Module	Section	Sample Name	Source
MACS2	all_sections	G218M11_narrow_MACS2	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M11/fastq/bowtie2/G218M11_MACS2_output/G218M11_narrow_MACS2_peaks.xls
MACS2	all_sections	G218M11_broad_MACS2	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M11/fastq/bowtie2/G218M11_MACS2_output/G218M11_broad_MACS2_peaks.xls
MACS2	all_sections	G218M12_broad_MACS2	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M12/fastq/bowtie2/G218M12_MACS2_output/G218M12_broad_MACS2_peaks.xls
MACS2	all_sections	G218M12_narrow_MACS2	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M12/fastq/bowtie2/G218M12_MACS2_output/G218M12_narrow_MACS2_peaks.xls
MACS2	all_sections	G218M10_broad_MACS2	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M10/fastq/bowtie2/G218M10_MACS2_output/G218M10_broad_MACS2_peaks.xls
MACS2	all_sections	G218M10_narrow_MACS2	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M10/fastq/bowtie2/G218M10_MACS2_output/G218M10_narrow_MACS2_peaks.xls
MACS2	all_sections	G218M09_broad_MACS2	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M09/fastq/bowtie2/G218M09_MACS2_output/G218M09_broad_MACS2_peaks.xls
MACS2	all_sections	G218M09_narrow_MACS2	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M09/fastq/bowtie2/G218M09_MACS2_output/G218M09_narrow_MACS2_peaks.xls
Picard	InsertSizeMetrics	G218M11_sorted_mapped	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M11/fastq/bowtie2/CollectInsertSizeMetrics/G218M11_metrics
Picard	InsertSizeMetrics	G218M12_sorted_mapped	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M12/fastq/bowtie2/CollectInsertSizeMetrics/G218M12_metrics
Picard	InsertSizeMetrics	G218M10_sorted_mapped	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M10/fastq/bowtie2/CollectInsertSizeMetrics/G218M10_metrics
Picard	InsertSizeMetrics	G218M09_sorted_mapped	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M09/fastq/bowtie2/CollectInsertSizeMetrics/G218M09_metrics
Samtools	flagstat	flagstat_G218M11	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M11/fastq/bowtie2/flagstat_G218M11.txt
Samtools	flagstat	flagstat_G218M12	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M12/fastq/bowtie2/flagstat_G218M12.txt
Samtools	flagstat	flagstat_G218M10	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M10/fastq/bowtie2/flagstat_G218M10.txt
Samtools	flagstat	flagstat_G218M09	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/G218M09/fastq/bowtie2/flagstat_G218M09.txt
Samtools	idxstats	G218M11_idxstats	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G218M11_idxstats.out
Samtools	idxstats	G218M12_idxstats	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G218M12_idxstats.out
Samtools	idxstats	G218M10_idxstats	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G218M10_idxstats.out
Samtools	idxstats	G218M09_idxstats	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/05_BAM_Count/Job_Summary/Chr_Read_Counts/G218M09_idxstats.out
Bowtie 2 / HiSAT2	all_sections	G218M12_CKDL230039433-1A_HHVHMDSX7_L3_R1	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/04_Bowtie2/Step_04_G218_H3K27me3_SICER_G218M12.o2798927
Bowtie 2 / HiSAT2	all_sections	G218M09_CKDL230039433-1A_HHVHMDSX7_L3_R1	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/04_Bowtie2/Step_04_G218_H3K27me3_SICER_G218M09.o2798924
Bowtie 2 / HiSAT2	all_sections	README_Bowtie2.sh	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/04_Bowtie2/README_Bowtie2.sh
Bowtie 2 / HiSAT2	all_sections	G218M10_CKDL230039433-1A_HHVHMDSX7_L3_R1	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/04_Bowtie2/Step_04_G218_H3K27me3_SICER_G218M10.o2798925
Bowtie 2 / HiSAT2	all_sections	G218M11_CKDL230039433-1A_HHVHMDSX7_L3_R1	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/04_Bowtie2/Step_04_G218_H3K27me3_SICER_G218M11.o2798926
FastQC	all_sections	G218M11_CKDL230039433-1A_HHVHMDSX7_L3_R2	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/02_FASTQC/Job_Summary/G218M11_FASTQC/G218M11_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G218M11_CKDL230039433-1A_HHVHMDSX7_L3_R1	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/02_FASTQC/Job_Summary/G218M11_FASTQC/G218M11_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G218M09_CKDL230039433-1A_HHVHMDSX7_L3_R1	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/02_FASTQC/Job_Summary/G218M09_FASTQC/G218M09_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G218M09_CKDL230039433-1A_HHVHMDSX7_L3_R2	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/02_FASTQC/Job_Summary/G218M09_FASTQC/G218M09_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G218M10_CKDL230039433-1A_HHVHMDSX7_L3_R1	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/02_FASTQC/Job_Summary/G218M10_FASTQC/G218M10_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G218M10_CKDL230039433-1A_HHVHMDSX7_L3_R2	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/02_FASTQC/Job_Summary/G218M10_FASTQC/G218M10_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.zip
FastQC	all_sections	G218M12_CKDL230039433-1A_HHVHMDSX7_L3_R1	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/02_FASTQC/Job_Summary/G218M12_FASTQC/G218M12_CKDL230039433-1A_HHVHMDSX7_L3_R1_fastqc.zip
FastQC	all_sections	G218M12_CKDL230039433-1A_HHVHMDSX7_L3_R2	/projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/02_FASTQC/Job_Summary/G218M12_FASTQC/G218M12_CKDL230039433-1A_HHVHMDSX7_L3_R2_fastqc.zip