{
"report_data_sources": {
"MACS2": {
"all_sections": {
"G220M03_narrow_MACS2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M03/fastq/bowtie2/G220M03_MACS2_output/G220M03_narrow_MACS2_peaks.xls",
"G220M03_broad_MACS2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M03/fastq/bowtie2/G220M03_MACS2_output/G220M03_broad_MACS2_peaks.xls",
"G220M06_narrow_MACS2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M06/fastq/bowtie2/G220M06_MACS2_output/G220M06_narrow_MACS2_peaks.xls",
"G220M06_broad_MACS2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M06/fastq/bowtie2/G220M06_MACS2_output/G220M06_broad_MACS2_peaks.xls",
"G220M05_broad_MACS2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M05/fastq/bowtie2/G220M05_MACS2_output/G220M05_broad_MACS2_peaks.xls",
"G220M05_narrow_MACS2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M05/fastq/bowtie2/G220M05_MACS2_output/G220M05_narrow_MACS2_peaks.xls",
"G220M02_broad_MACS2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M02/fastq/bowtie2/G220M02_MACS2_output/G220M02_broad_MACS2_peaks.xls",
"G220M02_narrow_MACS2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M02/fastq/bowtie2/G220M02_MACS2_output/G220M02_narrow_MACS2_peaks.xls",
"G220M04_narrow_MACS2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M04/fastq/bowtie2/G220M04_MACS2_output/G220M04_narrow_MACS2_peaks.xls",
"G220M04_broad_MACS2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M04/fastq/bowtie2/G220M04_MACS2_output/G220M04_broad_MACS2_peaks.xls",
"G220M01_narrow_MACS2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M01/fastq/bowtie2/G220M01_MACS2_output/G220M01_narrow_MACS2_peaks.xls",
"G220M01_broad_MACS2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M01/fastq/bowtie2/G220M01_MACS2_output/G220M01_broad_MACS2_peaks.xls"
}
},
"Picard": {
"InsertSizeMetrics": {
"G220M03_sorted_mapped": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M03/fastq/bowtie2/CollectInsertSizeMetrics/G220M03_metrics",
"G220M06_sorted_mapped": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M06/fastq/bowtie2/CollectInsertSizeMetrics/G220M06_metrics",
"G220M05_sorted_mapped": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M05/fastq/bowtie2/CollectInsertSizeMetrics/G220M05_metrics",
"G220M02_sorted_mapped": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M02/fastq/bowtie2/CollectInsertSizeMetrics/G220M02_metrics",
"G220M04_sorted_mapped": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M04/fastq/bowtie2/CollectInsertSizeMetrics/G220M04_metrics",
"G220M01_sorted_mapped": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M01/fastq/bowtie2/CollectInsertSizeMetrics/G220M01_metrics"
}
},
"Samtools": {
"flagstat": {
"flagstat_G220M03": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M03/fastq/bowtie2/flagstat_G220M03.txt",
"flagstat_G220M06": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M06/fastq/bowtie2/flagstat_G220M06.txt",
"flagstat_G220M05": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M05/fastq/bowtie2/flagstat_G220M05.txt",
"flagstat_G220M02": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M02/fastq/bowtie2/flagstat_G220M02.txt",
"flagstat_G220M04": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M04/fastq/bowtie2/flagstat_G220M04.txt",
"flagstat_G220M01": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/G220M01/fastq/bowtie2/flagstat_G220M01.txt"
},
"idxstats": {
"G220M03_idxstats": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G220M03_idxstats.out",
"G220M06_idxstats": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G220M06_idxstats.out",
"G220M05_idxstats": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G220M05_idxstats.out",
"G220M02_idxstats": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G220M02_idxstats.out",
"G220M04_idxstats": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G220M04_idxstats.out",
