[2023-12-05 10:13:22,480] multiqc [DEBUG ] This is MultiQC v1.12 [2023-12-05 10:13:22,480] multiqc [DEBUG ] No MultiQC config found: /usr/lib/python3.8/site-packages/multiqc_config.yaml [2023-12-05 10:13:22,480] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2023-12-05 10:13:22,481] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-12-05 10:13:22,481] multiqc [DEBUG ] Command used: /usr/bin/multiqc /projectnb2/wax-dk/max/G218_SG_CHIP_MACS2_20231204 -o Job_Summary/G218_MACS2_MULTIQC [2023-12-05 10:13:22,776] multiqc [WARNING] MultiQC Version v1.17 now available! [2023-12-05 10:13:22,776] multiqc [DEBUG ] Command : /usr/bin/multiqc /projectnb2/wax-dk/max/G218_SG_CHIP_MACS2_20231204 -o Job_Summary/G218_MACS2_MULTIQC [2023-12-05 10:13:22,776] multiqc [DEBUG ] Working dir : /projectnb2/wax-dk/max/G218_SG_CHIP_MACS2_20231204/Scripts/16_MULTIQC [2023-12-05 10:13:22,776] multiqc [DEBUG ] Template : default [2023-12-05 10:13:22,776] multiqc [DEBUG ] Running Python 3.8.1 (default, Dec 26 2019, 14:42:08) [GCC 9.2.0] [2023-12-05 10:13:22,778] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2023-12-05 10:13:22,778] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmptjlvcj_t [2023-12-05 10:13:22,909] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G218_SG_CHIP_MACS2_20231204 [2023-12-05 10:13:23,784] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-12-05 10:13:23,789] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-12-05 10:13:23,790] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-12-05 10:13:23,796] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-12-05 10:13:23,810] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-12-05 10:13:23,829] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: copy_from_indexfile.py [2023-12-05 10:13:23,832] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: copy_from_indexfile.py [2023-12-05 10:13:23,850] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: copy_samples.py [2023-12-05 10:13:23,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: copy_samples.py [2023-12-05 10:13:23,852] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: copy_samples.py [2023-12-05 10:13:23,856] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: copy_samples.py [2023-12-05 10:13:23,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: copy_samples.py [2023-12-05 10:13:23,909] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-12-05 10:13:23,914] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-12-05 10:13:23,915] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-12-05 10:13:23,922] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-12-05 10:13:23,949] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-12-05 10:13:23,972] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-12-05 10:13:23,975] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-12-05 10:13:23,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-12-05 10:13:23,981] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-12-05 10:13:23,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-12-05 10:13:23,988] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-12-05 10:13:23,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: DNAChIPseq_pipeline.pdf [2023-12-05 10:13:23,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:13:23,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:13:23,992] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_sorted_mapped.bam [2023-12-05 10:13:24,009] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_alignments.bam [2023-12-05 10:13:24,009] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_alignments.bam.bai [2023-12-05 10:13:24,009] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_sorted_mapped.bam.bai [2023-12-05 10:13:24,014] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:13:24,016] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:13:24,016] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:13:24,020] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:13:24,020] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:13:24,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:13:24,020] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:13:24,020] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:13:24,020] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:13:24,020] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:13:24,020] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:13:24,052] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:13:25,446] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:13:25,539] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_StrgtPks_tab.bed [2023-12-05 10:13:25,540] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_filtered_StrgtPks.bam [2023-12-05 10:13:25,540] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_StrgtPksRm_tab.bed [2023-12-05 10:13:25,541] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_filtered_StrgtPks_sorted.bam [2023-12-05 10:13:25,541] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:13:25,541] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_filtered_StrgtPks.bam.bai [2023-12-05 10:13:25,551] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:25,553] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:25,553] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:25,558] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:25,558] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:25,564] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:25,611] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M07_read_SICER.out1 [2023-12-05 10:13:25,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M07_read_SICER.out1 [2023-12-05 10:13:25,615] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M07_read_SICER.out1 [2023-12-05 10:13:25,621] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M07_read_SICER.out1 [2023-12-05 10:13:25,621] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M07_read_SICER.out1 [2023-12-05 10:13:25,621] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M07_read_SICER.out1 [2023-12-05 10:13:25,621] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M07_read_SICER.out1 [2023-12-05 10:13:25,621] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M07_read_SICER.out1 [2023-12-05 10:13:25,621] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M07_read_SICER.out1 [2023-12-05 10:13:25,621] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M07_read_SICER.out1 [2023-12-05 10:13:26,070] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M07_read_SICER.out1 [2023-12-05 10:13:26,094] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07-1-removed.bed [2023-12-05 10:13:26,095] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:13:26,125] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:26,128] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:26,129] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:26,143] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:26,143] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:26,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:26,143] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:26,143] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:26,143] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:26,143] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:26,144] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:26,144] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:26,144] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:36,629] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:37,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:13:37,283] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland [2023-12-05 10:13:37,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland [2023-12-05 10:13:37,287] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland [2023-12-05 10:13:37,300] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland [2023-12-05 10:13:37,300] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland [2023-12-05 10:13:37,300] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland [2023-12-05 10:13:37,300] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland [2023-12-05 10:13:37,300] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland [2023-12-05 10:13:37,300] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland [2023-12-05 10:13:37,300] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland [2023-12-05 10:13:37,672] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M07-W400-G2400-E100.scoreisland [2023-12-05 10:13:37,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:13:37,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:13:37,701] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:13:37,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:13:37,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:13:37,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:13:37,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:13:37,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:13:37,722] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_hist.pdf [2023-12-05 10:13:37,787] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M07_metrics [2023-12-05 10:13:37,791] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M07_metrics [2023-12-05 10:13:37,791] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M07_metrics [2023-12-05 10:13:37,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M07_metrics [2023-12-05 10:13:37,816] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M07_metrics [2023-12-05 10:13:37,890] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:37,895] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:37,895] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:37,902] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:37,902] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:37,902] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:37,902] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:37,902] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:37,902] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:37,902] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:37,902] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:37,912] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:38,296] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:38,318] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:13:38,360] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:38,364] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:38,364] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:38,379] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:38,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:38,380] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:38,380] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:38,380] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:38,380] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:38,380] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:38,552] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:38,566] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:38,570] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:38,570] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:38,574] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:38,574] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:38,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M07_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:38,603] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:38,606] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:38,607] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:38,613] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:38,613] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:38,613] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:38,613] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:38,613] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:38,613] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:38,613] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:38,614] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:38,621] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:38,964] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:38,990] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M07_read_MACS2_peaks.out1 [2023-12-05 10:13:38,994] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M07_read_MACS2_peaks.out1 [2023-12-05 10:13:38,994] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M07_read_MACS2_peaks.out1 [2023-12-05 10:13:38,999] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M07_read_MACS2_peaks.out1 [2023-12-05 10:13:38,999] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M07_read_MACS2_peaks.out1 [2023-12-05 10:13:39,174] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M07_read_MACS2_peaks.out1 [2023-12-05 10:13:39,183] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:13:39,192] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:39,194] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:39,195] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:39,200] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:39,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:39,207] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M07_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:39,208] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_narrow_MACS2_summits.bed [2023-12-05 10:13:39,230] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:13:39,235] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:13:39,238] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:13:39,252] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:13:39,252] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:13:39,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:13:39,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:13:39,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:13:39,256] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:13:39,258] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:13:39,258] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_alignments.bam [2023-12-05 10:13:39,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_sorted_mapped.bam.bai [2023-12-05 10:13:39,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_alignments.bam.bai [2023-12-05 10:13:39,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_sorted_mapped.bam [2023-12-05 10:13:39,291] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:13:39,294] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:13:39,295] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:13:39,301] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:13:39,301] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:13:39,301] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:13:39,301] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:13:39,301] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:13:39,301] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:13:39,301] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:13:39,301] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:13:39,325] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:13:40,615] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:13:40,688] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_filtered_StrgtPks_sorted.bam [2023-12-05 10:13:40,688] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_filtered_StrgtPks.bam [2023-12-05 10:13:40,689] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_StrgtPks_tab.bed [2023-12-05 10:13:40,689] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_filtered_StrgtPks.bam.bai [2023-12-05 10:13:40,689] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:13:40,689] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_StrgtPksRm_tab.bed [2023-12-05 10:13:40,691] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:13:40,691] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_narrow_MACS2_summits.bed [2023-12-05 10:13:40,726] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M01_read_MACS2_peaks.out1 [2023-12-05 10:13:40,730] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M01_read_MACS2_peaks.out1 [2023-12-05 10:13:40,731] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M01_read_MACS2_peaks.out1 [2023-12-05 10:13:40,738] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M01_read_MACS2_peaks.out1 [2023-12-05 10:13:40,738] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M01_read_MACS2_peaks.out1 [2023-12-05 10:13:40,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M01_read_MACS2_peaks.out1 [2023-12-05 10:13:40,738] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M01_read_MACS2_peaks.out1 [2023-12-05 10:13:40,738] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M01_read_MACS2_peaks.out1 [2023-12-05 10:13:40,738] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M01_read_MACS2_peaks.out1 [2023-12-05 10:13:40,739] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M01_read_MACS2_peaks.out1 [2023-12-05 10:13:40,739] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M01_read_MACS2_peaks.out1 [2023-12-05 10:13:40,748] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M01_read_MACS2_peaks.out1 [2023-12-05 10:13:41,139] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M01_read_MACS2_peaks.out1 [2023-12-05 10:13:41,211] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:41,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:41,216] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:41,223] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:41,223] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:41,231] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:41,308] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:41,313] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:41,314] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:41,322] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:41,322] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:41,322] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:41,322] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:41,322] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:41,322] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:41,322] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:41,322] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:41,347] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:42,417] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:42,520] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:42,524] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:42,524] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:42,530] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:42,531] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:42,531] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:42,531] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:42,531] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:42,531] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:42,531] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:42,531] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:42,552] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:43,508] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:43,602] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:43,607] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:43,607] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:43,614] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:43,614] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:43,614] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:43,614] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:43,614] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:43,614] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:43,614] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:43,614] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:43,624] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:44,043] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M01_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:44,067] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:13:44,093] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:44,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:44,096] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:44,100] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:44,101] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:44,101] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:44,101] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:44,101] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:44,101] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:44,101] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:44,109] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M01_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:44,111] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:13:44,112] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:13:44,112] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:13:44,113] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:13:44,121] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:13:44,124] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:13:44,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:13:44,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:13:44,139] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_hist.pdf [2023-12-05 10:13:44,163] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M01_metrics [2023-12-05 10:13:44,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M01_metrics [2023-12-05 10:13:44,168] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M01_metrics [2023-12-05 10:13:44,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M01_metrics [2023-12-05 10:13:44,194] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M01_metrics [2023-12-05 10:13:44,230] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M01_read_SICER.out1 [2023-12-05 10:13:44,235] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M01_read_SICER.out1 [2023-12-05 10:13:44,235] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M01_read_SICER.out1 [2023-12-05 10:13:44,241] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M01_read_SICER.out1 [2023-12-05 10:13:44,241] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M01_read_SICER.out1 [2023-12-05 10:13:44,242] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M01_read_SICER.out1 [2023-12-05 10:13:44,242] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M01_read_SICER.out1 [2023-12-05 10:13:44,242] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M01_read_SICER.out1 [2023-12-05 10:13:44,242] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M01_read_SICER.out1 [2023-12-05 10:13:44,242] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M01_read_SICER.out1 [2023-12-05 10:13:44,242] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M01_read_SICER.out1 [2023-12-05 