Module	Section	Sample Name	Source
RSeQC	infer_experiment	FIRKO_S593_Read_Strandness	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S593/Read_Strandness/FIRKO_S593_Read_Strandness.txt
RSeQC	infer_experiment	FIRKO_S658_Read_Strandness	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S658/Read_Strandness/FIRKO_S658_Read_Strandness.txt
RSeQC	infer_experiment	FIRKO_S661_Read_Strandness	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S661/Read_Strandness/FIRKO_S661_Read_Strandness.txt
RSeQC	infer_experiment	FIRKO_S649_Read_Strandness	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S649/Read_Strandness/FIRKO_S649_Read_Strandness.txt
RSeQC	infer_experiment	FIRKO_S584_Read_Strandness	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S584/Read_Strandness/FIRKO_S584_Read_Strandness.txt
RSeQC	infer_experiment	FIRKO_S662_Read_Strandness	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S662/Read_Strandness/FIRKO_S662_Read_Strandness.txt
RSeQC	infer_experiment	FIRKO_S664_Read_Strandness	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S664/Read_Strandness/FIRKO_S664_Read_Strandness.txt
RSeQC	infer_experiment	FIRKO_S665_Read_Strandness	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S665/Read_Strandness/FIRKO_S665_Read_Strandness.txt
RSeQC	infer_experiment	FIRKO_S594_Read_Strandness	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S594/Read_Strandness/FIRKO_S594_Read_Strandness.txt
featureCounts	all_sections	FIRKO_S593_sorted	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S593/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/FIRKO_S593_featureCounts.out.summary
featureCounts	all_sections	FIRKO_S658_sorted	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S658/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/FIRKO_S658_featureCounts.out.summary
featureCounts	all_sections	FIRKO_S661_sorted	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S661/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/FIRKO_S661_featureCounts.out.summary
featureCounts	all_sections	FIRKO_S649_sorted	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S649/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/FIRKO_S649_featureCounts.out.summary
featureCounts	all_sections	FIRKO_S584_sorted	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S584/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/FIRKO_S584_featureCounts.out.summary
featureCounts	all_sections	FIRKO_S662_sorted	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S662/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/FIRKO_S662_featureCounts.out.summary
featureCounts	all_sections	FIRKO_S664_sorted	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S664/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/FIRKO_S664_featureCounts.out.summary
featureCounts	all_sections	FIRKO_S665_sorted	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S665/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/FIRKO_S665_featureCounts.out.summary
featureCounts	all_sections	FIRKO_S594_sorted	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S594/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/FIRKO_S594_featureCounts.out.summary
Picard	InsertSizeMetrics	FIRKO_S593_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S593/CollectInsertSizeMetrics/FIRKO_S593_metrics
Picard	InsertSizeMetrics	FIRKO_S658_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S658/CollectInsertSizeMetrics/FIRKO_S658_metrics
Picard	InsertSizeMetrics	FIRKO_S661_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S661/CollectInsertSizeMetrics/FIRKO_S661_metrics
Picard	InsertSizeMetrics	FIRKO_S649_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S649/CollectInsertSizeMetrics/FIRKO_S649_metrics
Picard	InsertSizeMetrics	FIRKO_S584_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S584/CollectInsertSizeMetrics/FIRKO_S584_metrics
Picard	InsertSizeMetrics	FIRKO_S662_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S662/CollectInsertSizeMetrics/FIRKO_S662_metrics
Picard	InsertSizeMetrics	FIRKO_S664_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S664/CollectInsertSizeMetrics/FIRKO_S664_metrics
Picard	InsertSizeMetrics	FIRKO_S665_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S665/CollectInsertSizeMetrics/FIRKO_S665_metrics
Picard	InsertSizeMetrics	FIRKO_S594_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S594/CollectInsertSizeMetrics/FIRKO_S594_metrics
Picard	RnaSeqMetrics	FIRKO_S593_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S593/CollectRnaSeqMetrics/FIRKO_S593_metrics