"G220M01_idxstats": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G220M01_idxstats.out"
}
},
"Bowtie 2 / HiSAT2": {
"all_sections": {
"G220_M03_CKDL230041222-1A_HHWMJDSX7_L1_R1": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/04_Bowtie2/Step_04_G220_SG_CHIPSEQ_G220M03.o3375789",
"G220_M06_CKDL230041222-1A_HHWMJDSX7_L1_R1": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/04_Bowtie2/Step_04_G220_SG_CHIPSEQ_G220M06.o3375792",
"README_Bowtie2.sh": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/04_Bowtie2/README_Bowtie2.sh",
"G220_M04_CKDL230041222-1A_HHWMJDSX7_L1_R1": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/04_Bowtie2/Step_04_G220_SG_CHIPSEQ_G220M04.o3375790",
"G220_M02_CKDL230041222-1A_HHWMJDSX7_L1_R1": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/04_Bowtie2/Step_04_G220_SG_CHIPSEQ_G220M02.o3375788",
"G220_M05_CKDL230041222-1A_HHWMJDSX7_L1_R1": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/04_Bowtie2/Step_04_G220_SG_CHIPSEQ_G220M05.o3375791",
"G220_M01_CKDL230041222-1A_HHWMJDSX7_L1_R1": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/04_Bowtie2/Step_04_G220_SG_CHIPSEQ_G220M01.o3375787"
}
},
"FastQC": {
"all_sections": {
"G220_M04_CKDL230041222-1A_HHWMJDSX7_L1_R1": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M04_FASTQC/G220_M04_CKDL230041222-1A_HHWMJDSX7_L1_R1_fastqc.zip",
"G220_M04_CKDL230041222-1A_HHWMJDSX7_L1_R2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M04_FASTQC/G220_M04_CKDL230041222-1A_HHWMJDSX7_L1_R2_fastqc.zip",
"G220_M02_CKDL230041222-1A_HHWMJDSX7_L1_R2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M02_FASTQC/G220_M02_CKDL230041222-1A_HHWMJDSX7_L1_R2_fastqc.zip",
"G220_M02_CKDL230041222-1A_HHWMJDSX7_L1_R1": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M02_FASTQC/G220_M02_CKDL230041222-1A_HHWMJDSX7_L1_R1_fastqc.zip",
"G220_M05_CKDL230041222-1A_HHWMJDSX7_L1_R2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M05_FASTQC/G220_M05_CKDL230041222-1A_HHWMJDSX7_L1_R2_fastqc.zip",
"G220_M05_CKDL230041222-1A_HHWMJDSX7_L1_R1": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M05_FASTQC/G220_M05_CKDL230041222-1A_HHWMJDSX7_L1_R1_fastqc.zip",
"G220_M06_CKDL230041222-1A_HHWMJDSX7_L1_R1": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M06_FASTQC/G220_M06_CKDL230041222-1A_HHWMJDSX7_L1_R1_fastqc.zip",
"G220_M06_CKDL230041222-1A_HHWMJDSX7_L1_R2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M06_FASTQC/G220_M06_CKDL230041222-1A_HHWMJDSX7_L1_R2_fastqc.zip",
"G220_M03_CKDL230041222-1A_HHWMJDSX7_L1_R2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M03_FASTQC/G220_M03_CKDL230041222-1A_HHWMJDSX7_L1_R2_fastqc.zip",
"G220_M03_CKDL230041222-1A_HHWMJDSX7_L1_R1": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M03_FASTQC/G220_M03_CKDL230041222-1A_HHWMJDSX7_L1_R1_fastqc.zip",
"G220_M01_CKDL230041222-1A_HHWMJDSX7_L1_R1": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M01_FASTQC/G220_M01_CKDL230041222-1A_HHWMJDSX7_L1_R1_fastqc.zip",
"G220_M01_CKDL230041222-1A_HHWMJDSX7_L1_R2": "/projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/02_FASTQC/Job_Summary/G220M01_FASTQC/G220_M01_CKDL230041222-1A_HHWMJDSX7_L1_R2_fastqc.zip"
}
}
},
"report_general_stats_data": [
{
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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}
},
{
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},
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},
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}
},
{
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"with mate mapped to a different chr_passed": 13042,
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}
},
{
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},
"README_Bowtie2.sh": {
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"overall_alignment_rate": 95.16
},
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