10:13:44,262] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M01_read_SICER.out1 [2023-12-05 10:13:44,771] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M01_read_SICER.out1 [2023-12-05 10:13:44,800] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01-1-removed.bed [2023-12-05 10:13:44,836] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland [2023-12-05 10:13:44,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland [2023-12-05 10:13:44,841] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland [2023-12-05 10:13:44,848] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland [2023-12-05 10:13:44,848] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland [2023-12-05 10:13:44,849] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland [2023-12-05 10:13:44,849] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland [2023-12-05 10:13:44,849] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland [2023-12-05 10:13:44,849] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland [2023-12-05 10:13:44,849] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland [2023-12-05 10:13:45,347] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland [2023-12-05 10:13:45,403] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,406] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,407] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,412] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,412] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,412] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,412] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,412] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,412] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,412] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,419] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M01-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:13:45,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:13:45,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:13:45,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:13:45,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:13:45,422] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:13:45,427] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:13:45,430] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:13:45,442] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:13:45,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:13:45,447] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:13:45,479] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_alignments.bam.bai [2023-12-05 10:13:45,479] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_sorted_mapped.bam [2023-12-05 10:13:45,488] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_sorted_mapped.bam.bai [2023-12-05 10:13:45,488] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_alignments.bam [2023-12-05 10:13:45,499] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M14-W400-G2400-E100.scoreisland [2023-12-05 10:13:45,502] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M14-W400-G2400-E100.scoreisland [2023-12-05 10:13:45,502] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M14-W400-G2400-E100.scoreisland [2023-12-05 10:13:45,507] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M14-W400-G2400-E100.scoreisland [2023-12-05 10:13:45,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M14-W400-G2400-E100.scoreisland [2023-12-05 10:13:45,792] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M14-W400-G2400-E100.scoreisland [2023-12-05 10:13:45,813] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M14-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,815] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M14-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,815] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M14-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,826] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M14-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M14-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,833] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M14-W400-G2400-E100.scoreisland.bb [2023-12-05 10:13:45,835] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:13:45,836] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14-1-removed.bed [2023-12-05 10:13:45,837] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:13:45,880] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M14_read_SICER.out1 [2023-12-05 10:13:45,883] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M14_read_SICER.out1 [2023-12-05 10:13:45,884] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M14_read_SICER.out1 [2023-12-05 10:13:45,888] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M14_read_SICER.out1 [2023-12-05 10:13:45,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M14_read_SICER.out1 [2023-12-05 10:13:45,888] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M14_read_SICER.out1 [2023-12-05 10:13:45,888] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M14_read_SICER.out1 [2023-12-05 10:13:45,889] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M14_read_SICER.out1 [2023-12-05 10:13:45,889] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M14_read_SICER.out1 [2023-12-05 10:13:45,889] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M14_read_SICER.out1 [2023-12-05 10:13:46,176] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M14_read_SICER.out1 [2023-12-05 10:13:46,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:13:46,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:13:46,195] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:13:46,195] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:13:46,206] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:13:46,209] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:13:46,222] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:13:46,222] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:13:46,227] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:13:46,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:13:46,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:13:46,233] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:13:46,233] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:13:46,233] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:13:46,233] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:13:46,233] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:13:46,234] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:13:46,234] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:13:46,234] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:13:46,259] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:13:47,585] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:13:47,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:13:47,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_filtered_StrgtPks.bam.bai [2023-12-05 10:13:47,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_StrgtPks_tab.bed [2023-12-05 10:13:47,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_filtered_StrgtPks.bam [2023-12-05 10:13:47,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_filtered_StrgtPks_sorted.bam [2023-12-05 10:13:47,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_StrgtPksRm_tab.bed [2023-12-05 10:13:47,667] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:47,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:47,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:47,676] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:47,676] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:47,684] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:47,691] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:13:47,699] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M14_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:47,702] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M14_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:47,702] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M14_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:47,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M14_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:47,717] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M14_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:47,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_narrow_MACS2_summits.bed [2023-12-05 10:13:47,747] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:47,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:47,751] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:47,757] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:47,758] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:47,758] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:47,758] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:47,758] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:47,758] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:47,758] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:47,993] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:48,006] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:13:48,034] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:48,038] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:48,039] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:48,046] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:48,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:48,046] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:48,046] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:48,046] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:48,046] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:48,046] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:48,262] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M14_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:48,304] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M14_read_MACS2_peaks.out1 [2023-12-05 10:13:48,308] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M14_read_MACS2_peaks.out1 [2023-12-05 10:13:48,308] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M14_read_MACS2_peaks.out1 [2023-12-05 10:13:48,315] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M14_read_MACS2_peaks.out1 [2023-12-05 10:13:48,315] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M14_read_MACS2_peaks.out1 [2023-12-05 10:13:48,383] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M14_read_MACS2_peaks.out1 [2023-12-05 10:13:48,440] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M14_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:48,444] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M14_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:48,445] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M14_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:48,452] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M14_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:48,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M14_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:48,523] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M14_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:48,531] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:13:48,531] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:13:48,532] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:13:48,541] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:13:48,545] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:13:48,561] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:13:48,561] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:13:48,561] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:13:48,601] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M14_metrics [2023-12-05 10:13:48,605] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M14_metrics [2023-12-05 10:13:48,606] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M14_metrics [2023-12-05 10:13:48,613] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M14_metrics [2023-12-05 10:13:48,630] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M14_metrics [2023-12-05 10:13:48,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_hist.pdf [2023-12-05 10:13:48,635] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:13:48,637] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:13:48,638] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_sorted_mapped.bam [2023-12-05 10:13:48,638] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_alignments.bam.bai [2023-12-05 10:13:48,672] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_alignments.bam [2023-12-05 10:13:48,672] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_sorted_mapped.bam.bai [2023-12-05 10:13:48,679] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:13:48,682] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:13:48,683] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:13:48,694] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:13:48,694] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:13:48,694] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:13:48,694] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:13:48,694] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:13:48,694] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:13:48,694] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:13:48,694] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:13:48,717] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:13:50,030] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:13:50,102] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:13:50,143] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M15_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:50,147] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M15_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:50,148] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M15_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:50,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M15_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:50,173] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M15_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:13:50,200] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:50,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:50,203] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:50,208] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:50,208] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:50,303] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.gappedPeak [2023-12-05 10:13:50,316] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M15_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:50,319] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M15_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:50,319] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M15_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:50,325] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M15_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:50,333] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M15_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:13:50,362] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:50,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:50,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:50,373] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:50,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:50,452] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.broadPeak [2023-12-05 10:13:50,482] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_narrow_MACS2_summits.bed [2023-12-05 10:13:50,487] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:50,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:50,489] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:50,493] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:50,502] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M15_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:13:50,511] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M15_read_MACS2_peaks.out1 [2023-12-05 10:13:50,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M15_read_MACS2_peaks.out1 [2023-12-05 10:13:50,515] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M15_read_MACS2_peaks.out1 [2023-12-05 10:13:50,521] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M15_read_MACS2_peaks.out1 [2023-12-05 10:13:50,538] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M15_read_MACS2_peaks.out1 [2023-12-05 10:13:50,541] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:13:50,543] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:13:50,549] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:13:50,553] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:13:50,574] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:13:50,574] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:13:50,574] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:13:50,574] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:13:50,574] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:13:50,574] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:13:50,575] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_filtered_StrgtPks_sorted.bam [2023-12-05 10:13:50,575] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_filtered_StrgtPks.bam [2023-12-05 10:13:50,575] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_StrgtPksRm_tab.bed [2023-12-05 10:13:50,575] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_filtered_StrgtPks.bam.bai [2023-12-05 10:13:50,575] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_StrgtPks_tab.bed [2023-12-05 10:13:50,575] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:13:50,576] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15-1-removed.bed [2023-12-05 10:13:50,616] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100.scoreisland [2023-12-05 10:13:50,619] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100.scoreisland [2023-12-05 10:13:50,620] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100.scoreisland [2023-12-05 10:13:50,625] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100.scoreisland [2023-12-05 10:13:50,625] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100.scoreisland [2023-12-05 10:13:50,933] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100.scoreisland [2023-12-05 10:13:50,992] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M15_read_SICER.out1 [2023-12-05 10:13:50,996] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M15_read_SICER.out1 [2023-12-05 10:13:50,997] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M15_read_SICER.out1 [2023-12-05 10:13:51,005] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M15_read_SICER.out1 [2023-12-05 10:13:51,005] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M15_read_SICER.out1 [2023-12-05 10:13:51,005] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M15_read_SICER.out1 [2023-12-05 10:13:51,006] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M15_read_SICER.out1 [2023-12-05 10:13:51,006] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M15_read_SICER.out1 [2023-12-05 10:13:51,006] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M15_read_SICER.out1 [2023-12-05 10:13:51,006] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M15_read_SICER.out1 [2023-12-05 10:13:51,319] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M15_read_SICER.out1 [2023-12-05 10:13:51,336] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:13:51,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:51,367] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:51,368] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:51,374] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:51,374] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:51,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:51,374] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:51,374] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:51,375] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:51,375] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:51,375] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:51,375] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:13:51,375] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:02,662] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:03,350] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:03,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:03,353] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:03,359] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:03,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:03,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M15-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:03,368] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:14:03,368] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:14:03,374] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:03,378] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:03,392] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:14:03,393] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:14:03,393] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:14:03,393] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:14:03,395] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_hist.pdf [2023-12-05 10:14:03,456] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M15_metrics [2023-12-05 10:14:03,461] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M15_metrics [2023-12-05 10:14:03,461] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M15_metrics [2023-12-05 10:14:03,468] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M15_metrics [2023-12-05 10:14:03,494] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M15_metrics [2023-12-05 10:14:03,498] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:14:03,501] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:14:03,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_alignments.bam.bai [2023-12-05 10:14:03,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_alignments.bam [2023-12-05 10:14:03,530] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_sorted_mapped.bam [2023-12-05 10:14:03,530] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_sorted_mapped.bam.bai [2023-12-05 10:14:03,533] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05-1-removed.bed [2023-12-05 10:14:03,537] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M05-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:03,539] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M05-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:03,539] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M05-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:03,543] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M05-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:03,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M05-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:03,549] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M05-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:03,550] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:14:03,562] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M05-W400-G2400-E100.scoreisland [2023-12-05 10:14:03,564] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M05-W400-G2400-E100.scoreisland [2023-12-05 10:14:03,564] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M05-W400-G2400-E100.scoreisland [2023-12-05 10:14:03,572] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M05-W400-G2400-E100.scoreisland [2023-12-05 10:14:03,572] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M05-W400-G2400-E100.scoreisland [2023-12-05 10:14:03,922] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M05-W400-G2400-E100.scoreisland [2023-12-05 10:14:03,942] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:14:03,994] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M05_read_SICER.out1 [2023-12-05 10:14:03,998] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M05_read_SICER.out1 [2023-12-05 10:14:03,998] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M05_read_SICER.out1 [2023-12-05 10:14:04,004] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M05_read_SICER.out1 [2023-12-05 10:14:04,004] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M05_read_SICER.out1 [2023-12-05 10:14:04,004] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M05_read_SICER.out1 [2023-12-05 10:14:04,004] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M05_read_SICER.out1 [2023-12-05 10:14:04,004] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M05_read_SICER.out1 [2023-12-05 10:14:04,005] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M05_read_SICER.out1 [2023-12-05 10:14:04,005] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M05_read_SICER.out1 [2023-12-05 10:14:04,346] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M05_read_SICER.out1 [2023-12-05 10:14:04,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:14:04,365] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:14:04,372] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:04,375] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:04,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:14:04,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:14:04,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:14:04,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:14:04,412] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:04,415] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:04,416] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:04,421] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:04,422] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:04,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:04,422] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:04,422] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:04,422] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:04,422] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:04,422] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:04,446] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:05,758] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:05,832] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:14:05,838] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_filtered_StrgtPks.bam.bai [2023-12-05 10:14:05,838] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_filtered_StrgtPks_sorted.bam [2023-12-05 10:14:05,838] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_StrgtPksRm_tab.bed [2023-12-05 10:14:05,839] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_filtered_StrgtPks.bam [2023-12-05 10:14:05,839] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_StrgtPks_tab.bed [2023-12-05 10:14:05,845] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M05_read_MACS2_peaks.out1 [2023-12-05 10:14:05,848] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M05_read_MACS2_peaks.out1 [2023-12-05 10:14:05,848] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M05_read_MACS2_peaks.out1 [2023-12-05 10:14:05,853] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M05_read_MACS2_peaks.out1 [2023-12-05 10:14:05,853] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M05_read_MACS2_peaks.out1 [2023-12-05 10:14:05,853] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M05_read_MACS2_peaks.out1 [2023-12-05 10:14:05,854] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M05_read_MACS2_peaks.out1 [2023-12-05 10:14:05,854] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M05_read_MACS2_peaks.out1 [2023-12-05 10:14:05,854] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M05_read_MACS2_peaks.out1 [2023-12-05 10:14:05,854] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M05_read_MACS2_peaks.out1 [2023-12-05 10:14:05,854] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M05_read_MACS2_peaks.out1 [2023-12-05 10:14:05,860] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M05_read_MACS2_peaks.out1 [2023-12-05 10:14:06,225] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M05_read_MACS2_peaks.out1 [2023-12-05 10:14:06,277] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:06,281] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:06,281] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:06,287] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:06,287] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:06,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:06,287] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:06,287] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:06,287] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:06,287] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:06,287] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:06,299] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:06,813] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:06,872] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:06,875] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:06,876] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:06,882] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:06,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:06,890] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:06,895] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:14:06,902] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:06,911] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:06,911] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:06,915] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:06,915] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:06,924] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:06,962] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:06,966] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:06,967] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:06,972] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:06,972] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:06,972] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:06,972] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:06,972] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:06,972] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:06,973] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:06,973] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:06,985] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:07,567] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M05_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:07,599] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_narrow_MACS2_summits.bed [2023-12-05 10:14:07,599] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:14:07,633] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:07,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:07,636] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:07,641] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:07,641] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:07,641] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:07,641] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:07,642] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:07,642] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:07,642] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:07,642] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:07,657] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:08,043] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M05_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:08,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:14:08,069] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:08,073] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:08,086] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:14:08,086] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:14:08,086] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:14:08,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:14:08,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:14:08,088] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_hist.pdf [2023-12-05 10:14:08,108] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M05_metrics [2023-12-05 10:14:08,112] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M05_metrics [2023-12-05 10:14:08,112] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M05_metrics [2023-12-05 10:14:08,119] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M05_metrics [2023-12-05 10:14:08,143] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M05_metrics [2023-12-05 10:14:08,166] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-12-05 10:14:08,170] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-12-05 10:14:08,171] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-12-05 10:14:08,178] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-12-05 10:14:08,194] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-12-05 10:14:08,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: run.sh [2023-12-05 10:14:08,206] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: run.sh [2023-12-05 10:14:08,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: run.sh [2023-12-05 10:14:08,241] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_compact.R [2023-12-05 10:14:08,244] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_compact.R [2023-12-05 10:14:08,264] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_detailed.R [2023-12-05 10:14:08,267] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_detailed.R [2023-12-05 10:14:08,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: process_output_detailed.R [2023-12-05 10:14:08,289] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:14:08,292] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:14:08,292] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_alignments.bam [2023-12-05 10:14:08,292] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_sorted_mapped.bam [2023-12-05 10:14:08,320] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_alignments.bam.bai [2023-12-05 10:14:08,320] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_sorted_mapped.bam.bai [2023-12-05 10:14:08,327] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:14:08,329] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:14:08,330] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:14:08,335] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:14:08,335] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:14:08,335] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:14:08,335] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:14:08,335] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:14:08,335] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:14:08,335] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:14:08,335] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:14:08,360] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:14:09,641] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:14:09,713] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_filtered_StrgtPks.bam [2023-12-05 10:14:09,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_filtered_StrgtPks_sorted.bam [2023-12-05 10:14:09,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_StrgtPksRm_tab.bed [2023-12-05 10:14:09,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:14:09,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_filtered_StrgtPks.bam.bai [2023-12-05 10:14:09,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_StrgtPks_tab.bed [2023-12-05 10:14:09,755] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M08_metrics [2023-12-05 10:14:09,760] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M08_metrics [2023-12-05 10:14:09,760] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M08_metrics [2023-12-05 10:14:09,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M08_metrics [2023-12-05 10:14:09,783] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M08_metrics [2023-12-05 10:14:09,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_hist.pdf [2023-12-05 10:14:09,812] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M08_read_MACS2_peaks.out1 [2023-12-05 10:14:09,816] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M08_read_MACS2_peaks.out1 [2023-12-05 10:14:09,816] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M08_read_MACS2_peaks.out1 [2023-12-05 10:14:09,828] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M08_read_MACS2_peaks.out1 [2023-12-05 10:14:09,828] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M08_read_MACS2_peaks.out1 [2023-12-05 10:14:09,957] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M08_read_MACS2_peaks.out1 [2023-12-05 10:14:09,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:14:09,966] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:14:09,987] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M08_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:09,991] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M08_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:09,992] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M08_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:09,999] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M08_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:09,999] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M08_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:10,133] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M08_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:10,183] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M08_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:10,186] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M08_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:10,186] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M08_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:10,192] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M08_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:10,192] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M08_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:10,201] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M08_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:10,209] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:10,212] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:10,212] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:10,217] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:10,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:10,225] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:10,227] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_narrow_MACS2_summits.bed [2023-12-05 10:14:10,260] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:10,264] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:10,265] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:10,271] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:10,271] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:10,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:10,271] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:10,271] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:10,271] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:10,271] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:10,271] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:10,280] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:10,613] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:10,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:10,661] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:10,662] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:10,668] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:10,668] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:10,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:10,668] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:10,668] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:10,668] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:10,669] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:10,669] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:10,675] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:10,975] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M08_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:10,991] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:14:10,991] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:14:10,997] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:11,000] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:11,017] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:14:11,017] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:14:11,017] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:14:11,017] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:14:11,027] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:11,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:11,030] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:11,037] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:11,038] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:11,048] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:11,083] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:11,087] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:11,088] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:11,094] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:11,094] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:11,094] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:11,094] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:11,094] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:11,094] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:11,094] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:11,094] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:11,095] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:11,095] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:20,975] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:21,570] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100.scoreisland [2023-12-05 10:14:21,573] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100.scoreisland [2023-12-05 10:14:21,573] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100.scoreisland [2023-12-05 10:14:21,578] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100.scoreisland [2023-12-05 10:14:21,578] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100.scoreisland [2023-12-05 10:14:21,792] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M08-W400-G2400-E100.scoreisland [2023-12-05 10:14:21,826] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:14:21,828] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08-1-removed.bed [2023-12-05 10:14:21,865] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M08_read_SICER.out1 [2023-12-05 10:14:21,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M08_read_SICER.out1 [2023-12-05 10:14:21,869] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M08_read_SICER.out1 [2023-12-05 10:14:21,878] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M08_read_SICER.out1 [2023-12-05 10:14:21,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M08_read_SICER.out1 [2023-12-05 10:14:22,121] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M08_read_SICER.out1 [2023-12-05 10:14:22,147] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:14:22,148] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:14:22,148] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:14:22,148] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:14:22,148] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:14:22,154] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:22,157] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:22,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:14:22,233] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:14:22,236] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:14:22,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:14:22,274] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_alignments.bam [2023-12-05 10:14:22,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_sorted_mapped.bam.bai [2023-12-05 10:14:22,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_alignments.bam.bai [2023-12-05 10:14:22,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_sorted_mapped.bam [2023-12-05 10:14:22,279] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M02_read_Peak_Union.out1 [2023-12-05 10:14:22,281] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M02_read_Peak_Union.out1 [2023-12-05 10:14:22,282] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M02_read_Peak_Union.out1 [2023-12-05 10:14:22,286] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M02_read_Peak_Union.out1 [2023-12-05 10:14:22,286] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M02_read_Peak_Union.out1 [2023-12-05 10:14:22,286] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M02_read_Peak_Union.out1 [2023-12-05 10:14:22,286] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M02_read_Peak_Union.out1 [2023-12-05 10:14:22,286] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M02_read_Peak_Union.out1 [2023-12-05 10:14:22,286] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M02_read_Peak_Union.out1 [2023-12-05 10:14:22,286] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M02_read_Peak_Union.out1 [2023-12-05 10:14:22,286] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M02_read_Peak_Union.out1 [2023-12-05 10:14:22,312] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M02_read_Peak_Union.out1 [2023-12-05 10:14:23,735] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M02_read_Peak_Union.out1 [2023-12-05 10:14:23,814] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_filtered_StrgtPks_sorted.bam [2023-12-05 10:14:23,814] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_filtered_StrgtPks.bam [2023-12-05 10:14:23,814] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_StrgtPksRm_tab.bed [2023-12-05 10:14:23,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_filtered_StrgtPks.bam.bai [2023-12-05 10:14:23,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_StrgtPks_tab.bed [2023-12-05 10:14:23,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:14:23,846] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:23,851] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:23,852] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:23,858] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:23,858] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:23,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:23,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:23,901] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:23,902] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:23,907] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:23,907] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:23,923] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:23,957] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:23,961] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:23,962] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:23,967] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:23,968] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:23,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:23,968] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:23,968] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:23,968] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:23,968] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:23,968] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:23,977] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:24,336] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:24,387] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:24,399] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:24,400] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:24,408] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:24,408] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:24,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:24,408] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:24,408] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:24,408] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:24,408] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:24,408] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:24,418] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:24,723] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M02_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:24,748] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:14:24,751] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:14:24,776] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:24,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:24,781] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:24,786] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:24,786] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:24,786] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:24,787] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:24,787] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:24,787] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:24,787] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:24,940] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M02_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:24,976] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M02_read_MACS2_peaks.out1 [2023-12-05 10:14:24,981] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M02_read_MACS2_peaks.out1 [2023-12-05 10:14:24,981] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M02_read_MACS2_peaks.out1 [2023-12-05 10:14:24,988] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M02_read_MACS2_peaks.out1 [2023-12-05 10:14:24,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M02_read_MACS2_peaks.out1 [2023-12-05 10:14:25,153] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M02_read_MACS2_peaks.out1 [2023-12-05 10:14:25,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_narrow_MACS2_summits.bed [2023-12-05 10:14:25,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:14:25,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:14:25,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:14:25,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:14:25,208] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:25,213] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:25,232] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:14:25,232] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:14:25,234] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:14:25,276] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M02-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:25,279] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M02-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:25,279] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M02-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:25,285] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M02-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:25,285] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M02-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:25,303] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M02-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:25,343] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M02_read_SICER.out1 [2023-12-05 10:14:25,347] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M02_read_SICER.out1 [2023-12-05 10:14:25,347] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M02_read_SICER.out1 [2023-12-05 10:14:25,353] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M02_read_SICER.out1 [2023-12-05 10:14:25,353] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M02_read_SICER.out1 [2023-12-05 10:14:25,354] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M02_read_SICER.out1 [2023-12-05 10:14:25,354] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M02_read_SICER.out1 [2023-12-05 10:14:25,354] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M02_read_SICER.out1 [2023-12-05 10:14:25,354] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M02_read_SICER.out1 [2023-12-05 10:14:25,354] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M02_read_SICER.out1 [2023-12-05 10:14:25,655] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M02_read_SICER.out1 [2023-12-05 10:14:25,671] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:14:25,673] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02-1-removed.bed [2023-12-05 10:14:25,681] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M02-W400-G2400-E100.scoreisland [2023-12-05 10:14:25,683] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M02-W400-G2400-E100.scoreisland [2023-12-05 10:14:25,684] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M02-W400-G2400-E100.scoreisland [2023-12-05 10:14:25,688] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M02-W400-G2400-E100.scoreisland [2023-12-05 10:14:25,688] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M02-W400-G2400-E100.scoreisland [2023-12-05 10:14:26,005] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M02-W400-G2400-E100.scoreisland [2023-12-05 10:14:26,020] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:14:26,020] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:14:26,021] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:14:26,021] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:14:26,028] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:26,032] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:26,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:14:26,045] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:14:26,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_hist.pdf [2023-12-05 10:14:26,069] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M02_metrics [2023-12-05 10:14:26,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M02_metrics [2023-12-05 10:14:26,073] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M02_metrics [2023-12-05 10:14:26,079] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M02_metrics [2023-12-05 10:14:26,096] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M02_metrics [2023-12-05 10:14:26,116] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:14:26,118] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:14:26,119] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_sorted_mapped.bam.bai [2023-12-05 10:14:26,144] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_alignments.bam [2023-12-05 10:14:26,144] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_alignments.bam.bai [2023-12-05 10:14:26,144] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_sorted_mapped.bam [2023-12-05 10:14:26,149] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:26,152] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:26,153] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:26,159] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:26,159] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:26,159] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:26,160] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:26,160] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:26,160] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:26,160] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:26,160] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:26,185] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:27,482] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:27,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:27,598] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:27,598] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:27,604] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:27,604] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:27,604] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:27,605] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:27,605] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:27,605] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:27,605] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:27,605] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:27,699] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:32,008] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:14:32,311] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M16_read_SICER.out1 [2023-12-05 10:14:32,316] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M16_read_SICER.out1 [2023-12-05 10:14:32,317] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M16_read_SICER.out1 [2023-12-05 10:14:32,325] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M16_read_SICER.out1 [2023-12-05 10:14:32,326] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M16_read_SICER.out1 [2023-12-05 10:14:32,326] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M16_read_SICER.out1 [2023-12-05 10:14:32,326] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M16_read_SICER.out1 [2023-12-05 10:14:32,326] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M16_read_SICER.out1 [2023-12-05 10:14:32,326] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M16_read_SICER.out1 [2023-12-05 10:14:32,326] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M16_read_SICER.out1 [2023-12-05 10:14:32,586] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M16_read_SICER.out1 [2023-12-05 10:14:32,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16-1-removed.bed [2023-12-05 10:14:32,603] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:14:32,638] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:32,642] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:32,642] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:32,648] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:32,648] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:32,654] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:32,662] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100.scoreisland [2023-12-05 10:14:32,666] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100.scoreisland [2023-12-05 10:14:32,666] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100.scoreisland [2023-12-05 10:14:32,672] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100.scoreisland [2023-12-05 10:14:32,672] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100.scoreisland [2023-12-05 10:14:32,927] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M16-W400-G2400-E100.scoreisland [2023-12-05 10:14:32,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:14:32,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:14:32,942] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:14:32,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:32,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:32,967] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:14:32,967] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:14:32,967] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:14:32,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:14:32,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_filtered_StrgtPks_sorted.bam [2023-12-05 10:14:32,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_filtered_StrgtPks.bam [2023-12-05 10:14:32,969] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_filtered_StrgtPks.bam.bai [2023-12-05 10:14:32,969] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_StrgtPks_tab.bed [2023-12-05 10:14:32,969] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_StrgtPksRm_tab.bed [2023-12-05 10:14:32,969] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:14:32,970] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:14:32,973] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:14:33,004] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:33,009] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:33,009] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:33,016] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:33,016] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:33,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:33,016] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:33,016] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:33,016] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:33,016] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:33,016] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:33,040] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:33,803] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:33,854] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_narrow_MACS2_summits.bed [2023-12-05 10:14:33,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:33,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:33,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:33,895] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:33,896] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:33,896] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:33,896] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:33,896] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:33,896] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:33,896] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:34,093] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:34,116] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:34,121] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:34,121] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:34,126] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:34,126] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:34,133] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M16_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:34,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:34,208] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:34,208] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:34,215] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:34,215] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:34,215] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:34,215] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:34,215] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:34,215] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:34,215] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:34,216] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:34,231] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:34,947] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:35,061] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M16_read_MACS2_peaks.out1 [2023-12-05 10:14:35,065] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M16_read_MACS2_peaks.out1 [2023-12-05 10:14:35,066] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M16_read_MACS2_peaks.out1 [2023-12-05 10:14:35,073] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M16_read_MACS2_peaks.out1 [2023-12-05 10:14:35,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M16_read_MACS2_peaks.out1 [2023-12-05 10:14:35,073] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M16_read_MACS2_peaks.out1 [2023-12-05 10:14:35,073] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M16_read_MACS2_peaks.out1 [2023-12-05 10:14:35,073] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M16_read_MACS2_peaks.out1 [2023-12-05 10:14:35,073] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M16_read_MACS2_peaks.out1 [2023-12-05 10:14:35,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M16_read_MACS2_peaks.out1 [2023-12-05 10:14:35,236] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M16_read_MACS2_peaks.out1 [2023-12-05 10:14:35,250] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:35,253] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:35,253] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:35,258] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:35,258] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:35,272] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M16_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:35,274] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:14:35,284] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:35,288] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:35,302] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:14:35,302] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:14:35,302] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:14:35,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:14:35,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:14:35,320] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M16_metrics [2023-12-05 10:14:35,324] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M16_metrics [2023-12-05 10:14:35,324] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M16_metrics [2023-12-05 10:14:35,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M16_metrics [2023-12-05 10:14:35,346] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M16_metrics [2023-12-05 10:14:35,348] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_hist.pdf [2023-12-05 10:14:35,353] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:14:35,355] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:14:35,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_alignments.bam [2023-12-05 10:14:35,391] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_sorted_mapped.bam.bai [2023-12-05 10:14:35,391] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_alignments.bam.bai [2023-12-05 10:14:35,391] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_sorted_mapped.bam [2023-12-05 10:14:35,393] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_narrow_MACS2_summits.bed [2023-12-05 10:14:35,448] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M06_read_MACS2_peaks.out1 [2023-12-05 10:14:35,452] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M06_read_MACS2_peaks.out1 [2023-12-05 10:14:35,453] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M06_read_MACS2_peaks.out1 [2023-12-05 10:14:35,459] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M06_read_MACS2_peaks.out1 [2023-12-05 10:14:35,459] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M06_read_MACS2_peaks.out1 [2023-12-05 10:14:35,459] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M06_read_MACS2_peaks.out1 [2023-12-05 10:14:35,459] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M06_read_MACS2_peaks.out1 [2023-12-05 10:14:35,459] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M06_read_MACS2_peaks.out1 [2023-12-05 10:14:35,459] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M06_read_MACS2_peaks.out1 [2023-12-05 10:14:35,459] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M06_read_MACS2_peaks.out1 [2023-12-05 10:14:35,459] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M06_read_MACS2_peaks.out1 [2023-12-05 10:14:35,469] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M06_read_MACS2_peaks.out1 [2023-12-05 10:14:35,875] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M06_read_MACS2_peaks.out1 [2023-12-05 10:14:35,935] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:35,939] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:35,940] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:35,947] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:35,947] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:35,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:35,947] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:35,947] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:35,947] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:35,947] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:35,948] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:35,956] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:36,392] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:14:36,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:14:36,475] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:36,480] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:36,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:36,486] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:36,486] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:36,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:36,486] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:36,487] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:36,487] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:36,487] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:36,487] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:36,502] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:37,198] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.gappedPeak [2023-12-05 10:14:37,282] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:37,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:37,288] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:37,295] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:37,296] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:37,296] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:37,296] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:37,296] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:37,296] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:37,296] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:37,296] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:37,310] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:37,942] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak [2023-12-05 10:14:37,982] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:37,984] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:37,984] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:37,988] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:37,989] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:37,996] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M06_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:14:37,998] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:14:38,005] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:38,009] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:38,009] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:38,016] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:38,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:38,022] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M06_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:14:38,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:14:38,028] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:38,038] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:38,054] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:14:38,054] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:14:38,054] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:14:38,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:14:38,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:14:38,064] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:14:38,067] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:14:38,068] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:14:38,073] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:14:38,073] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:14:38,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:14:38,073] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:14:38,073] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:14:38,073] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:14:38,073] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:14:38,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:14:38,099] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:14:39,407] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:14:39,478] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_filtered_StrgtPks.bam.bai [2023-12-05 10:14:39,478] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:14:39,479] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_StrgtPksRm_tab.bed [2023-12-05 10:14:39,479] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_filtered_StrgtPks_sorted.bam [2023-12-05 10:14:39,479] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_StrgtPks_tab.bed [2023-12-05 10:14:39,479] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_filtered_StrgtPks.bam [2023-12-05 10:14:39,521] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M06_metrics [2023-12-05 10:14:39,526] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M06_metrics [2023-12-05 10:14:39,527] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M06_metrics [2023-12-05 10:14:39,533] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M06_metrics [2023-12-05 10:14:39,550] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M06_metrics [2023-12-05 10:14:39,551] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_hist.pdf [2023-12-05 10:14:39,558] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland [2023-12-05 10:14:39,562] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland [2023-12-05 10:14:39,562] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland [2023-12-05 10:14:39,567] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland [2023-12-05 10:14:39,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland [2023-12-05 10:14:39,568] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland [2023-12-05 10:14:39,568] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland [2023-12-05 10:14:39,568] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland [2023-12-05 10:14:39,568] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland [2023-12-05 10:14:39,568] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland [2023-12-05 10:14:40,074] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland [2023-12-05 10:14:40,164] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M06_read_SICER.out1 [2023-12-05 10:14:40,168] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M06_read_SICER.out1 [2023-12-05 10:14:40,169] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M06_read_SICER.out1 [2023-12-05 10:14:40,175] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M06_read_SICER.out1 [2023-12-05 10:14:40,176] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M06_read_SICER.out1 [2023-12-05 10:14:40,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M06_read_SICER.out1 [2023-12-05 10:14:40,176] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M06_read_SICER.out1 [2023-12-05 10:14:40,176] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M06_read_SICER.out1 [2023-12-05 10:14:40,176] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M06_read_SICER.out1 [2023-12-05 10:14:40,176] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M06_read_SICER.out1 [2023-12-05 10:14:40,176] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M06_read_SICER.out1 [2023-12-05 10:14:40,187] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M06_read_SICER.out1 [2023-12-05 10:14:40,713] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M06_read_SICER.out1 [2023-12-05 10:14:40,742] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06-1-removed.bed [2023-12-05 10:14:40,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:14:40,745] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:14:40,753] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:40,763] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:40,763] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:40,768] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:40,768] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:40,768] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:40,768] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:40,768] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:40,768] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:40,768] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:40,775] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M06-W400-G2400-E100.scoreisland.bb [2023-12-05 10:14:40,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:14:40,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:40,784] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:14:40,802] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:14:40,802] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:14:40,802] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:14:40,802] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:14:40,802] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:14:40,854] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: index [2023-12-05 10:14:40,856] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: index [2023-12-05 10:14:40,856] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: index [2023-12-05 10:14:40,861] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: index [2023-12-05 10:14:40,875] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: index [2023-12-05 10:14:41,114] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-12-05 10:14:41,117] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-12-05 10:14:41,117] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-12-05 10:14:41,122] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-12-05 10:14:41,135] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-12-05 10:14:41,143] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-commit.sample [2023-12-05 10:14:41,146] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-commit.sample [2023-12-05 10:14:41,169] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: update.sample [2023-12-05 10:14:41,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: update.sample [2023-12-05 10:14:41,178] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: update.sample [2023-12-05 10:14:41,202] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: push-to-checkout.sample [2023-12-05 10:14:41,205] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: push-to-checkout.sample [2023-12-05 10:14:41,210] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: push-to-checkout.sample [2023-12-05 10:14:41,246] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-push.sample [2023-12-05 10:14:41,249] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-push.sample [2023-12-05 10:14:41,310] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-rebase.sample [2023-12-05 10:14:41,314] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pre-rebase.sample [2023-12-05 10:14:41,315] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-rebase.sample [2023-12-05 10:14:41,320] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pre-rebase.sample [2023-12-05 10:14:41,331] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pre-rebase.sample [2023-12-05 10:14:41,338] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: prepare-commit-msg.sample [2023-12-05 10:14:41,341] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: prepare-commit-msg.sample [2023-12-05 10:14:41,564] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:14:41,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:14:41,566] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:14:41,570] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:14:41,570] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:14:41,570] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:14:41,570] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:14:41,570] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:14:41,570] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:14:41,570] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:14:41,570] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:14:41,571] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:14:41,571] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:14:41,577] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:14:41,583] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.idx [2023-12-05 10:14:41,585] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.idx [2023-12-05 10:14:41,586] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.idx [2023-12-05 10:14:41,590] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.idx [2023-12-05 10:14:41,598] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.idx [2023-12-05 10:14:41,688] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: b5715371fa53bf71b62f69ac0691a85f552d55 [2023-12-05 10:14:41,691] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: b5715371fa53bf71b62f69ac0691a85f552d55 [2023-12-05 10:14:41,692] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: b5715371fa53bf71b62f69ac0691a85f552d55 [2023-12-05 10:14:41,696] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: b5715371fa53bf71b62f69ac0691a85f552d55 [2023-12-05 10:14:41,703] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: b5715371fa53bf71b62f69ac0691a85f552d55 [2023-12-05 10:14:41,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:41,783] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:41,784] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:41,789] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:41,801] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:41,807] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:14:41,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:14:41,810] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:14:41,815] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:14:41,825] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:14:41,840] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:14:41,843] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:14:41,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:14:41,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:14:41,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:14:41,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:14:41,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:14:41,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:14:41,899] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:14:41,899] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:14:41,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:14:41,931] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:14:41,991] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:41,994] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:41,995] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:42,002] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:42,012] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:42,032] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:14:42,035] multiqc [DEBUG ] File ignored by 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10:14:42,756] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:14:42,761] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:14:42,798] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:14:42,850] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:42,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:42,855] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:42,863] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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[2023-12-05 10:14:44,139] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M06.o2797960 [2023-12-05 10:14:44,153] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M06.o2797960 [2023-12-05 10:14:44,177] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M03.o2797957 [2023-12-05 10:14:44,182] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M03.o2797957 [2023-12-05 10:14:44,182] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M03.o2797957 [2023-12-05 10:14:44,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M03.o2797957 [2023-12-05 10:14:44,200] multiqc 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10:14:44,430] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M14.o2797964 [2023-12-05 10:14:44,449] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M14.o2797964 [2023-12-05 10:14:44,470] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M01.o2797955 [2023-12-05 10:14:44,472] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M01.o2797955 [2023-12-05 10:14:44,473] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M01.o2797955 [2023-12-05 10:14:44,477] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M01.o2797955 [2023-12-05 10:14:44,488] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M01.o2797955 [2023-12-05 10:14:44,495] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:14:44,498] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:14:44,503] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:14:44,538] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:14:44,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:14:44,543] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:14:44,550] multiqc [DEBUG ] 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pattern filesize limit: Step_02_G218_MACS2_G218M13.o2797963 [2023-12-05 10:14:44,633] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M13.o2797963 [2023-12-05 10:14:44,633] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M13.o2797963 [2023-12-05 10:14:44,646] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M13.o2797963 [2023-12-05 10:14:44,661] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M13.o2797963 [2023-12-05 10:14:44,694] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M16.o2797966 [2023-12-05 10:14:44,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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10:14:44,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M08.o2797962 [2023-12-05 10:14:44,753] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M08.o2797962 [2023-12-05 10:14:44,776] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M05.o2797959 [2023-12-05 10:14:44,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M05.o2797959 [2023-12-05 10:14:44,780] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M05.o2797959 [2023-12-05 10:14:44,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M05.o2797959 [2023-12-05 10:14:44,805] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G218_MACS2_G218M05.o2797959 [2023-12-05 10:14:44,845] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:44,857] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:44,857] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:44,864] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:44,865] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:44,912] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:44,938] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:44,941] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:44,941] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:44,946] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:44,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:45,007] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:45,047] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M05_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:45,052] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M05_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:45,052] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M05_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:45,058] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M05_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:45,058] multiqc [DEBUG ] File ignored by 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[2023-12-05 10:14:45,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M05_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:45,214] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M05_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:45,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M06_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:45,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M06_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:45,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M06_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:45,291] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 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[2023-12-05 10:14:45,492] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M01_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:45,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M01_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:45,547] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M01_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:45,556] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M01_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:45,559] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M01_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:45,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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[2023-12-05 10:14:45,751] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M07_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:45,759] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M07_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:45,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M07_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:45,806] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M07_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:45,841] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M16_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:45,844] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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[2023-12-05 10:14:46,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M03_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:46,060] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M03_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:46,067] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M03_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:46,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M03_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:46,114] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M03_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:46,140] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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[2023-12-05 10:14:46,338] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M15_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:46,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M15_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:46,342] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M15_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:46,347] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M15_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:46,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M15_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:46,403] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 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[2023-12-05 10:14:46,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M04_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:46,624] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M02_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:46,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M02_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:46,628] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M02_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:46,634] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M02_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:46,634] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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[2023-12-05 10:14:46,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M08_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:46,879] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M08_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.html [2023-12-05 10:14:46,909] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M08_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:46,919] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M08_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:46,920] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M08_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:46,928] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 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[2023-12-05 