[2024-01-01 14:41:41,666] multiqc [DEBUG ] This is MultiQC v1.12 [2024-01-01 14:41:41,667] multiqc [DEBUG ] No MultiQC config found: /usr/lib/python3.8/site-packages/multiqc_config.yaml [2024-01-01 14:41:41,668] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-01-01 14:41:41,668] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-01-01 14:41:41,668] multiqc [DEBUG ] Command used: /usr/bin/multiqc /projectnb2/wax-dk/max/G220_SG_CHIPSEQ/ -o Job_Summary/G220_SG_CHIPSEQ_MULTIQC [2024-01-01 14:41:41,943] multiqc [WARNING] MultiQC Version v1.19 now available! [2024-01-01 14:41:41,944] multiqc [DEBUG ] Command : /usr/bin/multiqc /projectnb2/wax-dk/max/G220_SG_CHIPSEQ/ -o Job_Summary/G220_SG_CHIPSEQ_MULTIQC [2024-01-01 14:41:41,944] multiqc [DEBUG ] Working dir : /projectnb2/wax-dk/max/G220_SG_CHIPSEQ/Scripts/16_MULTIQC [2024-01-01 14:41:41,944] multiqc [DEBUG ] Template : default [2024-01-01 14:41:41,944] multiqc [DEBUG ] Running Python 3.8.1 (default, Dec 26 2019, 14:42:08) [GCC 9.2.0] [2024-01-01 14:41:41,946] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2024-01-01 14:41:41,946] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp10hl89wu [2024-01-01 14:41:42,075] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G220_SG_CHIPSEQ [2024-01-01 14:41:42,495] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2024-01-01 14:41:42,499] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2024-01-01 14:41:42,499] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2024-01-01 14:41:42,505] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2024-01-01 14:41:42,520] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2024-01-01 14:41:42,527] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: copy_from_indexfile.py [2024-01-01 14:41:42,530] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: copy_from_indexfile.py [2024-01-01 14:41:42,556] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: copy_samples.py [2024-01-01 14:41:42,559] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: copy_samples.py [2024-01-01 14:41:42,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: copy_samples.py [2024-01-01 14:41:42,564] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: copy_samples.py [2024-01-01 14:41:42,575] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: copy_samples.py [2024-01-01 14:41:42,597] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220_M03_CKDL230041222-1A_HHWMJDSX7_L1_R2.fastq.gz [2024-01-01 14:41:42,597] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220_M03_CKDL230041222-1A_HHWMJDSX7_L1_R1.fastq.gz [2024-01-01 14:41:42,597] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_sorted_mapped.bam.bai [2024-01-01 14:41:42,625] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_alignments.bam [2024-01-01 14:41:42,626] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_alignments.bam.bai [2024-01-01 14:41:42,626] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_sorted_mapped.bam [2024-01-01 14:41:42,631] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:41:42,633] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:41:42,634] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:41:42,639] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:41:42,639] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:41:42,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:41:42,640] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:41:42,640] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:41:42,640] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:41:42,640] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:41:42,640] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:41:42,640] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:41:42,640] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:41:44,915] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:41:45,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_filtered_StrgtPks_sorted.bam.bai [2024-01-01 14:41:45,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_filtered_StrgtPks_sorted.bam [2024-01-01 14:41:45,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_filtered_StrgtPks.bam [2024-01-01 14:41:45,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_StrgtPksRm_tab.bed [2024-01-01 14:41:45,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_filtered_StrgtPks.bam.bai [2024-01-01 14:41:45,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_StrgtPks_tab.bed [2024-01-01 14:41:45,082] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.gappedPeak [2024-01-01 14:41:45,086] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.gappedPeak [2024-01-01 14:41:45,087] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.gappedPeak [2024-01-01 14:41:45,093] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.gappedPeak [2024-01-01 14:41:45,093] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.gappedPeak [2024-01-01 14:41:45,093] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.gappedPeak [2024-01-01 14:41:45,093] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.gappedPeak [2024-01-01 14:41:45,094] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.gappedPeak [2024-01-01 14:41:45,094] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.gappedPeak [2024-01-01 14:41:45,094] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.gappedPeak [2024-01-01 14:41:45,094] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.gappedPeak [2024-01-01 14:41:45,094] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.gappedPeak [2024-01-01 14:41:45,094] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.gappedPeak [2024-01-01 14:41:46,407] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.gappedPeak [2024-01-01 14:41:46,506] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_broad_MACS2_peaks.broadPeak.bed [2024-01-01 14:41:46,548] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak [2024-01-01 14:41:46,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak [2024-01-01 14:41:46,553] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak [2024-01-01 14:41:46,558] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak [2024-01-01 14:41:46,558] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak [2024-01-01 14:41:46,559] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak [2024-01-01 14:41:46,559] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak [2024-01-01 14:41:46,559] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak [2024-01-01 14:41:46,559] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak [2024-01-01 14:41:46,559] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak [2024-01-01 14:41:46,559] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak [2024-01-01 14:41:46,584] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak [2024-01-01 14:41:47,717] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak [2024-01-01 14:41:47,793] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:41:47,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:41:47,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:41:47,801] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:41:47,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:41:47,808] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:41:47,810] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_narrow_MACS2_summits.bed [2024-01-01 14:41:47,816] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M03_read_MACS2_peaks.out1 [2024-01-01 14:41:47,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M03_read_MACS2_peaks.out1 [2024-01-01 14:41:47,819] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M03_read_MACS2_peaks.out1 [2024-01-01 14:41:47,824] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M03_read_MACS2_peaks.out1 [2024-01-01 14:41:47,824] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M03_read_MACS2_peaks.out1 [2024-01-01 14:41:47,825] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M03_read_MACS2_peaks.out1 [2024-01-01 14:41:47,825] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M03_read_MACS2_peaks.out1 [2024-01-01 14:41:47,825] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M03_read_MACS2_peaks.out1 [2024-01-01 14:41:47,825] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M03_read_MACS2_peaks.out1 [2024-01-01 14:41:47,825] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M03_read_MACS2_peaks.out1 [2024-01-01 14:41:47,825] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M03_read_MACS2_peaks.out1 [2024-01-01 14:41:47,844] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M03_read_MACS2_peaks.out1 [2024-01-01 14:41:48,740] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M03_read_MACS2_peaks.out1 [2024-01-01 14:41:48,824] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:41:48,828] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:41:48,828] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:41:48,835] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:41:48,835] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:41:48,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:41:48,835] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:41:48,835] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:41:48,835] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:41:48,835] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:41:48,835] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:41:48,860] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:41:49,768] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M03_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:41:49,825] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:41:49,830] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:41:49,832] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:41:49,832] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:41:49,836] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:41:49,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:41:49,836] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:41:49,836] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:41:49,836] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:41:49,836] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:41:49,836] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:41:49,842] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M03_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:41:49,843] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2024-01-01 14:41:49,844] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_narrow_MACS2_peaks.narrowPeak_common.bed [2024-01-01 14:41:49,844] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2024-01-01 14:41:49,848] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:41:49,850] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:41:49,862] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2024-01-01 14:41:49,862] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2024-01-01 14:41:49,863] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_narrow_MACS2_peaks.narrowPeak_unique.bed [2024-01-01 14:41:49,871] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M03_metrics [2024-01-01 14:41:49,875] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M03_metrics [2024-01-01 14:41:49,876] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M03_metrics [2024-01-01 14:41:49,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M03_metrics [2024-01-01 14:41:49,898] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M03_metrics [2024-01-01 14:41:49,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_hist.pdf [2024-01-01 14:41:49,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03-W400-G2400-E100-islandfiltered.bed [2024-01-01 14:41:49,937] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:49,942] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:49,942] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:49,948] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:49,948] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:49,949] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:49,949] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:49,949] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:49,949] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:49,949] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:49,949] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:49,949] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:49,949] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:57,104] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:57,558] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland [2024-01-01 14:41:57,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland [2024-01-01 14:41:57,560] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland [2024-01-01 14:41:57,565] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland [2024-01-01 14:41:57,565] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland [2024-01-01 14:41:57,565] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland [2024-01-01 14:41:57,565] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland [2024-01-01 14:41:57,565] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland [2024-01-01 14:41:57,565] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland [2024-01-01 14:41:57,565] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland [2024-01-01 14:41:57,974] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland [2024-01-01 14:41:58,008] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland.bb [2024-01-01 14:41:58,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland.bb [2024-01-01 14:41:58,011] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland.bb [2024-01-01 14:41:58,016] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland.bb [2024-01-01 14:41:58,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland.bb [2024-01-01 14:41:58,023] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M03-W400-G2400-E100.scoreisland.bb [2024-01-01 14:41:58,031] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M03_read_SICER.out1 [2024-01-01 14:41:58,033] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M03_read_SICER.out1 [2024-01-01 14:41:58,033] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M03_read_SICER.out1 [2024-01-01 14:41:58,037] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M03_read_SICER.out1 [2024-01-01 14:41:58,038] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M03_read_SICER.out1 [2024-01-01 14:41:58,038] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M03_read_SICER.out1 [2024-01-01 14:41:58,038] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M03_read_SICER.out1 [2024-01-01 14:41:58,038] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M03_read_SICER.out1 [2024-01-01 14:41:58,038] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M03_read_SICER.out1 [2024-01-01 14:41:58,038] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M03_read_SICER.out1 [2024-01-01 