Picard	RnaSeqMetrics	FIRKO_S658_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S658/CollectRnaSeqMetrics/FIRKO_S658_metrics
Picard	RnaSeqMetrics	FIRKO_S661_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S661/CollectRnaSeqMetrics/FIRKO_S661_metrics
Picard	RnaSeqMetrics	FIRKO_S649_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S649/CollectRnaSeqMetrics/FIRKO_S649_metrics
Picard	RnaSeqMetrics	FIRKO_S584_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S584/CollectRnaSeqMetrics/FIRKO_S584_metrics
Picard	RnaSeqMetrics	FIRKO_S662_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S662/CollectRnaSeqMetrics/FIRKO_S662_metrics
Picard	RnaSeqMetrics	FIRKO_S664_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S664/CollectRnaSeqMetrics/FIRKO_S664_metrics
Picard	RnaSeqMetrics	FIRKO_S665_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S665/CollectRnaSeqMetrics/FIRKO_S665_metrics
Picard	RnaSeqMetrics	FIRKO_S594_primary_unique	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S594/CollectRnaSeqMetrics/FIRKO_S594_metrics
Samtools	flagstat	FIRKO_S593_statistics_for_primary_unique_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S593/aligner/FIRKO_S593_statistics_for_primary_unique_reads.txt
Samtools	flagstat	FIRKO_S593_statistics_for_all_accepted_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S593/aligner/FIRKO_S593_statistics_for_all_accepted_reads.txt
Samtools	flagstat	FIRKO_S593_statistics_for_primary_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S593/aligner/FIRKO_S593_statistics_for_primary_reads.txt
Samtools	flagstat	FIRKO_S658_statistics_for_primary_unique_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S658/aligner/FIRKO_S658_statistics_for_primary_unique_reads.txt
Samtools	flagstat	FIRKO_S658_statistics_for_primary_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S658/aligner/FIRKO_S658_statistics_for_primary_reads.txt
Samtools	flagstat	FIRKO_S658_statistics_for_all_accepted_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S658/aligner/FIRKO_S658_statistics_for_all_accepted_reads.txt
Samtools	flagstat	FIRKO_S661_statistics_for_primary_unique_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S661/aligner/FIRKO_S661_statistics_for_primary_unique_reads.txt
Samtools	flagstat	FIRKO_S661_statistics_for_all_accepted_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S661/aligner/FIRKO_S661_statistics_for_all_accepted_reads.txt
Samtools	flagstat	FIRKO_S661_statistics_for_primary_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S661/aligner/FIRKO_S661_statistics_for_primary_reads.txt
Samtools	flagstat	FIRKO_S649_statistics_for_all_accepted_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S649/aligner/FIRKO_S649_statistics_for_all_accepted_reads.txt
Samtools	flagstat	FIRKO_S649_statistics_for_primary_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S649/aligner/FIRKO_S649_statistics_for_primary_reads.txt
Samtools	flagstat	FIRKO_S649_statistics_for_primary_unique_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S649/aligner/FIRKO_S649_statistics_for_primary_unique_reads.txt
Samtools	flagstat	FIRKO_S584_statistics_for_all_accepted_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S584/aligner/FIRKO_S584_statistics_for_all_accepted_reads.txt
Samtools	flagstat	FIRKO_S584_statistics_for_primary_unique_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S584/aligner/FIRKO_S584_statistics_for_primary_unique_reads.txt
Samtools	flagstat	FIRKO_S584_statistics_for_primary_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S584/aligner/FIRKO_S584_statistics_for_primary_reads.txt
Samtools	flagstat	FIRKO_S662_statistics_for_primary_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S662/aligner/FIRKO_S662_statistics_for_primary_reads.txt
Samtools	flagstat	FIRKO_S662_statistics_for_primary_unique_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S662/aligner/FIRKO_S662_statistics_for_primary_unique_reads.txt
Samtools	flagstat	FIRKO_S662_statistics_for_all_accepted_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S662/aligner/FIRKO_S662_statistics_for_all_accepted_reads.txt
Samtools	flagstat	FIRKO_S664_statistics_for_primary_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S664/aligner/FIRKO_S664_statistics_for_primary_reads.txt
Samtools	flagstat	FIRKO_S664_statistics_for_all_accepted_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S664/aligner/FIRKO_S664_statistics_for_all_accepted_reads.txt
