Module	Section	Sample Name	Source
MACS2	all_sections	G220M03_narrow_MACS2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M03/fastq/bowtie2/G220M03_MACS2_output/G220M03_narrow_MACS2_peaks.xls
MACS2	all_sections	G220M03_broad_MACS2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M03/fastq/bowtie2/G220M03_MACS2_output/G220M03_broad_MACS2_peaks.xls
MACS2	all_sections	G220M06_narrow_MACS2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M06/fastq/bowtie2/G220M06_MACS2_output/G220M06_narrow_MACS2_peaks.xls
MACS2	all_sections	G220M06_broad_MACS2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M06/fastq/bowtie2/G220M06_MACS2_output/G220M06_broad_MACS2_peaks.xls
MACS2	all_sections	G220M05_broad_MACS2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M05/fastq/bowtie2/G220M05_MACS2_output/G220M05_broad_MACS2_peaks.xls
MACS2	all_sections	G220M05_narrow_MACS2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M05/fastq/bowtie2/G220M05_MACS2_output/G220M05_narrow_MACS2_peaks.xls
MACS2	all_sections	G220M02_broad_MACS2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M02/fastq/bowtie2/G220M02_MACS2_output/G220M02_broad_MACS2_peaks.xls
MACS2	all_sections	G220M02_narrow_MACS2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M02/fastq/bowtie2/G220M02_MACS2_output/G220M02_narrow_MACS2_peaks.xls
MACS2	all_sections	G220M04_narrow_MACS2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M04/fastq/bowtie2/G220M04_MACS2_output/G220M04_narrow_MACS2_peaks.xls
MACS2	all_sections	G220M04_broad_MACS2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M04/fastq/bowtie2/G220M04_MACS2_output/G220M04_broad_MACS2_peaks.xls
MACS2	all_sections	G220M01_narrow_MACS2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M01/fastq/bowtie2/G220M01_MACS2_output/G220M01_narrow_MACS2_peaks.xls
MACS2	all_sections	G220M01_broad_MACS2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M01/fastq/bowtie2/G220M01_MACS2_output/G220M01_broad_MACS2_peaks.xls
Picard	InsertSizeMetrics	G220M03_sorted_mapped	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M03/fastq/bowtie2/CollectInsertSizeMetrics/G220M03_metrics
Picard	InsertSizeMetrics	G220M06_sorted_mapped	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M06/fastq/bowtie2/CollectInsertSizeMetrics/G220M06_metrics
Picard	InsertSizeMetrics	G220M05_sorted_mapped	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M05/fastq/bowtie2/CollectInsertSizeMetrics/G220M05_metrics
Picard	InsertSizeMetrics	G220M02_sorted_mapped	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M02/fastq/bowtie2/CollectInsertSizeMetrics/G220M02_metrics
Picard	InsertSizeMetrics	G220M04_sorted_mapped	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M04/fastq/bowtie2/CollectInsertSizeMetrics/G220M04_metrics
Picard	InsertSizeMetrics	G220M01_sorted_mapped	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M01/fastq/bowtie2/CollectInsertSizeMetrics/G220M01_metrics
Samtools	flagstat	flagstat_G220M03	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M03/fastq/bowtie2/flagstat_G220M03.txt
Samtools	flagstat	flagstat_G220M06	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M06/fastq/bowtie2/flagstat_G220M06.txt
Samtools	flagstat	flagstat_G220M05	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M05/fastq/bowtie2/flagstat_G220M05.txt
Samtools	flagstat	flagstat_G220M02	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M02/fastq/bowtie2/flagstat_G220M02.txt
Samtools	flagstat	flagstat_G220M04	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M04/fastq/bowtie2/flagstat_G220M04.txt
Samtools	flagstat	flagstat_G220M01	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M01/fastq/bowtie2/flagstat_G220M01.txt
Samtools	idxstats	G220M03_idxstats	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G220M03_idxstats.out