14:41:58,038] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M03_read_SICER.out1 [2024-01-01 14:41:58,046] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M03_read_SICER.out1 [2024-01-01 14:41:58,478] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M03_read_SICER.out1 [2024-01-01 14:41:58,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03-1-removed.bed [2024-01-01 14:41:58,504] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2024-01-01 14:41:58,504] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2024-01-01 14:41:58,509] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:41:58,511] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:41:58,522] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2024-01-01 14:41:58,523] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03-W400-G2400-E100.scoreisland_unique.bed [2024-01-01 14:41:58,523] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2024-01-01 14:41:58,523] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03-W400-G2400-E100.scoreisland_common.bed [2024-01-01 14:41:58,523] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2024-01-01 14:41:58,532] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2024-01-01 14:41:58,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2024-01-01 14:41:58,537] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2024-01-01 14:41:58,545] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2024-01-01 14:41:58,557] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2024-01-01 14:41:58,563] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2024-01-01 14:41:58,565] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2024-01-01 14:41:58,565] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2024-01-01 14:41:58,569] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2024-01-01 14:41:58,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2024-01-01 14:41:58,575] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2024-01-01 14:41:58,576] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: DNAChIPseq_pipeline.pdf [2024-01-01 14:41:58,584] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220_M06_CKDL230041222-1A_HHWMJDSX7_L1_R1.fastq.gz [2024-01-01 14:41:58,587] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220_M06_CKDL230041222-1A_HHWMJDSX7_L1_R2.fastq.gz [2024-01-01 14:41:58,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_alignments.bam.bai [2024-01-01 14:41:58,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_sorted_mapped.bam.bai [2024-01-01 14:41:58,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_alignments.bam [2024-01-01 14:41:58,607] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_sorted_mapped.bam [2024-01-01 14:41:58,608] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06-W400-G2400-E100-islandfiltered.bed [2024-01-01 14:41:58,639] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M06_read_SICER.out1 [2024-01-01 14:41:58,642] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M06_read_SICER.out1 [2024-01-01 14:41:58,642] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M06_read_SICER.out1 [2024-01-01 14:41:58,646] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M06_read_SICER.out1 [2024-01-01 14:41:58,647] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M06_read_SICER.out1 [2024-01-01 14:41:58,647] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M06_read_SICER.out1 [2024-01-01 14:41:58,647] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M06_read_SICER.out1 [2024-01-01 14:41:58,647] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M06_read_SICER.out1 [2024-01-01 14:41:58,647] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M06_read_SICER.out1 [2024-01-01 14:41:58,647] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M06_read_SICER.out1 [2024-01-01 14:41:59,007] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M06_read_SICER.out1 [2024-01-01 14:41:59,033] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland [2024-01-01 14:41:59,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland [2024-01-01 14:41:59,035] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland [2024-01-01 14:41:59,039] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland [2024-01-01 14:41:59,039] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland [2024-01-01 14:41:59,039] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland [2024-01-01 14:41:59,039] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland [2024-01-01 14:41:59,039] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland [2024-01-01 14:41:59,039] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland [2024-01-01 14:41:59,039] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland [2024-01-01 14:41:59,372] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland [2024-01-01 14:41:59,390] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06-1-removed.bed [2024-01-01 14:41:59,391] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2024-01-01 14:41:59,397] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland.bb [2024-01-01 14:41:59,399] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland.bb [2024-01-01 14:41:59,400] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland.bb [2024-01-01 14:41:59,404] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland.bb [2024-01-01 14:41:59,404] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland.bb [2024-01-01 14:41:59,409] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100.scoreisland.bb [2024-01-01 14:41:59,455] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:59,460] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:59,461] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:59,466] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:59,467] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:59,467] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:59,467] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:59,467] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:59,467] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:59,467] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:59,467] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:41:59,562] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:03,908] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M06-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:04,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2024-01-01 14:42:04,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2024-01-01 14:42:04,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06-W400-G2400-E100.scoreisland_common.bed [2024-01-01 14:42:04,173] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:04,176] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:04,187] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06-W400-G2400-E100.scoreisland_unique.bed [2024-01-01 14:42:04,187] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2024-01-01 14:42:04,187] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2024-01-01 14:42:04,191] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:42:04,193] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:42:04,193] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:42:04,197] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:42:04,197] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:42:04,197] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:42:04,197] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:42:04,197] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:42:04,197] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:42:04,197] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:42:04,197] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:42:04,197] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:42:04,197] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:42:06,554] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:42:06,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_StrgtPks_tab.bed [2024-01-01 14:42:06,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_StrgtPksRm_tab.bed [2024-01-01 14:42:06,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_filtered_StrgtPks_sorted.bam.bai [2024-01-01 14:42:06,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_filtered_StrgtPks_sorted.bam [2024-01-01 14:42:06,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_filtered_StrgtPks.bam [2024-01-01 14:42:06,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_filtered_StrgtPks.bam.bai [2024-01-01 14:42:06,714] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:06,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:06,719] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:06,724] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:06,724] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:06,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:06,725] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:06,725] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:06,725] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:06,725] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:06,725] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:06,758] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:07,756] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:07,814] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:07,816] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:07,816] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:07,819] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:07,820] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:07,820] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:07,820] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:07,820] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:07,820] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:07,820] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:07,825] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:07,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:07,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:07,868] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:07,874] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:07,874] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:07,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:07,874] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:07,874] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:07,875] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:07,875] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:07,875] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:07,895] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:08,800] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M06_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:08,850] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:42:08,854] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:08,856] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:08,857] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:08,860] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:08,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:08,866] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:08,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_broad_MACS2_peaks.broadPeak.bed [2024-01-01 14:42:08,889] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_narrow_MACS2_summits.bed [2024-01-01 14:42:08,894] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M06_read_MACS2_peaks.out1 [2024-01-01 14:42:08,896] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M06_read_MACS2_peaks.out1 [2024-01-01 14:42:08,896] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M06_read_MACS2_peaks.out1 [2024-01-01 14:42:08,900] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M06_read_MACS2_peaks.out1 [2024-01-01 14:42:08,900] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M06_read_MACS2_peaks.out1 [2024-01-01 14:42:08,900] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M06_read_MACS2_peaks.out1 [2024-01-01 14:42:08,900] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M06_read_MACS2_peaks.out1 [2024-01-01 14:42:08,900] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M06_read_MACS2_peaks.out1 [2024-01-01 14:42:08,900] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M06_read_MACS2_peaks.out1 [2024-01-01 14:42:08,900] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M06_read_MACS2_peaks.out1 [2024-01-01 14:42:08,901] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M06_read_MACS2_peaks.out1 [2024-01-01 14:42:08,914] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M06_read_MACS2_peaks.out1 [2024-01-01 14:42:09,616] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M06_read_MACS2_peaks.out1 [2024-01-01 14:42:09,728] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:09,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:09,733] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:09,739] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:09,739] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:09,739] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:09,739] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:09,739] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:09,739] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:09,739] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:09,739] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:09,756] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:10,494] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M06_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:10,534] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2024-01-01 14:42:10,534] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2024-01-01 14:42:10,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:10,541] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:10,552] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_narrow_MACS2_peaks.narrowPeak_common.bed [2024-01-01 14:42:10,552] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2024-01-01 14:42:10,552] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_narrow_MACS2_peaks.narrowPeak_unique.bed [2024-01-01 14:42:10,552] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2024-01-01 14:42:10,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_hist.pdf [2024-01-01 14:42:10,557] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M06_metrics [2024-01-01 14:42:10,559] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M06_metrics [2024-01-01 14:42:10,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M06_metrics [2024-01-01 14:42:10,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M06_metrics [2024-01-01 14:42:10,578] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M06_metrics [2024-01-01 14:42:10,589] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_extradetailed.R [2024-01-01 14:42:10,592] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: process_output_extradetailed.R [2024-01-01 14:42:10,593] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_extradetailed.R [2024-01-01 14:42:10,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: process_output_extradetailed.R [2024-01-01 14:42:10,612] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: process_output_extradetailed.R [2024-01-01 14:42:10,616] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: run.sh [2024-01-01 14:42:10,618] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: run.sh [2024-01-01 14:42:10,622] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: run.sh [2024-01-01 14:42:10,635] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_compact.R [2024-01-01 14:42:10,637] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_compact.R [2024-01-01 14:42:10,654] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_detailed.R [2024-01-01 14:42:10,656] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_detailed.R [2024-01-01 14:42:10,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: process_output_detailed.R [2024-01-01 14:42:10,680] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220_M05_CKDL230041222-1A_HHWMJDSX7_L1_R2.fastq.gz [2024-01-01 14:42:10,683] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220_M05_CKDL230041222-1A_HHWMJDSX7_L1_R1.fastq.gz [2024-01-01 14:42:10,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_alignments.bam [2024-01-01 14:42:10,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_alignments.bam.bai [2024-01-01 14:42:10,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_sorted_mapped.bam [2024-01-01 14:42:10,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_sorted_mapped.bam.bai [2024-01-01 14:42:10,716] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:42:10,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:42:10,719] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:42:10,724] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:42:10,724] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:42:10,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:42:10,725] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:42:10,725] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:42:10,725] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:42:10,725] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:42:10,725] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:42:10,725] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:42:10,725] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:42:12,987] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:42:13,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_filtered_StrgtPks_sorted.bam [2024-01-01 14:42:13,115] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_StrgtPksRm_tab.bed [2024-01-01 14:42:13,116] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_StrgtPks_tab.bed [2024-01-01 14:42:13,116] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_filtered_StrgtPks.bam.bai [2024-01-01 14:42:13,116] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_filtered_StrgtPks.bam [2024-01-01 14:42:13,116] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_filtered_StrgtPks_sorted.bam.bai [2024-01-01 14:42:13,121] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05_RiPPM_norm.bw [2024-01-01 14:42:13,124] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05_RiPPM_norm.bw [2024-01-01 14:42:13,124] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05_RiPPM_norm.bw [2024-01-01 14:42:13,127] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M05_RiPPM_norm.bw [2024-01-01 14:42:13,127] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M05_RiPPM_norm.bw [2024-01-01 14:42:13,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05_RiPPM_norm.bw [2024-01-01 14:42:13,127] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M05_RiPPM_norm.bw [2024-01-01 14:42:13,127] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M05_RiPPM_norm.bw [2024-01-01 14:42:13,127] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M05_RiPPM_norm.bw [2024-01-01 14:42:13,128] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M05_RiPPM_norm.bw [2024-01-01 14:42:13,128] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M05_RiPPM_norm.bw [2024-01-01 14:42:13,128] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M05_RiPPM_norm.bw [2024-01-01 14:42:13,133] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05_RiPPM_norm.bw [2024-01-01 14:42:13,134] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_hist.pdf [2024-01-01 14:42:13,139] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05_metrics [2024-01-01 14:42:13,142] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05_metrics [2024-01-01 14:42:13,142] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05_metrics [2024-01-01 14:42:13,148] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05_metrics [2024-01-01 14:42:13,162] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05_metrics [2024-01-01 14:42:13,190] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:13,194] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:13,195] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:13,202] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:13,202] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:13,840] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:13,910] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05-W400-normalized.wig [2024-01-01 14:42:13,915] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05-W400-normalized.wig [2024-01-01 14:42:13,915] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05-W400-normalized.wig [2024-01-01 14:42:13,921] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M05-W400-normalized.wig [2024-01-01 14:42:13,921] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M05-W400-normalized.wig [2024-01-01 14:42:13,921] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05-W400-normalized.wig [2024-01-01 14:42:13,921] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M05-W400-normalized.wig [2024-01-01 14:42:13,921] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M05-W400-normalized.wig [2024-01-01 14:42:13,922] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M05-W400-normalized.wig [2024-01-01 14:42:13,922] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M05-W400-normalized.wig [2024-01-01 14:42:13,922] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M05-W400-normalized.wig [2024-01-01 14:42:14,053] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M05-W400-normalized.wig [2024-01-01 14:42:19,917] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05-W400-normalized.wig [2024-01-01 14:42:20,289] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100.scoreisland [2024-01-01 14:42:20,291] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100.scoreisland [2024-01-01 14:42:20,291] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100.scoreisland [2024-01-01 14:42:20,296] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100.scoreisland [2024-01-01 14:42:20,296] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100.scoreisland [2024-01-01 14:42:20,416] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100.scoreisland [2024-01-01 14:42:20,423] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05-W400-G2400-E100-islandfiltered.bed [2024-01-01 14:42:20,428] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:20,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:20,431] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:20,435] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:20,435] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:20,441] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:20,443] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05-1-removed.bed [2024-01-01 14:42:20,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2024-01-01 14:42:20,452] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05_read_SICER.out1 [2024-01-01 14:42:20,455] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05_read_SICER.out1 [2024-01-01 14:42:20,455] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05_read_SICER.out1 [2024-01-01 14:42:20,459] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M05_read_SICER.out1 [2024-01-01 14:42:20,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05_read_SICER.out1 [2024-01-01 14:42:20,589] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05_read_SICER.out1 [2024-01-01 14:42:20,659] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05-W400.graph [2024-01-01 14:42:20,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05-W400.graph [2024-01-01 14:42:20,664] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05-W400.graph [2024-01-01 14:42:20,670] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M05-W400.graph [2024-01-01 14:42:20,671] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M05-W400.graph [2024-01-01 14:42:20,671] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05-W400.graph [2024-01-01 14:42:20,671] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M05-W400.graph [2024-01-01 14:42:20,671] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M05-W400.graph [2024-01-01 14:42:20,671] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M05-W400.graph [2024-01-01 14:42:20,671] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M05-W400.graph [2024-01-01 14:42:20,671] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M05-W400.graph [2024-01-01 14:42:20,671] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M05-W400.graph [2024-01-01 14:42:20,671] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M05-W400.graph [2024-01-01 14:42:26,788] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05-W400.graph [2024-01-01 14:42:27,225] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2024-01-01 14:42:27,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05-W400-G2400-E100.scoreisland_unique.bed [2024-01-01 14:42:27,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05-W400-G2400-E100.scoreisland_common.bed [2024-01-01 14:42:27,230] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:27,233] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:27,244] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2024-01-01 14:42:27,244] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2024-01-01 14:42:27,244] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2024-01-01 14:42:27,276] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:27,279] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:27,280] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:27,285] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:27,285] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:27,285] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:27,285] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:27,285] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:27,286] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:27,286] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:27,286] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:27,293] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:27,602] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:27,620] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:42:27,649] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:27,653] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:27,653] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:27,658] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:27,658] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:27,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:27,658] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:27,658] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:27,658] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:27,658] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:27,659] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:27,666] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:27,999] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:28,035] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_narrow_MACS2_summits.bed [2024-01-01 14:42:28,065] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:28,068] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:28,069] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:28,075] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M05_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:28,075] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:28,118] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:28,125] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:28,127] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:28,127] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:28,131] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:28,136] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:28,138] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_broad_MACS2_peaks.broadPeak.bed [2024-01-01 14:42:28,142] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:28,144] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:28,150] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:28,154] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:28,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:28,160] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:28,167] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05_read_MACS2_peaks.out1 [2024-01-01 14:42:28,169] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05_read_MACS2_peaks.out1 [2024-01-01 14:42:28,169] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05_read_MACS2_peaks.out1 [2024-01-01 14:42:28,174] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M05_read_MACS2_peaks.out1 [2024-01-01 14:42:28,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05_read_MACS2_peaks.out1 [2024-01-01 14:42:28,217] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05_read_MACS2_peaks.out1 [2024-01-01 14:42:28,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2024-01-01 14:42:28,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2024-01-01 14:42:28,226] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:28,228] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:28,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_narrow_MACS2_peaks.narrowPeak_unique.bed [2024-01-01 14:42:28,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2024-01-01 14:42:28,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2024-01-01 14:42:28,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_narrow_MACS2_peaks.narrowPeak_common.bed [2024-01-01 14:42:28,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220_M02_CKDL230041222-1A_HHWMJDSX7_L1_R1.fastq.gz [2024-01-01 14:42:28,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220_M02_CKDL230041222-1A_HHWMJDSX7_L1_R2.fastq.gz [2024-01-01 14:42:28,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_sorted_mapped.bam.bai [2024-01-01 14:42:28,292] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_alignments.bam [2024-01-01 14:42:28,294] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_sorted_mapped.bam [2024-01-01 14:42:28,294] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_alignments.bam.bai [2024-01-01 14:42:28,299] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:42:28,302] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:42:28,303] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:42:28,310] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:42:28,310] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:42:28,310] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:42:28,311] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:42:28,311] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:42:28,311] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:42:28,311] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:42:28,311] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:42:28,311] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:42:28,311] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:42:30,562] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:42:30,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_filtered_StrgtPks.bam.bai [2024-01-01 14:42:30,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_filtered_StrgtPks_sorted.bam [2024-01-01 14:42:30,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_StrgtPksRm_tab.bed [2024-01-01 14:42:30,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_filtered_StrgtPks.bam [2024-01-01 14:42:30,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_filtered_StrgtPks_sorted.bam.bai [2024-01-01 14:42:30,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_StrgtPks_tab.bed [2024-01-01 14:42:30,698] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:30,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:30,701] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:30,705] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:30,705] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:30,711] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:30,712] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02-W400-G2400-E100-islandfiltered.bed [2024-01-01 14:42:30,716] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100.scoreisland [2024-01-01 14:42:30,718] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100.scoreisland [2024-01-01 14:42:30,718] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100.scoreisland [2024-01-01 14:42:30,723] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100.scoreisland [2024-01-01 14:42:30,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100.scoreisland [2024-01-01 14:42:31,009] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100.scoreisland [2024-01-01 14:42:31,087] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:31,092] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:31,092] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:31,099] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:31,099] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:31,099] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:31,099] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:31,099] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:31,099] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:31,099] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:31,099] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:31,229] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:36,839] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M02-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:37,182] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2024-01-01 14:42:37,182] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02-1-removed.bed [2024-01-01 14:42:37,187] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M02_read_SICER.out1 [2024-01-01 14:42:37,189] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M02_read_SICER.out1 [2024-01-01 14:42:37,189] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M02_read_SICER.out1 [2024-01-01 14:42:37,193] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M02_read_SICER.out1 [2024-01-01 14:42:37,193] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M02_read_SICER.out1 [2024-01-01 14:42:37,194] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M02_read_SICER.out1 [2024-01-01 14:42:37,194] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M02_read_SICER.out1 [2024-01-01 14:42:37,194] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M02_read_SICER.out1 [2024-01-01 14:42:37,194] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M02_read_SICER.out1 [2024-01-01 14:42:37,194] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M02_read_SICER.out1 [2024-01-01 14:42:37,470] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M02_read_SICER.out1 [2024-01-01 14:42:37,486] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2024-01-01 14:42:37,490] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:37,492] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:37,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02-W400-G2400-E100.scoreisland_common.bed [2024-01-01 14:42:37,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02-W400-G2400-E100.scoreisland_unique.bed [2024-01-01 14:42:37,504] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2024-01-01 14:42:37,504] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2024-01-01 14:42:37,504] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2024-01-01 14:42:37,518] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M02_metrics [2024-01-01 14:42:37,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M02_metrics [2024-01-01 14:42:37,523] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M02_metrics [2024-01-01 14:42:37,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M02_metrics [2024-01-01 14:42:37,545] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M02_metrics [2024-01-01 14:42:37,546] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_hist.pdf [2024-01-01 14:42:37,547] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_narrow_MACS2_summits.bed [2024-01-01 14:42:37,552] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M02_read_MACS2_peaks.out1 [2024-01-01 14:42:37,555] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M02_read_MACS2_peaks.out1 [2024-01-01 14:42:37,555] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M02_read_MACS2_peaks.out1 [2024-01-01 14:42:37,559] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M02_read_MACS2_peaks.out1 [2024-01-01 14:42:37,559] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M02_read_MACS2_peaks.out1 [2024-01-01 14:42:37,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M02_read_MACS2_peaks.out1 [2024-01-01 14:42:37,560] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M02_read_MACS2_peaks.out1 [2024-01-01 14:42:37,560] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M02_read_MACS2_peaks.out1 [2024-01-01 14:42:37,560] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M02_read_MACS2_peaks.out1 [2024-01-01 14:42:37,560] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M02_read_MACS2_peaks.out1 [2024-01-01 14:42:37,560] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M02_read_MACS2_peaks.out1 [2024-01-01 14:42:37,584] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M02_read_MACS2_peaks.out1 [2024-01-01 14:42:38,231] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M02_read_MACS2_peaks.out1 [2024-01-01 14:42:38,311] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:38,315] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:38,316] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:38,322] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:38,322] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:38,323] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:38,323] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:38,323] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:38,323] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:38,323] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:38,323] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:38,341] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:39,124] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:39,208] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:39,211] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:39,211] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:39,217] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:39,217] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:39,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:39,218] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:39,218] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:39,218] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:39,218] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:39,218] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:39,236] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:40,105] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:40,156] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:40,163] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:40,164] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:40,167] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:40,168] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:40,174] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:40,180] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:40,183] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:40,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:40,189] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:40,189] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:40,189] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:40,189] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:40,189] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:40,190] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:40,190] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:40,195] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M02_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:40,218] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_broad_MACS2_peaks.broadPeak.bed [2024-01-01 14:42:40,285] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:40,289] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:40,290] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:40,295] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:40,295] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:40,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:40,295] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:40,295] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:40,295] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:40,295] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:40,295] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:40,311] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:41,000] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M02_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:41,041] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:42:41,041] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2024-01-01 14:42:41,042] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2024-01-01 14:42:41,046] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:41,048] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:41,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_narrow_MACS2_peaks.narrowPeak_unique.bed [2024-01-01 14:42:41,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2024-01-01 14:42:41,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2024-01-01 14:42:41,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_narrow_MACS2_peaks.narrowPeak_common.bed [2024-01-01 14:42:41,070] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220_M04_CKDL230041222-1A_HHWMJDSX7_L1_R1.fastq.gz [2024-01-01 14:42:41,072] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220_M04_CKDL230041222-1A_HHWMJDSX7_L1_R2.fastq.gz [2024-01-01 14:42:41,072] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_alignments.bam [2024-01-01 14:42:41,073] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_sorted_mapped.bam.bai [2024-01-01 14:42:41,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_sorted_mapped.bam [2024-01-01 14:42:41,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_alignments.bam.bai [2024-01-01 14:42:41,116] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:42:41,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:42:41,119] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:42:41,124] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:42:41,124] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:42:41,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:42:41,125] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:42:41,125] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:42:41,125] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:42:41,125] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:42:41,125] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:42:41,125] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:42:41,125] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:42:43,397] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:42:43,537] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:43,540] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:43,541] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:43,546] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:43,546] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:43,546] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:43,547] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:43,547] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:43,547] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:43,547] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:43,716] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:43,732] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M04_read_MACS2_peaks.out1 [2024-01-01 14:42:43,734] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M04_read_MACS2_peaks.out1 [2024-01-01 14:42:43,734] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M04_read_MACS2_peaks.out1 [2024-01-01 14:42:43,740] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M04_read_MACS2_peaks.out1 [2024-01-01 14:42:43,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M04_read_MACS2_peaks.out1 [2024-01-01 14:42:43,913] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M04_read_MACS2_peaks.out1 [2024-01-01 