10:14:47,107] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M13_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:47,107] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M13_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:47,181] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M13_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.html [2023-12-05 10:14:47,215] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:47,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:47,219] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:47,224] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:47,235] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:47,252] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Trim_Galore.txt [2023-12-05 10:14:47,283] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Trim_Galore.txt [2023-12-05 10:14:47,291] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Trim_Galore.txt [2023-12-05 10:14:47,332] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Trim_Galore.qsub [2023-12-05 10:14:47,336] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Trim_Galore.qsub [2023-12-05 10:14:47,336] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Trim_Galore.qsub [2023-12-05 10:14:47,344] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Trim_Galore.qsub [2023-12-05 10:14:47,364] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Trim_Galore.qsub [2023-12-05 10:14:47,372] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:14:47,375] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:14:47,381] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:14:47,399] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:14:47,403] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:14:47,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:14:47,443] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:47,446] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:47,447] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:47,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:47,475] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:14:47,499] multiqc [DEBUG ] File ignored by 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[2023-12-05 10:14:52,223] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-12-05 10:14:52,228] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-12-05 10:14:52,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-12-05 10:14:52,237] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-12-05 10:14:52,267] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-12-05 10:14:52,355] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:14:52,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern 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[DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:14:52,375] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:14:52,375] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:14:52,410] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:14:53,805] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M07_read_Peak_Union.out1 [2023-12-05 10:14:53,929] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:53,933] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded 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10:14:53,940] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:53,940] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:53,940] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:53,966] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:55,334] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M05_read_Peak_Union.out1 [2023-12-05 10:14:55,463] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:14:55,467] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:14:55,467] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:14:55,474] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:14:55,474] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:14:55,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:14:55,474] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:14:55,474] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:14:55,474] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:14:55,474] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:14:55,474] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:14:55,500] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:14:56,792] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M01_read_Peak_Union.out1 [2023-12-05 10:14:56,903] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M02_read_Peak_Union.out1 [2023-12-05 10:14:56,908] multiqc [DEBUG ] File ignored by 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multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:14:58,389] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:14:58,395] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:14:58,395] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:14:58,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:14:58,396] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:14:58,396] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:14:58,396] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:14:58,396] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:14:58,396] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:14:58,424] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:14:59,750] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:14:59,851] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:59,855] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:59,855] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:59,861] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:59,862] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:59,862] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:59,862] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M16_read_Peak_Union.out1 [2023-12-05 10:14:59,862] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded 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[2023-12-05 10:15:01,302] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:15:01,302] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:15:01,309] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:15:01,309] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:15:01,309] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:15:01,309] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:15:01,309] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:15:01,309] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:15:01,309] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:15:01,310] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:15:01,337] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:15:02,666] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M06_read_Peak_Union.out1 [2023-12-05 10:15:02,743] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:15:02,746] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:15:02,747] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:15:02,752] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:15:02,752] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:15:02,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:15:02,752] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:15:02,752] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:15:02,752] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:15:02,752] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:15:02,752] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:15:02,849] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:15:04,165] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M08_read_Peak_Union.out1 [2023-12-05 10:15:04,259] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:15:04,264] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:15:04,265] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:15:04,270] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:15:04,270] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:15:04,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:15:04,271] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:15:04,271] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:15:04,271] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:15:04,271] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:15:04,271] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:15:04,297] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:15:05,577] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M15_read_Peak_Union.out1 [2023-12-05 10:15:05,674] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:05,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:05,685] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:05,691] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:05,692] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:05,692] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:05,692] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:05,692] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:05,692] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:05,692] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:05,693] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:05,722] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:07,053] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:07,157] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:07,161] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:07,162] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:07,168] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:07,168] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:07,168] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:07,169] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:07,169] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:07,169] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:07,169] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:07,169] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:07,196] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:08,564] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:08,680] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:15:08,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:15:08,685] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:15:08,692] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:15:08,692] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:15:08,692] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:15:08,692] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:15:08,692] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:15:08,692] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:15:08,692] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:15:08,692] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:15:08,719] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:15:10,070] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M14_read_Peak_Union.out1 [2023-12-05 10:15:10,143] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-12-05 10:15:10,150] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:15:10,153] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:15:10,153] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:15:10,160] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:15:10,184] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:15:10,219] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M16.o2806536 [2023-12-05 10:15:10,223] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M16.o2806536 [2023-12-05 10:15:10,223] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M16.o2806536 [2023-12-05 10:15:10,230] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M16.o2806536 [2023-12-05 10:15:10,242] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M16.o2806536 [2023-12-05 10:15:10,261] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M07.o2806531 [2023-12-05 10:15:10,264] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M07.o2806531 [2023-12-05 10:15:10,265] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M07.o2806531 [2023-12-05 10:15:10,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M07.o2806531 [2023-12-05 10:15:10,294] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M07.o2806531 [2023-12-05 10:15:10,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M04.o2806528 [2023-12-05 10:15:10,323] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M04.o2806528 [2023-12-05 10:15:10,324] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M04.o2806528 [2023-12-05 10:15:10,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M04.o2806528 [2023-12-05 10:15:10,340] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M04.o2806528 [2023-12-05 10:15:10,366] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M13.o2806533 [2023-12-05 10:15:10,371] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M13.o2806533 [2023-12-05 10:15:10,372] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M13.o2806533 [2023-12-05 10:15:10,378] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M13.o2806533 [2023-12-05 10:15:10,403] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M13.o2806533 [2023-12-05 10:15:10,470] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M14.o2806534 [2023-12-05 10:15:10,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M14.o2806534 [2023-12-05 10:15:10,474] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M14.o2806534 [2023-12-05 10:15:10,482] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M14.o2806534 [2023-12-05 10:15:10,504] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M14.o2806534 [2023-12-05 10:15:10,531] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M08.o2806532 [2023-12-05 10:15:10,535] multiqc [DEBUG ] File ignored by 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filesize limit: Step_07_G218_MACS2_G218M02.o2806526 [2023-12-05 10:15:10,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M02.o2806526 [2023-12-05 10:15:10,612] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M02.o2806526 [2023-12-05 10:15:10,646] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M01.o2806525 [2023-12-05 10:15:10,651] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M01.o2806525 [2023-12-05 10:15:10,651] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M01.o2806525 [2023-12-05 10:15:10,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M01.o2806525 [2023-12-05 10:15:10,669] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M01.o2806525 [2023-12-05 10:15:10,690] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M15.o2806535 [2023-12-05 10:15:10,695] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M15.o2806535 [2023-12-05 10:15:10,695] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M15.o2806535 [2023-12-05 10:15:10,701] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M15.o2806535 [2023-12-05 10:15:10,721] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M15.o2806535 [2023-12-05 10:15:10,756] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M03.o2806527 [2023-12-05 10:15:10,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M03.o2806527 [2023-12-05 10:15:10,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M03.o2806527 [2023-12-05 10:15:10,768] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M03.o2806527 [2023-12-05 10:15:10,780] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M03.o2806527 [2023-12-05 10:15:10,812] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:15:10,815] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:15:10,829] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:15:10,854] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-12-05 10:15:10,857] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-12-05 10:15:10,863] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-12-05 10:15:10,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-12-05 10:15:10,886] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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pattern filesize limit: Run_Jobs.sh [2023-12-05 10:15:10,954] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:15:10,995] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M06.o2806530 [2023-12-05 10:15:10,998] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M06.o2806530 [2023-12-05 10:15:10,999] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M06.o2806530 [2023-12-05 10:15:11,006] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M06.o2806530 [2023-12-05 10:15:11,016] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G218_MACS2_G218M06.o2806530 [2023-12-05 10:15:11,049] multiqc [DEBUG 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[2023-12-05 10:15:12,864] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G218_MACS2_G218M03.o2819886 [2023-12-05 10:15:12,882] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_14_G218_MACS2_G218M05.o2819889 [2023-12-05 10:15:12,886] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_14_G218_MACS2_G218M05.o2819889 [2023-12-05 10:15:12,887] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_14_G218_MACS2_G218M05.o2819889 [2023-12-05 10:15:12,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_14_G218_MACS2_G218M05.o2819889 [2023-12-05 10:15:12,909] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_14_G218_MACS2_G218M05.o2819889 [2023-12-05 10:15:12,916] multiqc [DEBUG ] File 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exceeded search pattern filesize limit: bigWigToWig [2023-12-05 10:15:13,333] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bedGraphToBigWig [2023-12-05 10:15:13,337] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bedGraphToBigWig [2023-12-05 10:15:13,338] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bedGraphToBigWig [2023-12-05 10:15:13,344] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: bedGraphToBigWig [2023-12-05 10:15:13,344] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bedGraphToBigWig [2023-12-05 10:15:13,354] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bedGraphToBigWig [2023-12-05 10:15:13,458] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:15:13,464] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:15:13,464] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:15:13,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:15:13,498] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:15:13,521] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M15.o2806863 [2023-12-05 10:15:13,524] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M15.o2806863 [2023-12-05 10:15:13,524] multiqc [DEBUG ] File ignored by lima/summary because it exceeded 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because it exceeded search pattern filesize limit: SICER.qsub [2023-12-05 10:15:13,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M04.o2806856 [2023-12-05 10:15:13,644] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M04.o2806856 [2023-12-05 10:15:13,644] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M04.o2806856 [2023-12-05 10:15:13,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M04.o2806856 [2023-12-05 10:15:13,669] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M04.o2806856 [2023-12-05 10:15:13,690] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M07.o2806859 [2023-12-05 10:15:13,694] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M07.o2806859 [2023-12-05 10:15:13,695] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M07.o2806859 [2023-12-05 10:15:13,702] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M07.o2806859 [2023-12-05 10:15:13,729] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M07.o2806859 [2023-12-05 10:15:13,752] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M03.o2806855 [2023-12-05 10:15:13,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M03.o2806855 [2023-12-05 10:15:13,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M03.o2806855 [2023-12-05 10:15:13,765] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M03.o2806855 [2023-12-05 10:15:13,784] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M03.o2806855 [2023-12-05 10:15:13,803] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M05.o2806857 [2023-12-05 10:15:13,807] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M05.o2806857 [2023-12-05 10:15:13,807] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M05.o2806857 [2023-12-05 10:15:13,814] multiqc [DEBUG ] 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README_macs2.sh [2023-12-05 10:15:13,995] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_macs2.sh [2023-12-05 10:15:14,000] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_macs2.sh [2023-12-05 10:15:14,039] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M06.o2806858 [2023-12-05 10:15:14,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M06.o2806858 [2023-12-05 10:15:14,048] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M06.o2806858 [2023-12-05 10:15:14,054] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08c_G218_MACS2_G218M06.o2806858 [2023-12-05 10:15:14,072] multiqc [DEBUG ] File ignored 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[2023-12-05 10:15:16,363] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01-W400-G2400-E100.scoreisland.bed [2023-12-05 10:15:16,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02-W400-G2400-E100.scoreisland.bed [2023-12-05 10:15:16,365] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15-W400-G2400-E100.scoreisland.bed [2023-12-05 10:15:16,365] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08-W400-G2400-E100.scoreisland.bed [2023-12-05 10:15:16,367] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03-W400-G2400-E100.scoreisland.bed [2023-12-05 10:15:16,367] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06-W400-G2400-E100.scoreisland.bed [2023-12-05 10:15:16,368] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07-W400-G2400-E100.scoreisland.bed [2023-12-05 10:15:16,369] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13-W400-G2400-E100.scoreisland.bed [2023-12-05 10:15:16,370] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-12-05 10:15:16,379] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-12-05 10:15:16,382] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-12-05 10:15:16,383] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-12-05 10:15:16,388] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-12-05 10:15:16,407] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Generate_Tracks.sh [2023-12-05 10:15:16,433] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Generate_Tracks.sh 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search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:15:16,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: chrom_state_legend.pdf [2023-12-05 10:15:16,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218_MACS2_Tracks_PileUp.txt [2023-12-05 10:15:16,541] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218_MACS2_Tracks_PileUp.txt [2023-12-05 10:15:16,542] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218_MACS2_Tracks_PileUp.txt [2023-12-05 10:15:16,546] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218_MACS2_Tracks_PileUp.txt [2023-12-05 10:15:16,555] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218_MACS2_Tracks_PileUp.txt [2023-12-05 10:15:16,562] multiqc [DEBUG ] File ignored by ccs/v4 because 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exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:15:16,644] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:15:16,661] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M03.o2806556 [2023-12-05 10:15:16,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M03.o2806556 [2023-12-05 10:15:16,664] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M03.o2806556 [2023-12-05 10:15:16,669] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M03.o2806556 [2023-12-05 10:15:16,684] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M03.o2806556 [2023-12-05 10:15:16,692] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: macs2.qsub [2023-12-05 10:15:16,694] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: macs2.qsub [2023-12-05 10:15:16,694] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: macs2.qsub [2023-12-05 10:15:16,699] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: macs2.qsub [2023-12-05 10:15:16,716] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: macs2.qsub [2023-12-05 10:15:16,748] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M05.o2806558 [2023-12-05 10:15:16,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M05.o2806558 [2023-12-05 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[2023-12-05 10:15:17,020] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M04.o2806557 [2023-12-05 10:15:17,024] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M04.o2806557 [2023-12-05 10:15:17,039] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M04.o2806557 [2023-12-05 10:15:17,046] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_macs2.sh [2023-12-05 10:15:17,048] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_macs2.sh [2023-12-05 10:15:17,052] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_macs2.sh [2023-12-05 10:15:17,084] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search 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[2023-12-05 10:15:17,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:15:17,160] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:15:17,170] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:15:17,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M01.o2806554 [2023-12-05 10:15:17,206] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M01.o2806554 [2023-12-05 10:15:17,206] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M01.o2806554 [2023-12-05 10:15:17,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M01.o2806554 [2023-12-05 10:15:17,227] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M01.o2806554 [2023-12-05 10:15:17,248] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M06.o2806559 [2023-12-05 10:15:17,250] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M06.o2806559 [2023-12-05 10:15:17,251] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M06.o2806559 [2023-12-05 10:15:17,255] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M06.o2806559 [2023-12-05 10:15:17,269] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 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10:15:17,343] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M16.o2806565 [2023-12-05 10:15:17,344] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M16.o2806565 [2023-12-05 10:15:17,348] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M16.o2806565 [2023-12-05 10:15:17,362] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G218_MACS2_G218M16.o2806565 [2023-12-05 10:15:17,393] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: overlap.R [2023-12-05 10:15:17,396] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: overlap.R [2023-12-05 10:15:17,397] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: overlap.R [2023-12-05 10:15:17,402] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: overlap.R [2023-12-05 10:15:17,413] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: overlap.R [2023-12-05 10:15:17,435] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: overlap.sh [2023-12-05 10:15:17,438] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: overlap.sh [2023-12-05 10:15:17,439] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: overlap.sh [2023-12-05 10:15:17,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: overlap.sh [2023-12-05 10:15:17,457] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: overlap.sh [2023-12-05 10:15:17,465] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-12-05 10:15:17,468] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-12-05 10:15:17,472] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-12-05 10:15:17,535] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Peak_Counts.sh [2023-12-05 10:15:17,551] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Peak_Counts.sh [2023-12-05 10:15:17,589] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-12-05 10:15:17,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-12-05 10:15:17,594] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-12-05 10:15:17,606] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-12-05 10:15:17,617] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-12-05 10:15:17,644] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-12-05 10:15:17,647] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-12-05 10:15:17,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-12-05 10:15:17,725] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:15:17,729] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:15:17,730] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:15:17,735] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:15:17,735] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:15:17,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:15:17,735] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:15:17,735] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:15:17,735] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:15:17,735] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:15:17,735] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:15:17,735] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:15:17,742] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:15:17,749] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-12-05 10:15:17,751] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-12-05 10:15:17,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-12-05 10:15:17,796] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: MACS2_Peak_Width.txt [2023-12-05 10:15:17,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: MACS2_Peak_Width.txt [2023-12-05 10:15:17,832] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: ENCODE_Blacklist_Overlap_Summary.txt [2023-12-05 10:15:17,834] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: ENCODE_Blacklist_Overlap_Summary.txt [2023-12-05 10:15:17,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: ENCODE_Blacklist_Overlap_Summary.txt [2023-12-05 10:15:17,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Chr_Peak_Counts.pdf [2023-12-05 10:15:17,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,878] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M07_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M16_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M15_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M05_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,886] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M14_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M02_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,888] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M08_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,889] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,891] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M01_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,894] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M06_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,895] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:17,896] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-12-05 10:15:17,901] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:15:17,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:15:17,905] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_alignments.bam.bai [2023-12-05 10:15:17,906] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_sorted_mapped.bam.bai [2023-12-05 10:15:17,906] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_alignments.bam [2023-12-05 10:15:17,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_sorted_mapped.bam [2023-12-05 10:15:17,945] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:15:17,948] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:15:17,948] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:15:17,952] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:15:17,952] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:15:17,952] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:15:17,952] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:15:17,952] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:15:17,952] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:15:17,952] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:15:17,952] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:15:17,978] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:15:19,302] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M13_read_Peak_Union.out1 [2023-12-05 10:15:19,383] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_StrgtPksRm_tab.bed [2023-12-05 10:15:19,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_filtered_StrgtPks_sorted.bam [2023-12-05 10:15:19,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:15:19,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_StrgtPks_tab.bed [2023-12-05 10:15:19,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_filtered_StrgtPks.bam.bai [2023-12-05 10:15:19,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_filtered_StrgtPks.bam [2023-12-05 10:15:19,387] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:15:19,452] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:19,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:19,459] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:19,478] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:19,478] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:19,479] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:19,479] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:19,479] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:19,479] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:19,479] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:19,480] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:19,480] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:19,480] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:20,671] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:20,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_narrow_MACS2_summits.bed [2023-12-05 10:15:20,738] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:20,745] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:20,748] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:20,749] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:20,761] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:20,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:20,762] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:20,762] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:20,762] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:20,762] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:20,762] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:20,775] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:20,789] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M13_read_MACS2_peaks.out1 [2023-12-05 10:15:20,792] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M13_read_MACS2_peaks.out1 [2023-12-05 10:15:20,793] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M13_read_MACS2_peaks.out1 [2023-12-05 10:15:20,798] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M13_read_MACS2_peaks.out1 [2023-12-05 10:15:20,798] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M13_read_MACS2_peaks.out1 [2023-12-05 10:15:20,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M13_read_MACS2_peaks.out1 [2023-12-05 10:15:20,798] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M13_read_MACS2_peaks.out1 [2023-12-05 10:15:20,798] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M13_read_MACS2_peaks.out1 [2023-12-05 10:15:20,798] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M13_read_MACS2_peaks.out1 [2023-12-05 10:15:20,798] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M13_read_MACS2_peaks.out1 [2023-12-05 10:15:20,798] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M13_read_MACS2_peaks.out1 [2023-12-05 10:15:20,808] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M13_read_MACS2_peaks.out1 [2023-12-05 10:15:21,307] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M13_read_MACS2_peaks.out1 [2023-12-05 10:15:21,375] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:21,380] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:21,380] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:21,387] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:21,387] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:21,387] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:21,387] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:21,387] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:21,387] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:21,387] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:21,387] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:21,397] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:21,918] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:21,981] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:21,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:21,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:21,992] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:21,992] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:21,992] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:21,992] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:21,992] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:21,992] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:21,992] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:21,993] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:22,021] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:23,111] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M13_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:23,176] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:23,179] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:23,179] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:23,185] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:23,185] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:23,192] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M13_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:23,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:15:23,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:15:23,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:15:23,205] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:15:23,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:15:23,230] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:15:23,230] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:15:23,230] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:15:23,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13-1-removed.bed [2023-12-05 10:15:23,307] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:23,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:23,312] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:23,325] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:23,325] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:23,326] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:23,326] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:23,326] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:23,326] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:23,326] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:23,326] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:23,326] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:23,326] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:30,394] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:30,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:15:30,849] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland [2023-12-05 10:15:30,851] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland [2023-12-05 10:15:30,851] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland [2023-12-05 10:15:30,855] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland [2023-12-05 10:15:30,855] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland [2023-12-05 10:15:30,855] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland [2023-12-05 10:15:30,856] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland [2023-12-05 10:15:30,856] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland [2023-12-05 10:15:30,856] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland [2023-12-05 10:15:30,856] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland [2023-12-05 10:15:31,216] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland [2023-12-05 10:15:31,240] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:31,242] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:31,242] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:31,245] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:31,246] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:31,252] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M13-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:31,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:15:31,283] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M13_read_SICER.out1 [2023-12-05 10:15:31,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M13_read_SICER.out1 [2023-12-05 10:15:31,287] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M13_read_SICER.out1 [2023-12-05 10:15:31,294] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M13_read_SICER.out1 [2023-12-05 10:15:31,294] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M13_read_SICER.out1 [2023-12-05 10:15:31,294] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M13_read_SICER.out1 [2023-12-05 10:15:31,294] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M13_read_SICER.out1 [2023-12-05 10:15:31,294] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M13_read_SICER.out1 [2023-12-05 10:15:31,294] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M13_read_SICER.out1 [2023-12-05 10:15:31,294] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M13_read_SICER.out1 [2023-12-05 10:15:31,667] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M13_read_SICER.out1 [2023-12-05 10:15:31,694] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:15:31,701] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:15:31,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:15:31,726] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:15:31,726] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:15:31,726] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:15:31,727] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:15:31,727] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:15:31,753] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M13_metrics [2023-12-05 10:15:31,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M13_metrics [2023-12-05 10:15:31,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M13_metrics [2023-12-05 10:15:31,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M13_metrics [2023-12-05 10:15:31,782] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M13_metrics [2023-12-05 10:15:31,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M13_hist.pdf [2023-12-05 10:15:31,804] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:15:31,807] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:15:31,811] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_sorted_mapped.bam [2023-12-05 10:15:31,812] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_alignments.bam [2023-12-05 10:15:31,812] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_sorted_mapped.bam.bai [2023-12-05 10:15:31,840] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_alignments.bam.bai [2023-12-05 10:15:31,847] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:31,850] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:31,851] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:31,857] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:31,857] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:31,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:31,857] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:31,857] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:31,857] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:31,857] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:31,857] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:31,882] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:33,193] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M03_read_Peak_Union.out1 [2023-12-05 10:15:33,300] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:33,304] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:33,305] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:33,311] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:33,312] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:33,312] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:33,312] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:33,312] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:33,312] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:33,312] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:33,511] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:33,558] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:33,562] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:33,563] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:33,569] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:33,570] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:33,570] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:33,570] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:33,570] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:33,570] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:33,570] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:33,792] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:33,805] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:15:33,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_narrow_MACS2_summits.bed [2023-12-05 10:15:33,830] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:33,835] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:33,835] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:33,848] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:33,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:33,859] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M03_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:33,910] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M03_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:33,915] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M03_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:33,915] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M03_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:33,922] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M03_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:33,922] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M03_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:33,997] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M03_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:34,023] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M03_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:34,027] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M03_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:34,028] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M03_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:34,034] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M03_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:34,042] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M03_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:34,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M03_read_MACS2_peaks.out1 [2023-12-05 10:15:34,053] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M03_read_MACS2_peaks.out1 [2023-12-05 10:15:34,054] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M03_read_MACS2_peaks.out1 [2023-12-05 10:15:34,067] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M03_read_MACS2_peaks.out1 [2023-12-05 10:15:34,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M03_read_MACS2_peaks.out1 [2023-12-05 10:15:34,130] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M03_read_MACS2_peaks.out1 [2023-12-05 10:15:34,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:34,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:15:34,138] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:15:34,144] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:15:34,147] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:15:34,171] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:15:34,171] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:15:34,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:15:34,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:15:34,173] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_filtered_StrgtPks_sorted.bam [2023-12-05 10:15:34,173] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_StrgtPks_tab.bed [2023-12-05 10:15:34,173] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_filtered_StrgtPks.bam [2023-12-05 10:15:34,174] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_StrgtPksRm_tab.bed [2023-12-05 10:15:34,174] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_filtered_StrgtPks.bam.bai [2023-12-05 10:15:34,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:15:34,200] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M03_metrics [2023-12-05 10:15:34,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M03_metrics [2023-12-05 10:15:34,204] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M03_metrics [2023-12-05 10:15:34,211] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M03_metrics [2023-12-05 10:15:34,226] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M03_metrics [2023-12-05 10:15:34,227] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03_hist.pdf [2023-12-05 10:15:34,253] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M03_read_SICER.out1 [2023-12-05 10:15:34,257] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M03_read_SICER.out1 [2023-12-05 10:15:34,258] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M03_read_SICER.out1 [2023-12-05 10:15:34,265] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M03_read_SICER.out1 [2023-12-05 10:15:34,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M03_read_SICER.out1 [2023-12-05 10:15:34,265] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M03_read_SICER.out1 [2023-12-05 10:15:34,265] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M03_read_SICER.out1 [2023-12-05 10:15:34,265] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M03_read_SICER.out1 [2023-12-05 10:15:34,265] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M03_read_SICER.out1 [2023-12-05 10:15:34,265] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M03_read_SICER.out1 [2023-12-05 10:15:34,535] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M03_read_SICER.out1 [2023-12-05 10:15:34,558] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100.scoreisland [2023-12-05 10:15:34,561] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100.scoreisland [2023-12-05 10:15:34,561] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100.scoreisland [2023-12-05 10:15:34,567] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100.scoreisland [2023-12-05 10:15:34,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100.scoreisland [2023-12-05 10:15:34,816] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100.scoreisland [2023-12-05 10:15:34,828] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:15:34,859] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:34,863] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:34,864] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:34,870] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:34,870] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:34,878] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:34,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:15:34,946] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:34,949] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:34,950] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:34,963] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:34,963] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:34,963] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:34,963] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:34,963] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:34,963] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:34,963] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:34,963] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:34,963] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:34,963] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:46,122] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M03-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:15:48,141] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03-1-removed.bed [2023-12-05 10:15:48,142] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:15:48,143] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:15:48,143] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:15:48,148] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:15:48,151] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:15:48,166] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:15:48,166] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:15:48,166] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M03-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:15:48,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:15:48,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:15:48,176] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_sorted_mapped.bam.bai [2023-12-05 10:15:48,201] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_sorted_mapped.bam [2023-12-05 10:15:48,202] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_alignments.bam [2023-12-05 10:15:48,202] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_alignments.bam.bai [2023-12-05 10:15:48,207] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:48,210] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:48,210] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:48,214] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:48,214] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:48,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:48,214] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:48,214] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:48,214] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:48,214] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:48,214] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:48,239] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:49,568] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M04_read_Peak_Union.out1 [2023-12-05 10:15:49,647] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_StrgtPksRm_tab.bed [2023-12-05 10:15:49,648] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_filtered_StrgtPks.bam.bai [2023-12-05 10:15:49,648] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:15:49,648] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_filtered_StrgtPks_sorted.bam [2023-12-05 10:15:49,648] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_StrgtPks_tab.bed [2023-12-05 10:15:49,649] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_filtered_StrgtPks.bam [2023-12-05 10:15:49,669] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M04_metrics [2023-12-05 10:15:49,673] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M04_metrics [2023-12-05 10:15:49,674] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M04_metrics [2023-12-05 10:15:49,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M04_metrics [2023-12-05 10:15:49,700] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M04_metrics [2023-12-05 10:15:49,702] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_hist.pdf [2023-12-05 10:15:49,703] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:15:49,727] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M04_read_SICER.out1 [2023-12-05 10:15:49,732] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M04_read_SICER.out1 [2023-12-05 10:15:49,733] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M04_read_SICER.out1 [2023-12-05 10:15:49,740] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M04_read_SICER.out1 [2023-12-05 10:15:49,740] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M04_read_SICER.out1 [2023-12-05 10:15:49,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M04_read_SICER.out1 [2023-12-05 10:15:49,740] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M04_read_SICER.out1 [2023-12-05 10:15:49,740] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M04_read_SICER.out1 [2023-12-05 10:15:49,740] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M04_read_SICER.out1 [2023-12-05 10:15:49,740] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M04_read_SICER.out1 [2023-12-05 10:15:49,740] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M04_read_SICER.out1 [2023-12-05 10:15:49,757] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M04_read_SICER.out1 [2023-12-05 10:15:50,220] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M04_read_SICER.out1 [2023-12-05 10:15:50,272] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04-1-removed.bed [2023-12-05 10:15:50,278] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:50,281] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:50,282] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:50,286] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:50,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:50,294] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland.bb [2023-12-05 10:15:50,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:15:50,305] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland [2023-12-05 10:15:50,309] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland [2023-12-05 10:15:50,310] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland [2023-12-05 10:15:50,315] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland [2023-12-05 10:15:50,316] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland [2023-12-05 10:15:50,316] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland [2023-12-05 10:15:50,316] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland [2023-12-05 10:15:50,316] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland [2023-12-05 10:15:50,316] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland [2023-12-05 10:15:50,316] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland [2023-12-05 10:15:50,759] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M04-W400-G2400-E100.scoreisland [2023-12-05 10:15:50,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:15:50,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:15:50,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:15:50,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:15:50,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:15:50,811] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:15:50,817] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:15:50,833] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:15:50,895] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:50,899] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:50,900] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:50,905] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:50,905] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:50,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:50,905] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:50,905] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:50,905] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:50,905] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:50,906] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:50,913] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:51,261] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak [2023-12-05 10:15:51,286] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M04_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:51,289] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M04_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:51,289] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M04_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:51,294] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M04_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:51,294] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M04_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:51,304] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M04_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:15:51,328] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M04_read_MACS2_peaks.out1 [2023-12-05 10:15:51,333] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M04_read_MACS2_peaks.out1 [2023-12-05 10:15:51,334] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M04_read_MACS2_peaks.out1 [2023-12-05 10:15:51,347] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M04_read_MACS2_peaks.out1 [2023-12-05 10:15:51,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M04_read_MACS2_peaks.out1 [2023-12-05 10:15:51,491] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M04_read_MACS2_peaks.out1 [2023-12-05 10:15:51,499] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_narrow_MACS2_summits.bed [2023-12-05 10:15:51,533] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:51,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:51,537] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:51,543] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:51,543] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:51,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:51,544] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:51,544] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:51,544] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:51,544] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:51,544] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:51,561] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:51,943] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.gappedPeak [2023-12-05 10:15:51,971] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:51,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:51,973] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:51,978] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:51,978] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:51,986] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M04_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:15:51,989] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:15:52,016] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M04_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:52,020] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M04_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:52,020] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M04_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:52,026] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M04_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:52,026] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M04_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:52,192] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M04_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:15:52,200] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:15:52,201] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:15:52,212] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:15:52,215] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:15:52,230] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:15:52,231] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:15:52,231] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:15:52,231] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M04_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:15:52,232] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:15:52,891] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.1.2 [2023-12-05 10:15:53,948] multiqc.modules.macs2.macs2 [INFO ] Found 24 logs [2023-12-05 10:15:53,958] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.1.2 [2023-12-05 10:15:54,026] multiqc.modules.picard.picard [INFO ] Found 12 InsertSizeMetrics reports [2023-12-05 10:15:54,047] multiqc.modules.samtools.samtools [INFO ] Found 12 flagstat reports [2023-12-05 10:15:54,054] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M07_idxstats [2023-12-05 10:15:54,055] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M02_idxstats [2023-12-05 10:15:54,072] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M05_idxstats [2023-12-05 10:15:54,074] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M01_idxstats [2023-12-05 10:15:54,075] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M16_idxstats [2023-12-05 10:15:54,076] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M14_idxstats [2023-12-05 10:15:54,079] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M06_idxstats [2023-12-05 10:15:54,081] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M08_idxstats [2023-12-05 10:15:54,083] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M15_idxstats [2023-12-05 10:15:54,085] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M07_idxstats [2023-12-05 10:15:54,086] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M02_idxstats [2023-12-05 10:15:54,087] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M05_idxstats [2023-12-05 10:15:54,088] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M01_idxstats [2023-12-05 10:15:54,088] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M16_idxstats [2023-12-05 10:15:54,089] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M14_idxstats [2023-12-05 10:15:54,090] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M03_idxstats [2023-12-05 10:15:54,090] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M06_idxstats [2023-12-05 10:15:54,091] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M04_idxstats [2023-12-05 10:15:54,092] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M08_idxstats [2023-12-05 10:15:54,092] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M15_idxstats [2023-12-05 10:15:54,093] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M13_idxstats [2023-12-05 10:15:54,093] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M13_idxstats [2023-12-05 10:15:54,094] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M03_idxstats [2023-12-05 10:15:54,095] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M04_idxstats [2023-12-05 10:15:54,102] multiqc.modules.samtools.samtools [INFO ] Found 12 idxstats reports [2023-12-05 10:15:54,110] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M04_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:15:54,113] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M06_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:15:54,114] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M03_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:15:54,116] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M08_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:15:54,117] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M14_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:15:54,120] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M16_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:15:54,121] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M05_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:15:54,123] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M07_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:15:54,127] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M15_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:15:54,130] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M13_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:15:54,131] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M01_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:15:54,133] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M02_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:15:54,134] multiqc.modules.bowtie2.bowtie2 [INFO ] Found 13 reports [2023-12-05 10:15:58,555] multiqc.modules.fastqc.fastqc [INFO ] Found 24 reports [2023-12-05 10:15:59,320] multiqc [INFO ] Compressing plot data [2023-12-05 10:16:00,212] multiqc [INFO ] Report : Job_Summary/G218_MACS2_MULTIQC/multiqc_report.html [2023-12-05 10:16:00,213] multiqc [INFO ] Data : Job_Summary/G218_MACS2_MULTIQC/multiqc_data [2023-12-05 10:16:00,213] multiqc [DEBUG ] Moving data file from '/scratch/tmptjlvcj_t/multiqc_data' to 'Job_Summary/G218_MACS2_MULTIQC/multiqc_data' [2023-12-05 10:16:00,361] multiqc [INFO ] MultiQC complete