Samtools	flagstat	FIRKO_S664_statistics_for_primary_unique_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S664/aligner/FIRKO_S664_statistics_for_primary_unique_reads.txt
Samtools	flagstat	FIRKO_S665_statistics_for_all_accepted_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S665/aligner/FIRKO_S665_statistics_for_all_accepted_reads.txt
Samtools	flagstat	FIRKO_S665_statistics_for_primary_unique_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S665/aligner/FIRKO_S665_statistics_for_primary_unique_reads.txt
Samtools	flagstat	FIRKO_S665_statistics_for_primary_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S665/aligner/FIRKO_S665_statistics_for_primary_reads.txt
Samtools	flagstat	FIRKO_S594_statistics_for_all_accepted_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S594/aligner/FIRKO_S594_statistics_for_all_accepted_reads.txt
Samtools	flagstat	FIRKO_S594_statistics_for_primary_unique_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S594/aligner/FIRKO_S594_statistics_for_primary_unique_reads.txt
Samtools	flagstat	FIRKO_S594_statistics_for_primary_reads	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S594/aligner/FIRKO_S594_statistics_for_primary_reads.txt
STAR	SummaryLog	FIRKO_S593_FIRKO_S593	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S593/aligner/FIRKO_S593_FIRKO_S593_Log.final.out
STAR	SummaryLog	FIRKO_S658_FIRKO_S658	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S658/aligner/FIRKO_S658_FIRKO_S658_Log.final.out
STAR	SummaryLog	FIRKO_S661_FIRKO_S661	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S661/aligner/FIRKO_S661_FIRKO_S661_Log.final.out
STAR	SummaryLog	FIRKO_S649_FIRKO_S649	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S649/aligner/FIRKO_S649_FIRKO_S649_Log.final.out
STAR	SummaryLog	FIRKO_S584_FIRKO_S584	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S584/aligner/FIRKO_S584_FIRKO_S584_Log.final.out
STAR	SummaryLog	FIRKO_S662_FIRKO_S662	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S662/aligner/FIRKO_S662_FIRKO_S662_Log.final.out
STAR	SummaryLog	FIRKO_S664_FIRKO_S664	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S664/aligner/FIRKO_S664_FIRKO_S664_Log.final.out
STAR	SummaryLog	FIRKO_S665_FIRKO_S665	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S665/aligner/FIRKO_S665_FIRKO_S665_Log.final.out
STAR	SummaryLog	FIRKO_S594_FIRKO_S594	/projectnb2/wax-dk/max/FIRKO/FIRKO/SAMPLES/FIRKO_S594/aligner/FIRKO_S594_FIRKO_S594_Log.final.out
FastQC	all_sections	662_R1_001	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S662_FASTQC/662_R1_001_fastqc.zip
FastQC	all_sections	662_R2_001	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S662_FASTQC/662_R2_001_fastqc.zip
FastQC	all_sections	658_R1	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S658_FASTQC/658_R1_fastqc.zip
FastQC	all_sections	658_R2	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S658_FASTQC/658_R2_fastqc.zip
FastQC	all_sections	594_R1_001	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S594_FASTQC/594_R1_001_fastqc.zip
FastQC	all_sections	594_R2_001	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S594_FASTQC/594_R2_001_fastqc.zip
FastQC	all_sections	584_R1_001	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S584_FASTQC/584_R1_001_fastqc.zip
FastQC	all_sections	584_R2_001	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S584_FASTQC/584_R2_001_fastqc.zip
FastQC	all_sections	665_R1_001	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S665_FASTQC/665_R1_001_fastqc.zip
FastQC	all_sections	665_R2_001	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S665_FASTQC/665_R2_001_fastqc.zip
FastQC	all_sections	661_R1_001	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S661_FASTQC/661_R1_001_fastqc.zip
FastQC	all_sections	661_R2_001	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S661_FASTQC/661_R2_001_fastqc.zip
FastQC	all_sections	593_R2_001	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S593_FASTQC/593_R2_001_fastqc.zip
FastQC	all_sections	593_R1_001	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S593_FASTQC/593_R1_001_fastqc.zip
FastQC	all_sections	664_R1_001	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S664_FASTQC/664_R1_001_fastqc.zip
FastQC	all_sections	664_R2_001	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S664_FASTQC/664_R2_001_fastqc.zip
FastQC	all_sections	649_R2	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S649_FASTQC/649_R2_fastqc.zip
FastQC	all_sections	649_R1	/projectnb2/wax-dk/max/FIRKO/FIRKO/Scripts/03_FASTQC/Job_Summary/FIRKO_S649_FASTQC/649_R1_fastqc.zip