14:42:43,932] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:43,934] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:43,934] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:43,938] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:43,938] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:43,944] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:42:43,973] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:43,977] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:43,977] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:43,983] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:43,983] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:43,983] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:43,984] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:43,984] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:43,984] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:43,984] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:43,984] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:44,004] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:44,937] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:45,017] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:45,020] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:45,020] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:45,023] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:45,024] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:45,035] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M04_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:45,037] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_narrow_MACS2_summits.bed [2024-01-01 14:42:45,070] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:45,074] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:45,074] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:45,080] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:45,080] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:45,081] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:45,081] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:45,081] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:45,081] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:45,081] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:45,081] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:45,105] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:45,968] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M04_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:46,020] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_broad_MACS2_peaks.broadPeak.bed [2024-01-01 14:42:46,021] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:42:46,022] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2024-01-01 14:42:46,022] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_narrow_MACS2_peaks.narrowPeak_unique.bed [2024-01-01 14:42:46,028] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:46,033] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:46,049] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2024-01-01 14:42:46,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_narrow_MACS2_peaks.narrowPeak_common.bed [2024-01-01 14:42:46,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2024-01-01 14:42:46,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2024-01-01 14:42:46,051] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_filtered_StrgtPks.bam.bai [2024-01-01 14:42:46,051] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_StrgtPks_tab.bed [2024-01-01 14:42:46,057] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_StrgtPksRm_tab.bed [2024-01-01 14:42:46,057] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_filtered_StrgtPks.bam [2024-01-01 14:42:46,057] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_filtered_StrgtPks_sorted.bam.bai [2024-01-01 14:42:46,057] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_filtered_StrgtPks_sorted.bam [2024-01-01 14:42:46,063] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100.scoreisland [2024-01-01 14:42:46,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100.scoreisland [2024-01-01 14:42:46,066] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100.scoreisland [2024-01-01 14:42:46,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100.scoreisland [2024-01-01 14:42:46,150] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100.scoreisland [2024-01-01 14:42:46,165] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M04_read_SICER.out1 [2024-01-01 14:42:46,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M04_read_SICER.out1 [2024-01-01 14:42:46,167] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M04_read_SICER.out1 [2024-01-01 14:42:46,171] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M04_read_SICER.out1 [2024-01-01 14:42:46,171] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M04_read_SICER.out1 [2024-01-01 14:42:46,263] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M04_read_SICER.out1 [2024-01-01 14:42:46,328] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:46,333] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:46,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:46,338] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:46,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:46,339] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:46,339] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:46,339] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:46,339] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:46,339] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:47,160] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:47,206] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04-1-removed.bed [2024-01-01 14:42:47,207] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04-W400-G2400-E100-islandfiltered.bed [2024-01-01 14:42:47,208] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2024-01-01 14:42:47,213] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:47,215] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:47,215] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:47,219] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:47,219] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:47,226] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M04-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:47,227] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04-W400-G2400-E100.scoreisland_common.bed [2024-01-01 14:42:47,227] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2024-01-01 14:42:47,232] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:47,234] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:47,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2024-01-01 14:42:47,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04-W400-G2400-E100.scoreisland_unique.bed [2024-01-01 14:42:47,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2024-01-01 14:42:47,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2024-01-01 14:42:47,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M04_RiPPM_norm.bw [2024-01-01 14:42:47,269] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M04_RiPPM_norm.bw [2024-01-01 14:42:47,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M04_RiPPM_norm.bw [2024-01-01 14:42:47,273] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M04_RiPPM_norm.bw [2024-01-01 14:42:47,273] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M04_RiPPM_norm.bw [2024-01-01 14:42:47,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M04_RiPPM_norm.bw [2024-01-01 14:42:47,273] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M04_RiPPM_norm.bw [2024-01-01 14:42:47,273] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M04_RiPPM_norm.bw [2024-01-01 14:42:47,273] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M04_RiPPM_norm.bw [2024-01-01 14:42:47,273] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M04_RiPPM_norm.bw [2024-01-01 14:42:47,273] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M04_RiPPM_norm.bw [2024-01-01 14:42:47,273] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M04_RiPPM_norm.bw [2024-01-01 14:42:47,273] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M04_RiPPM_norm.bw [2024-01-01 14:42:47,279] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M04_RiPPM_norm.bw [2024-01-01 14:42:47,284] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M04_metrics [2024-01-01 14:42:47,286] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M04_metrics [2024-01-01 14:42:47,287] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M04_metrics [2024-01-01 14:42:47,291] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M04_metrics [2024-01-01 14:42:47,305] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M04_metrics [2024-01-01 14:42:47,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_hist.pdf [2024-01-01 14:42:47,360] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: index [2024-01-01 14:42:47,363] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: index [2024-01-01 14:42:47,364] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: index [2024-01-01 14:42:47,371] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: index [2024-01-01 14:42:47,379] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: index [2024-01-01 14:42:47,517] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2024-01-01 14:42:47,521] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2024-01-01 14:42:47,522] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2024-01-01 14:42:47,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2024-01-01 14:42:47,539] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2024-01-01 14:42:47,546] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-commit.sample [2024-01-01 14:42:47,548] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-commit.sample [2024-01-01 14:42:47,572] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: update.sample [2024-01-01 14:42:47,575] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: update.sample [2024-01-01 14:42:47,580] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: update.sample [2024-01-01 14:42:47,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: push-to-checkout.sample [2024-01-01 14:42:47,599] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: push-to-checkout.sample [2024-01-01 14:42:47,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: push-to-checkout.sample [2024-01-01 14:42:47,638] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-push.sample [2024-01-01 14:42:47,640] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-push.sample [2024-01-01 14:42:47,694] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-rebase.sample [2024-01-01 14:42:47,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pre-rebase.sample [2024-01-01 14:42:47,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-rebase.sample [2024-01-01 14:42:47,705] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pre-rebase.sample [2024-01-01 14:42:47,717] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pre-rebase.sample [2024-01-01 14:42:47,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: prepare-commit-msg.sample [2024-01-01 14:42:47,726] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: prepare-commit-msg.sample [2024-01-01 14:42:47,895] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.pack [2024-01-01 14:42:47,899] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.pack [2024-01-01 14:42:47,899] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.pack [2024-01-01 14:42:47,905] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.pack [2024-01-01 14:42:47,905] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.pack [2024-01-01 14:42:47,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.pack [2024-01-01 14:42:47,905] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.pack [2024-01-01 14:42:47,905] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.pack [2024-01-01 14:42:47,906] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.pack [2024-01-01 14:42:47,906] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.pack [2024-01-01 14:42:47,906] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.pack [2024-01-01 14:42:47,906] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.pack [2024-01-01 14:42:47,906] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.pack [2024-01-01 14:42:47,913] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.pack [2024-01-01 14:42:47,923] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.idx [2024-01-01 14:42:47,926] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.idx [2024-01-01 14:42:47,926] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.idx [2024-01-01 14:42:47,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.idx [2024-01-01 14:42:47,936] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pack-92a983a1c8e42e97e7512cf0664364d765f8bc1a.idx [2024-01-01 14:42:47,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220_M01_CKDL230041222-1A_HHWMJDSX7_L1_R2.fastq.gz [2024-01-01 14:42:47,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220_M01_CKDL230041222-1A_HHWMJDSX7_L1_R1.fastq.gz [2024-01-01 14:42:47,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_alignments.bam.bai [2024-01-01 14:42:48,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_sorted_mapped.bam [2024-01-01 14:42:48,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_alignments.bam [2024-01-01 14:42:48,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_sorted_mapped.bam.bai [2024-01-01 14:42:48,008] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:42:48,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:42:48,011] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:42:48,016] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:42:48,016] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:42:48,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:42:48,016] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:42:48,016] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:42:48,016] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:42:48,016] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:42:48,016] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:42:48,016] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:42:48,016] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:42:50,292] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:42:50,426] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_filtered_StrgtPks.bam [2024-01-01 14:42:50,426] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_filtered_StrgtPks_sorted.bam [2024-01-01 14:42:50,426] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_StrgtPksRm_tab.bed [2024-01-01 14:42:50,427] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_filtered_StrgtPks.bam.bai [2024-01-01 14:42:50,427] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_StrgtPks_tab.bed [2024-01-01 14:42:50,427] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_filtered_StrgtPks_sorted.bam.bai [2024-01-01 