G186_M25_statistics_for_primary_reads 33464548 33464548 G186_M25_statistics_for_primary_unique_reads 31558750 31558750 G186_M2_CKDL200158629-1a-D701-AK1543_HC2WKBBXX_L4_1 48.08951007039269 50.0 150.0 9.090909090909092 17778715.0 G186_M2_CKDL200158629-1a-D701-AK1543_HC2WKBBXX_L4_2 46.0729019839732 50.0 150.0 18.181818181818183 17778715.0 G186_M2_G186_M2 77.79 13829857.0 G186_M2_primary_unique 0.5388999999999999 61.3841 191 244.045344 G186_M2_sorted 93.03159822982985 12866137 G186_M2_statistics_for_all_accepted_reads 31926078 31926078 G186_M2_statistics_for_primary_reads 28921868 28921868 G186_M2_statistics_for_primary_unique_reads 27659714 27659714 G186_M3_CKDL200158629-1a-D701-AK1680_HC2WKBBXX_L4_1 47.219190477361785 48.0 150.0 9.090909090909092 18450335.0 G186_M3_CKDL200158629-1a-D701-AK1680_HC2WKBBXX_L4_2 44.841971684734894 48.0 150.0 18.181818181818183 18450335.0 G186_M3_G186_M3 83.34 15376859.0 G186_M3_primary_unique 0.5359 60.166 216 279.467445 G186_M3_sorted 92.68443574854916 14251955 G186_M3_statistics_for_all_accepted_reads 34773726 34773726 G186_M3_statistics_for_primary_reads 32021694 32021694 G186_M3_statistics_for_primary_unique_reads 30753718 30753718 G186_M4_CKDL200158629-1a-D701-AK1545_HC2WKBBXX_L4_1 46.41385804000632 49.0 150.0 9.090909090909092 17873717.0 G186_M4_CKDL200158629-1a-D701-AK1545_HC2WKBBXX_L4_2 44.225328117878284 49.0 150.0 18.181818181818183 17873717.0 G186_M4_G186_M4 81.81 14623268.0 G186_M4_primary_unique 0.3556 60.402699999999996 205 265.995959 G186_M4_sorted 93.02082133761071 13602684 G186_M4_statistics_for_all_accepted_reads 33348582 33348582 G186_M4_statistics_for_primary_reads 30493230 30493230 G186_M4_statistics_for_primary_unique_reads 29246536 29246536 G186_M5_CKDL200158629-1a-D702-AK1780_HC2WKBBXX_L4_1 48.483497617491636 49.0 150.0 9.090909090909092 20313640.0 G186_M5_CKDL200158629-1a-D702-AK1780_HC2WKBBXX_L4_2 46.51347851390274 49.0 150.0 18.181818181818183 20313640.0 G186_M5_G186_M5 84.01 17064978.0 G186_M5_primary_unique 0.5700000000000001 66.3804 211 284.147554 G186_M5_sorted 93.02300887818315 15874356 G186_M5_statistics_for_all_accepted_reads 37610520 37610520 G186_M5_statistics_for_primary_reads 35292202 35292202 G186_M5_statistics_for_primary_unique_reads 34129956 34129956 G186_M6_CKDL200158629-1a-D702-AK1543_HC2WKBBXX_L4_1 47.73900039478022 48.0 150.0 9.090909090909092 20215917.0 G186_M6_CKDL200158629-1a-D702-AK1543_HC2WKBBXX_L4_2 45.44356171056245 49.0 150.0 18.181818181818183 20215917.0 G186_M6_G186_M6 84.63 17108699.0 G186_M6_primary_unique 0.5563 64.75619999999999 215 284.004815 G186_M6_sorted 92.88806238276797 15891939 G186_M6_statistics_for_all_accepted_reads 37873932 37873932 G186_M6_statistics_for_primary_reads 35432218 35432218 G186_M6_statistics_for_primary_unique_reads 34217398 34217398 G186_M7_CKDL200158629-1a-D702-AK1680_HC2WKBBXX_L4_1 45.84172634341528 48.0 150.0 9.090909090909092 20375437.0 G186_M7_CKDL200158629-1a-D702-AK1680_HC2WKBBXX_L4_2 43.596534089883754 48.0 150.0 18.181818181818183 20375437.0 G186_M7_G186_M7 84.23 17161273.0 G186_M7_primary_unique 0.3973 60.2812 209 267.344553 G186_M7_sorted 92.62876361211664 15896275 G186_M7_statistics_for_all_accepted_reads 37611184 37611184 G186_M7_statistics_for_primary_reads 35420778 35420778 G186_M7_statistics_for_primary_unique_reads 34322546 34322546 G186_M8_CKDL200158629-1a-D702-AK1545_HC2WKBBXX_L4_1 47.66280848924044 48.0 150.0 9.090909090909092 20377547.0 G186_M8_CKDL200158629-1a-D702-AK1545_HC2WKBBXX_L4_2 45.34839909609255 49.0 150.0 18.181818181818183 20377547.0 G186_M8_G186_M8 85.78 17480809.0 G186_M8_primary_unique 0.396 63.956100000000006 217 296.228399 G186_M8_sorted 93.56066987517568 16355162 G186_M8_statistics_for_all_accepted_reads 38214854 38214854 G186_M8_statistics_for_primary_reads 36058018 36058018 G186_M8_statistics_for_primary_unique_reads 34961618 34961618 G186_M9_CKDL200158629-1a-DY0088-AK1780_HC2WKBBXX_L4_1 51.26516856495621 48.0 150.0 18.181818181818183 16925122.0 G186_M9_CKDL200158629-1a-DY0088-AK1780_HC2WKBBXX_L4_2 48.96087783325535 49.0 150.0 18.181818181818183 16925122.0 G186_M9_G186_M9 83.78 14180473.0 G186_M9_primary_unique 0.5566 68.3017 222 335.5663109999999 G186_M9_sorted 93.46517566797667 13253804 G186_M9_statistics_for_all_accepted_reads 31844548 31844548 G186_M9_statistics_for_primary_reads 29505904 29505904 G186_M9_statistics_for_primary_unique_reads 28360946 28360946 statistics_for_primary_unique_reads 34322546 34322546