Samtools	idxstats	G220M06_idxstats	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G220M06_idxstats.out
Samtools	idxstats	G220M05_idxstats	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G220M05_idxstats.out
Samtools	idxstats	G220M02_idxstats	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G220M02_idxstats.out
Samtools	idxstats	G220M04_idxstats	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G220M04_idxstats.out
Samtools	idxstats	G220M01_idxstats	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G220M01_idxstats.out
Bowtie 2 / HiSAT2	all_sections	G220_M03_CKDL230041222-1A_HHWMJDSX7_L1_R1	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/04_Bowtie2/Step_04_G220_SG_CHIPSEQ_G220M03.o3375789
Bowtie 2 / HiSAT2	all_sections	G220_M06_CKDL230041222-1A_HHWMJDSX7_L1_R1	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/04_Bowtie2/Step_04_G220_SG_CHIPSEQ_G220M06.o3375792
Bowtie 2 / HiSAT2	all_sections	README_Bowtie2.sh	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/04_Bowtie2/README_Bowtie2.sh
Bowtie 2 / HiSAT2	all_sections	G220_M04_CKDL230041222-1A_HHWMJDSX7_L1_R1	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/04_Bowtie2/Step_04_G220_SG_CHIPSEQ_G220M04.o3375790
Bowtie 2 / HiSAT2	all_sections	G220_M02_CKDL230041222-1A_HHWMJDSX7_L1_R1	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/04_Bowtie2/Step_04_G220_SG_CHIPSEQ_G220M02.o3375788
Bowtie 2 / HiSAT2	all_sections	G220_M05_CKDL230041222-1A_HHWMJDSX7_L1_R1	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/04_Bowtie2/Step_04_G220_SG_CHIPSEQ_G220M05.o3375791
Bowtie 2 / HiSAT2	all_sections	G220_M01_CKDL230041222-1A_HHWMJDSX7_L1_R1	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/04_Bowtie2/Step_04_G220_SG_CHIPSEQ_G220M01.o3375787
FastQC	all_sections	G220_M04_CKDL230041222-1A_HHWMJDSX7_L1_R1	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M04_FASTQC/G220_M04_CKDL230041222-1A_HHWMJDSX7_L1_R1_fastqc.zip
FastQC	all_sections	G220_M04_CKDL230041222-1A_HHWMJDSX7_L1_R2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M04_FASTQC/G220_M04_CKDL230041222-1A_HHWMJDSX7_L1_R2_fastqc.zip
FastQC	all_sections	G220_M02_CKDL230041222-1A_HHWMJDSX7_L1_R2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M02_FASTQC/G220_M02_CKDL230041222-1A_HHWMJDSX7_L1_R2_fastqc.zip
FastQC	all_sections	G220_M02_CKDL230041222-1A_HHWMJDSX7_L1_R1	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M02_FASTQC/G220_M02_CKDL230041222-1A_HHWMJDSX7_L1_R1_fastqc.zip
FastQC	all_sections	G220_M05_CKDL230041222-1A_HHWMJDSX7_L1_R2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M05_FASTQC/G220_M05_CKDL230041222-1A_HHWMJDSX7_L1_R2_fastqc.zip
FastQC	all_sections	G220_M05_CKDL230041222-1A_HHWMJDSX7_L1_R1	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M05_FASTQC/G220_M05_CKDL230041222-1A_HHWMJDSX7_L1_R1_fastqc.zip
FastQC	all_sections	G220_M06_CKDL230041222-1A_HHWMJDSX7_L1_R1	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M06_FASTQC/G220_M06_CKDL230041222-1A_HHWMJDSX7_L1_R1_fastqc.zip
FastQC	all_sections	G220_M06_CKDL230041222-1A_HHWMJDSX7_L1_R2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M06_FASTQC/G220_M06_CKDL230041222-1A_HHWMJDSX7_L1_R2_fastqc.zip
FastQC	all_sections	G220_M03_CKDL230041222-1A_HHWMJDSX7_L1_R2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M03_FASTQC/G220_M03_CKDL230041222-1A_HHWMJDSX7_L1_R2_fastqc.zip
FastQC	all_sections	G220_M03_CKDL230041222-1A_HHWMJDSX7_L1_R1	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M03_FASTQC/G220_M03_CKDL230041222-1A_HHWMJDSX7_L1_R1_fastqc.zip
FastQC	all_sections	G220_M01_CKDL230041222-1A_HHWMJDSX7_L1_R1	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M01_FASTQC/G220_M01_CKDL230041222-1A_HHWMJDSX7_L1_R1_fastqc.zip
FastQC	all_sections	G220_M01_CKDL230041222-1A_HHWMJDSX7_L1_R2	/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M01_FASTQC/G220_M01_CKDL230041222-1A_HHWMJDSX7_L1_R2_fastqc.zip