14:42:50,455] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:50,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:50,458] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:50,463] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:50,463] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:50,463] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:50,463] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:50,463] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:50,463] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:50,463] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:50,463] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:50,563] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:54,998] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100-islandfiltered-normalized.wig [2024-01-01 14:42:55,297] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:55,299] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:55,299] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:55,302] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:55,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:55,308] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100.scoreisland.bb [2024-01-01 14:42:55,310] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2024-01-01 14:42:55,310] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01-W400-G2400-E100-islandfiltered.bed [2024-01-01 14:42:55,310] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01-1-removed.bed [2024-01-01 14:42:55,317] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100.scoreisland [2024-01-01 14:42:55,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100.scoreisland [2024-01-01 14:42:55,320] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100.scoreisland [2024-01-01 14:42:55,326] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100.scoreisland [2024-01-01 14:42:55,326] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100.scoreisland [2024-01-01 14:42:55,687] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M01-W400-G2400-E100.scoreisland [2024-01-01 14:42:55,712] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M01_read_SICER.out1 [2024-01-01 14:42:55,714] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M01_read_SICER.out1 [2024-01-01 14:42:55,714] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M01_read_SICER.out1 [2024-01-01 14:42:55,719] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M01_read_SICER.out1 [2024-01-01 14:42:55,719] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M01_read_SICER.out1 [2024-01-01 14:42:55,719] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M01_read_SICER.out1 [2024-01-01 14:42:55,719] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M01_read_SICER.out1 [2024-01-01 14:42:55,720] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M01_read_SICER.out1 [2024-01-01 14:42:55,720] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M01_read_SICER.out1 [2024-01-01 14:42:55,720] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M01_read_SICER.out1 [2024-01-01 14:42:56,111] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M01_read_SICER.out1 [2024-01-01 14:42:56,131] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2024-01-01 14:42:56,132] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2024-01-01 14:42:56,142] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:56,147] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2024-01-01 14:42:56,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2024-01-01 14:42:56,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2024-01-01 14:42:56,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01-W400-G2400-E100.scoreisland_common.bed [2024-01-01 14:42:56,166] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01-W400-G2400-E100.scoreisland_unique.bed [2024-01-01 14:42:56,170] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M01_metrics [2024-01-01 14:42:56,172] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M01_metrics [2024-01-01 14:42:56,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M01_metrics [2024-01-01 14:42:56,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M01_metrics [2024-01-01 14:42:56,215] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M01_metrics [2024-01-01 14:42:56,217] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_hist.pdf [2024-01-01 14:42:56,225] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M01_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:56,228] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M01_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:56,228] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M01_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:56,234] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M01_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:56,234] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M01_narrow_MACS2_peaks.narrowPeak.bb [2024-01-01 14:42:56,244] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 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File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:57,431] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.gappedPeak [2024-01-01 14:42:57,489] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:42:57,546] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:57,604] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:57,604] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.broadPeak [2024-01-01 14:42:57,667] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: 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multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M01_read_MACS2_peaks.out1 [2024-01-01 14:42:58,739] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M01_read_MACS2_peaks.out1 [2024-01-01 14:42:58,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M01_read_MACS2_peaks.out1 [2024-01-01 14:42:58,740] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M01_read_MACS2_peaks.out1 [2024-01-01 14:42:58,740] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M01_read_MACS2_peaks.out1 [2024-01-01 14:42:58,740] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M01_read_MACS2_peaks.out1 [2024-01-01 14:42:58,740] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M01_read_MACS2_peaks.out1 [2024-01-01 14:42:58,740] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M01_read_MACS2_peaks.out1 [2024-01-01 14:42:58,755] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M01_read_MACS2_peaks.out1 [2024-01-01 14:42:59,545] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M01_read_MACS2_peaks.out1 [2024-01-01 14:42:59,589] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_broad_MACS2_peaks.broadPeak.bed [2024-01-01 14:42:59,617] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M01_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:59,621] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M01_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:59,621] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M01_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:59,628] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M01_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:59,628] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M01_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:59,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M01_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:59,628] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M01_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:59,628] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M01_narrow_MACS2_peaks.narrowPeak [2024-01-01 14:42:59,628] 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multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:43:00,497] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:43:00,501] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:43:00,501] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:43:00,501] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:43:00,501] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:43:00,501] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:43:00,501] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:43:00,501] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:43:00,506] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M01_broad_MACS2_peaks.broadPeak.bb [2024-01-01 14:43:00,507] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2024-01-01 14:43:00,507] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_narrow_MACS2_peaks.narrowPeak_common.bed [2024-01-01 14:43:00,512] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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[2024-01-01 14:43:00,542] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:00,546] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:00,556] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:00,563] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_diffReps.sh [2024-01-01 14:43:00,565] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_diffReps.sh [2024-01-01 14:43:00,565] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_diffReps.sh [2024-01-01 14:43:00,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_diffReps.sh [2024-01-01 14:43:00,577] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_diffReps.sh [2024-01-01 14:43:00,584] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-01-01 14:43:00,587] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-01-01 14:43:00,591] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-01-01 14:43:00,606] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffReps.qsub [2024-01-01 14:43:00,608] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffReps.qsub [2024-01-01 14:43:00,609] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffReps.qsub [2024-01-01 14:43:00,613] multiqc [DEBUG ] File 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multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:00,711] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:00,716] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:00,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G220_SG_CHIPSEQ_G220M06.o3375672 [2024-01-01 14:43:00,741] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G220_SG_CHIPSEQ_G220M06.o3375672 [2024-01-01 14:43:00,742] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G220_SG_CHIPSEQ_G220M06.o3375672 [2024-01-01 14:43:00,747] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern 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] Ignoring file as matched an ignore pattern: diffReps_Hotspots_UCSC_G220_Male_vs_G220_Female_MACS2_RIPPM_1000.bed [2024-01-01 14:43:02,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: UCSC_UNFILTERED_track_G220_Male_vs_G220_Female_MACS2_RIPPM_1000.bed [2024-01-01 14:43:02,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: UCSC_FILTERED_track_G220_Male_vs_G220_Female_MACS2_RIPPM_1000.bed [2024-01-01 14:43:02,941] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_RIPPM_1000.xlsx [2024-01-01 14:43:02,943] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_RIPPM_1000.xlsx [2024-01-01 14:43:02,943] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_RIPPM_1000.xlsx [2024-01-01 14:43:02,947] multiqc [DEBUG ] File ignored by 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FDR_Barchart_G220_Female_1_2ul_body_vs_G220_Female_MACS2_DIFFREPS_1000.pdf [2024-01-01 14:43:03,662] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Barchart_G220_Female_1_2ul_body_vs_G220_Female_MACS2_DIFFREPS_1000.pdf [2024-01-01 14:43:03,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:03,687] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:03,688] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:03,691] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:03,702] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:03,707] multiqc [DEBUG ] File ignored by 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[2024-01-01 14:43:05,166] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_Hotspots_UCSC_G220_Male_vs_G220_Female_1_2ul_body_MACS2_DIFFREPS_1000.bed [2024-01-01 14:43:05,166] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: UCSC_FILTERED_track_G220_Male_vs_G220_Female_1_2ul_body_MACS2_DIFFREPS_1000.bed [2024-01-01 14:43:05,166] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: UCSC_UNFILTERED_track_G220_Male_vs_G220_Female_1_2ul_body_MACS2_DIFFREPS_1000.bed [2024-01-01 14:43:05,171] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_1_2ul_body_DIFFREPS_1000.xlsx [2024-01-01 14:43:05,173] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_1_2ul_body_DIFFREPS_1000.xlsx [2024-01-01 14:43:05,174] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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[2024-01-01 14:43:05,178] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_1_2ul_body_DIFFREPS_1000.xlsx [2024-01-01 14:43:05,179] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_1_2ul_body_DIFFREPS_1000.xlsx [2024-01-01 14:43:05,179] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_1_2ul_body_DIFFREPS_1000.xlsx [2024-01-01 14:43:05,179] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_1_2ul_body_DIFFREPS_1000.xlsx [2024-01-01 14:43:05,184] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_1_2ul_body_DIFFREPS_1000.xlsx [2024-01-01 14:43:05,185] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Barchart_G220_Male_vs_G220_Female_1_2ul_body_MACS2_DIFFREPS_1000.pdf [2024-01-01 14:43:05,185] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Histograms_G220_Male_vs_G220_Female_1_2ul_body_MACS2_DIFFREPS_1000.pdf [2024-01-01 14:43:05,185] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: FDR_Barchart_G220_Male_vs_G220_Female_1_2ul_body_MACS2_DIFFREPS_1000.pdf [2024-01-01 14:43:05,289] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-01-01 14:43:05,291] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-01-01 14:43:05,325] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:05,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:05,328] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:05,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:05,342] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:05,393] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_10_G220_SG_CHIPSEQ_diffReps_5.o3376974 [2024-01-01 14:43:05,398] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_10_G220_SG_CHIPSEQ_diffReps_5.o3376974 [2024-01-01 14:43:05,398] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_10_G220_SG_CHIPSEQ_diffReps_5.o3376974 [2024-01-01 14:43:05,405] multiqc [DEBUG ] File ignored by longranger/invocation because 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14:43:05,644] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: diffReps_G220_Female_1_2ul_body.vs.G220_Female [2024-01-01 14:43:05,644] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: diffReps_G220_Female_1_2ul_body.vs.G220_Female [2024-01-01 14:43:05,644] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: diffReps_G220_Female_1_2ul_body.vs.G220_Female [2024-01-01 14:43:05,644] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: diffReps_G220_Female_1_2ul_body.vs.G220_Female [2024-01-01 14:43:05,649] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: diffReps_G220_Female_1_2ul_body.vs.G220_Female [2024-01-01 14:43:05,882] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffReps_G220_Female_1_2ul_body.vs.G220_Female [2024-01-01 14:43:05,931] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffReps_G220_Female_1_2ul_body.vs.G220_Female.hotspot [2024-01-01 14:43:05,934] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffReps_G220_Female_1_2ul_body.vs.G220_Female.hotspot [2024-01-01 14:43:05,934] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffReps_G220_Female_1_2ul_body.vs.G220_Female.hotspot [2024-01-01 14:43:05,944] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffReps_G220_Female_1_2ul_body.vs.G220_Female.hotspot [2024-01-01 14:43:05,966] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffReps_G220_Female_1_2ul_body.vs.G220_Female.hotspot [2024-01-01 14:43:05,980] multiqc [DEBUG ] File ignored by ccs/v4 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[2024-01-01 14:43:05,993] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: diffReps_G220_Female_1_2ul_body.vs.G220_Female.annotated [2024-01-01 14:43:06,293] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffReps_G220_Female_1_2ul_body.vs.G220_Female.annotated [2024-01-01 14:43:06,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_Hotspots_UCSC_G220_Female_1_2ul_body_vs_G220_Female_MACS2_RIPPM_1000.bed [2024-01-01 14:43:06,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: UCSC_FILTERED_track_G220_Female_1_2ul_body_vs_G220_Female_MACS2_RIPPM_1000.bed [2024-01-01 14:43:06,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: UCSC_UNFILTERED_track_G220_Female_1_2ul_body_vs_G220_Female_MACS2_RIPPM_1000.bed [2024-01-01 14:43:06,313] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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[2024-01-01 14:43:06,320] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: Summary_G220_Female_1_2ul_body_vs_G220_Female_RIPPM_1000.xlsx [2024-01-01 14:43:06,320] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: Summary_G220_Female_1_2ul_body_vs_G220_Female_RIPPM_1000.xlsx [2024-01-01 14:43:06,320] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: Summary_G220_Female_1_2ul_body_vs_G220_Female_RIPPM_1000.xlsx [2024-01-01 14:43:06,320] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: Summary_G220_Female_1_2ul_body_vs_G220_Female_RIPPM_1000.xlsx [2024-01-01 14:43:06,320] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: Summary_G220_Female_1_2ul_body_vs_G220_Female_RIPPM_1000.xlsx [2024-01-01 14:43:06,320] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: Summary_G220_Female_1_2ul_body_vs_G220_Female_RIPPM_1000.xlsx [2024-01-01 14:43:06,325] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summary_G220_Female_1_2ul_body_vs_G220_Female_RIPPM_1000.xlsx [2024-01-01 14:43:06,326] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Histograms_G220_Female_1_2ul_body_vs_G220_Female_MACS2_RIPPM_1000.pdf [2024-01-01 14:43:06,326] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: FDR_Barchart_G220_Female_1_2ul_body_vs_G220_Female_MACS2_RIPPM_1000.pdf [2024-01-01 14:43:06,326] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Barchart_G220_Female_1_2ul_body_vs_G220_Female_MACS2_RIPPM_1000.pdf [2024-01-01 14:43:06,347] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:06,349] multiqc [DEBUG ] File ignored by 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[2024-01-01 14:43:07,397] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffReps_G220_Male.vs.G220_Female_1_2ul_body.annotated [2024-01-01 14:43:07,399] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffReps_G220_Male.vs.G220_Female_1_2ul_body.annotated [2024-01-01 14:43:07,399] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffReps_G220_Male.vs.G220_Female_1_2ul_body.annotated [2024-01-01 14:43:07,403] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: diffReps_G220_Male.vs.G220_Female_1_2ul_body.annotated [2024-01-01 14:43:07,404] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffReps_G220_Male.vs.G220_Female_1_2ul_body.annotated [2024-01-01 14:43:07,404] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern 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[2024-01-01 14:43:07,849] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: FDR_Barchart_G220_Male_vs_G220_Female_1_2ul_body_MACS2_RIPPM_1000.pdf [2024-01-01 14:43:07,876] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:07,879] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:07,879] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:07,883] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:07,892] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:07,956] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_diffReps.sh 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exceeded search pattern filesize limit: diffReps_G220_Male.vs.G220_Female.annotated [2024-01-01 14:43:08,282] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffReps_G220_Male.vs.G220_Female.annotated [2024-01-01 14:43:08,295] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffReps_G220_Male.vs.G220_Female.hotspot [2024-01-01 14:43:08,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffReps_G220_Male.vs.G220_Female.hotspot [2024-01-01 14:43:08,298] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffReps_G220_Male.vs.G220_Female.hotspot [2024-01-01 14:43:08,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffReps_G220_Male.vs.G220_Female.hotspot [2024-01-01 14:43:08,313] multiqc [DEBUG ] File ignored by nanostat because it exceeded 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diffReps_G220_Male.vs.G220_Female [2024-01-01 14:43:08,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: UCSC_FILTERED_track_G220_Male_vs_G220_Female_MACS2_DIFFREPRS_1000.bed [2024-01-01 14:43:08,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: UCSC_UNFILTERED_track_G220_Male_vs_G220_Female_MACS2_DIFFREPRS_1000.bed [2024-01-01 14:43:08,426] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: diffReps_Hotspots_UCSC_G220_Male_vs_G220_Female_MACS2_DIFFREPRS_1000.bed [2024-01-01 14:43:08,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_DIFFREPRS_1000.xlsx [2024-01-01 14:43:08,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_DIFFREPRS_1000.xlsx [2024-01-01 14:43:08,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_DIFFREPRS_1000.xlsx [2024-01-01 14:43:08,439] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_DIFFREPRS_1000.xlsx [2024-01-01 14:43:08,439] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_DIFFREPRS_1000.xlsx [2024-01-01 14:43:08,448] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summary_G220_Male_vs_G220_Female_DIFFREPRS_1000.xlsx [2024-01-01 14:43:08,449] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Barchart_G220_Male_vs_G220_Female_MACS2_DIFFREPRS_1000.pdf [2024-01-01 14:43:08,450] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: FDR_Barchart_G220_Male_vs_G220_Female_MACS2_DIFFREPRS_1000.pdf [2024-01-01 14:43:08,450] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Histograms_G220_Male_vs_G220_Female_MACS2_DIFFREPRS_1000.pdf [2024-01-01 14:43:08,476] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2024-01-01 14:43:08,478] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2024-01-01 14:43:08,478] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2024-01-01 14:43:08,482] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2024-01-01 14:43:08,513] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 03_Run_Pipeline.sh [2024-01-01 14:43:08,520] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffreps_parser.sh [2024-01-01 14:43:08,523] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffreps_parser.sh [2024-01-01 14:43:08,527] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffreps_parser.sh [2024-01-01 14:43:08,553] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2024-01-01 14:43:08,556] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2024-01-01 14:43:08,557] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2024-01-01 14:43:08,564] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2024-01-01 14:43:08,594] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Pipeline_Version_History.txt [2024-01-01 14:43:08,600] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2024-01-01 14:43:08,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2024-01-01 14:43:08,602] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2024-01-01 14:43:08,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2024-01-01 14:43:08,621] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 01_Pipeline_Setup.sh [2024-01-01 14:43:08,665] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:08,667] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:08,668] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:08,672] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:08,684] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:08,691] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2024-01-01 14:43:08,693] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2024-01-01 14:43:08,699] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2024-01-01 14:43:08,719] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M06.o3376747 [2024-01-01 14:43:08,721] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M06.o3376747 [2024-01-01 14:43:08,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M06.o3376747 [2024-01-01 14:43:08,738] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M02.o3376743 [2024-01-01 14:43:08,741] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M02.o3376743 [2024-01-01 14:43:08,745] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M02.o3376743 [2024-01-01 14:43:08,758] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M05.o3376746 [2024-01-01 14:43:08,760] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M05.o3376746 [2024-01-01 14:43:08,765] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M05.o3376746 [2024-01-01 14:43:08,805] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2024-01-01 14:43:08,807] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2024-01-01 14:43:08,807] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2024-01-01 14:43:08,811] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2024-01-01 14:43:08,841] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2024-01-01 14:43:08,848] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-01-01 14:43:08,851] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-01-01 14:43:08,855] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-01-01 14:43:08,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M01.o3376742 [2024-01-01 14:43:08,875] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M01.o3376742 [2024-01-01 14:43:08,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M01.o3376742 [2024-01-01 14:43:08,894] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-01-01 14:43:08,896] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-01-01 14:43:08,900] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-01-01 14:43:08,914] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M04.o3376745 [2024-01-01 14:43:08,916] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M04.o3376745 [2024-01-01 14:43:08,920] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M04.o3376745 [2024-01-01 14:43:08,939] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M03.o3376744 [2024-01-01 14:43:08,941] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M03.o3376744 [2024-01-01 14:43:08,945] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G220_SG_CHIPSEQ_G220M03.o3376744 [2024-01-01 14:43:09,022] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2024-01-01 14:43:09,026] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2024-01-01 14:43:09,027] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2024-01-01 14:43:09,038] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2024-01-01 14:43:09,061] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2024-01-01 14:43:09,101] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:43:09,103] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:43:09,103] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:43:09,107] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:43:09,107] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:43:09,107] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:43:09,107] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:43:09,107] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:43:09,107] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:43:09,107] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:43:09,107] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:43:09,108] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:43:09,108] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:43:11,402] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M04_read_Peak_Union.out1 [2024-01-01 14:43:11,536] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:43:11,539] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:43:11,539] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:43:11,543] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:43:11,544] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:43:11,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:43:11,544] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:43:11,544] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:43:11,544] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:43:11,544] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:43:11,544] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:43:11,544] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:43:11,544] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:43:13,798] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M01_read_Peak_Union.out1 [2024-01-01 14:43:13,936] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:43:13,939] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:43:13,939] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:43:13,945] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:43:13,946] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:43:13,946] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:43:13,946] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:43:13,946] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:43:13,946] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:43:13,946] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:43:13,946] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:43:13,946] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:43:13,947] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:43:16,304] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M03_read_Peak_Union.out1 [2024-01-01 14:43:16,446] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:43:16,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:43:16,448] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:43:16,453] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:43:16,453] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:43:16,453] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:43:16,453] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:43:16,454] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:43:16,454] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:43:16,454] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:43:16,454] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:43:16,454] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:43:16,454] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:43:18,814] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M02_read_Peak_Union.out1 [2024-01-01 14:43:18,954] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:43:18,956] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:43:18,957] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:43:18,961] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:43:18,961] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:43:18,961] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:43:18,961] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:43:18,961] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:43:18,961] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:43:18,961] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:43:18,961] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:43:18,961] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:43:18,962] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:43:21,304] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M06_read_Peak_Union.out1 [2024-01-01 14:43:21,445] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:43:21,447] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:43:21,448] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:43:21,453] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:43:21,453] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:43:21,453] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:43:21,453] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search 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[2024-01-01 14:43:23,737] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G220M05_read_Peak_Union.out1 [2024-01-01 14:43:23,863] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2024-01-01 14:43:23,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:23,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:23,876] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:23,881] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:23,890] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-01-01 14:43:23,916] multiqc [DEBUG ] File 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exceeded search pattern filesize limit: Step_06a_G220_SG_CHIPSEQ_G220M04.o3376251 [2024-01-01 14:43:24,446] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G220_SG_CHIPSEQ_G220M05.o3376252 [2024-01-01 14:43:24,449] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G220_SG_CHIPSEQ_G220M05.o3376252 [2024-01-01 14:43:24,450] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G220_SG_CHIPSEQ_G220M05.o3376252 [2024-01-01 14:43:24,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G220_SG_CHIPSEQ_G220M05.o3376252 [2024-01-01 14:43:24,465] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G220_SG_CHIPSEQ_G220M05.o3376252 [2024-01-01 14:43:24,490] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search 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search pattern filesize limit: macs2.qsub [2024-01-01 14:43:27,889] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M02.o3376419 [2024-01-01 14:43:27,892] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M02.o3376419 [2024-01-01 14:43:27,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M02.o3376419 [2024-01-01 14:43:27,898] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M02.o3376419 [2024-01-01 14:43:27,913] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M02.o3376419 [2024-01-01 14:43:27,942] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M06.o3376423 [2024-01-01 14:43:27,946] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M06.o3376423 [2024-01-01 14:43:27,947] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M06.o3376423 [2024-01-01 14:43:27,954] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M06.o3376423 [2024-01-01 14:43:27,968] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M06.o3376423 [2024-01-01 14:43:27,986] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M03.o3376420 [2024-01-01 14:43:27,989] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M03.o3376420 [2024-01-01 14:43:27,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M03.o3376420 [2024-01-01 14:43:28,000] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M03.o3376420 [2024-01-01 14:43:28,014] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M03.o3376420 [2024-01-01 14:43:28,043] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M01.o3376418 [2024-01-01 14:43:28,047] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M01.o3376418 [2024-01-01 14:43:28,047] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M01.o3376418 [2024-01-01 14:43:28,054] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M01.o3376418 [2024-01-01 14:43:28,069] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M01.o3376418 [2024-01-01 14:43:28,107] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M05.o3376422 [2024-01-01 14:43:28,112] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M05.o3376422 [2024-01-01 14:43:28,112] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M05.o3376422 [2024-01-01 14:43:28,118] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M05.o3376422 [2024-01-01 14:43:28,137] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M05.o3376422 [2024-01-01 14:43:28,158] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M04.o3376421 [2024-01-01 14:43:28,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M04.o3376421 [2024-01-01 14:43:28,161] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M04.o3376421 [2024-01-01 14:43:28,165] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M04.o3376421 [2024-01-01 14:43:28,178] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G220_SG_CHIPSEQ_G220M04.o3376421 [2024-01-01 14:43:28,184] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_macs2.sh [2024-01-01 14:43:28,186] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_macs2.sh [2024-01-01 14:43:28,190] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_macs2.sh [2024-01-01 14:43:28,225] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-01-01 14:43:28,227] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-01-01 14:43:28,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-01-01 14:43:28,244] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-01-01 14:43:28,247] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-01-01 14:43:28,271] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: overlap.R [2024-01-01 14:43:28,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: overlap.R [2024-01-01 14:43:28,273] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: overlap.R [2024-01-01 14:43:28,278] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: overlap.R [2024-01-01 14:43:28,288] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: overlap.R [2024-01-01 14:43:28,293] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: overlap.sh [2024-01-01 14:43:28,295] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: overlap.sh [2024-01-01 14:43:28,296] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: overlap.sh [2024-01-01 14:43:28,299] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: overlap.sh [2024-01-01 14:43:28,317] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: overlap.sh [2024-01-01 14:43:28,327] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2024-01-01 14:43:28,330] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2024-01-01 14:43:28,334] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2024-01-01 14:43:28,369] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Peak_Counts.sh [2024-01-01 14:43:28,372] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Peak_Counts.sh [2024-01-01 14:43:28,389] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2024-01-01 14:43:28,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2024-01-01 14:43:28,391] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2024-01-01 14:43:28,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2024-01-01 14:43:28,421] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2024-01-01 14:43:28,445] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: BED_to_WIG.sh [2024-01-01 14:43:28,448] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: BED_to_WIG.sh [2024-01-01 14:43:28,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: BED_to_WIG.sh [2024-01-01 14:43:28,483] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bedToBigBed [2024-01-01 14:43:28,485] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bedToBigBed [2024-01-01 14:43:28,485] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bedToBigBed [2024-01-01 14:43:28,490] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: bedToBigBed [2024-01-01 14:43:28,490] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: bedToBigBed [2024-01-01 14:43:28,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bedToBigBed [2024-01-01 14:43:28,490] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: bedToBigBed [2024-01-01 14:43:28,490] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: bedToBigBed [2024-01-01 14:43:28,490] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: bedToBigBed [2024-01-01 14:43:28,490] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: bedToBigBed [2024-01-01 14:43:28,490] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: bedToBigBed [2024-01-01 14:43:28,490] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: bedToBigBed [2024-01-01 14:43:28,498] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bedToBigBed [2024-01-01 14:43:28,505] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2024-01-01 14:43:28,507] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2024-01-01 14:43:28,511] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2024-01-01 14:43:28,570] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: ENCODE_Blacklist_Overlap_Summary.txt [2024-01-01 14:43:28,572] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: ENCODE_Blacklist_Overlap_Summary.txt [2024-01-01 14:43:28,604] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:43:28,604] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:43:28,605] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:43:28,605] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Chr_Peak_Counts.pdf [2024-01-01 14:43:28,605] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:43:28,605] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:43:28,605] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:43:28,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M05_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:43:28,607] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M06_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:43:28,608] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M01_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:43:28,608] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M04_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:43:28,609] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M02_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:43:28,609] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G220M03_narrow_MACS2_peaks.narrowPeak.bed [2024-01-01 14:43:28,609] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2024-01-01 14:43:29,016] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.1.2 [2024-01-01 14:43:29,477] multiqc.modules.macs2.macs2 [INFO ] Found 12 logs [2024-01-01 14:43:29,485] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.1.2 [2024-01-01 14:43:29,537] multiqc.modules.picard.picard [INFO ] Found 6 InsertSizeMetrics reports [2024-01-01 14:43:29,564] multiqc.modules.samtools.samtools [INFO ] Found 6 flagstat reports [2024-01-01 14:43:29,569] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G220M02_idxstats [2024-01-01 14:43:29,569] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G220M03_idxstats [2024-01-01 14:43:29,570] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G220M04_idxstats [2024-01-01 14:43:29,571] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G220M05_idxstats [2024-01-01 14:43:29,572] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G220M01_idxstats [2024-01-01 14:43:29,573] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G220M06_idxstats [2024-01-01 14:43:29,573] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G220M02_idxstats [2024-01-01 14:43:29,573] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G220M03_idxstats [2024-01-01 14:43:29,574] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G220M04_idxstats [2024-01-01 14:43:29,574] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G220M05_idxstats [2024-01-01 14:43:29,574] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G220M01_idxstats [2024-01-01 14:43:29,575] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G220M06_idxstats [2024-01-01 14:43:29,580] multiqc.modules.samtools.samtools [INFO ] Found 6 idxstats reports [2024-01-01 14:43:29,588] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G220_M03_CKDL230041222-1A_HHWMJDSX7_L1_R1' [2024-01-01 14:43:29,591] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G220_M06_CKDL230041222-1A_HHWMJDSX7_L1_R1' [2024-01-01 14:43:29,593] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G220_M04_CKDL230041222-1A_HHWMJDSX7_L1_R1' [2024-01-01 14:43:29,595] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G220_M02_CKDL230041222-1A_HHWMJDSX7_L1_R1' [2024-01-01 14:43:29,596] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G220_M05_CKDL230041222-1A_HHWMJDSX7_L1_R1' [2024-01-01 14:43:29,597] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G220_M01_CKDL230041222-1A_HHWMJDSX7_L1_R1' [2024-01-01 14:43:29,598] multiqc.modules.bowtie2.bowtie2 [INFO ] Found 7 reports [2024-01-01 14:43:31,852] multiqc.modules.fastqc.fastqc [INFO ] Found 12 reports [2024-01-01 14:43:32,252] multiqc [INFO ] Compressing plot data [2024-01-01 14:43:32,735] multiqc [INFO ] Report : Job_Summary/G220_SG_CHIPSEQ_MULTIQC/multiqc_report.html [2024-01-01 14:43:32,736] multiqc [INFO ] Data : Job_Summary/G220_SG_CHIPSEQ_MULTIQC/multiqc_data [2024-01-01 14:43:32,736] multiqc [DEBUG ] Moving data file from '/scratch/tmp10hl89wu/multiqc_data' to 'Job_Summary/G220_SG_CHIPSEQ_MULTIQC/multiqc_data' [2024-01-01 14:43:32,859] multiqc [INFO ] MultiQC complete