[2023-12-05 10:16:29,106] multiqc [DEBUG ] This is MultiQC v1.12 [2023-12-05 10:16:29,106] multiqc [DEBUG ] No MultiQC config found: /usr/lib/python3.8/site-packages/multiqc_config.yaml [2023-12-05 10:16:29,106] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2023-12-05 10:16:29,106] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-12-05 10:16:29,106] multiqc [DEBUG ] Command used: /usr/bin/multiqc /projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204 -o Job_Summary/G218_H3K27me3_SICER_MULTIQC [2023-12-05 10:16:29,318] multiqc [WARNING] MultiQC Version v1.17 now available! [2023-12-05 10:16:29,318] multiqc [DEBUG ] Command : /usr/bin/multiqc /projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204 -o Job_Summary/G218_H3K27me3_SICER_MULTIQC [2023-12-05 10:16:29,318] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G218_SG_CHIP_SICER_20231204/Scripts/16_MULTIQC [2023-12-05 10:16:29,318] multiqc [DEBUG ] Template : default [2023-12-05 10:16:29,318] multiqc [DEBUG ] Running Python 3.8.1 (default, Dec 26 2019, 14:42:08) [GCC 9.2.0] [2023-12-05 10:16:29,320] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2023-12-05 10:16:29,320] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpvuobhmnn [2023-12-05 10:16:29,452] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G218_SG_CHIP_SICER_20231204 [2023-12-05 10:16:29,996] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-12-05 10:16:30,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-12-05 10:16:30,000] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-12-05 10:16:30,007] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-12-05 10:16:30,021] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_Paired_End_Reads.txt [2023-12-05 10:16:30,030] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: copy_from_indexfile.py [2023-12-05 10:16:30,033] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: copy_from_indexfile.py [2023-12-05 10:16:30,076] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: copy_samples.py [2023-12-05 10:16:30,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: copy_samples.py [2023-12-05 10:16:30,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: copy_samples.py [2023-12-05 10:16:30,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: copy_samples.py [2023-12-05 10:16:30,099] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: copy_samples.py [2023-12-05 10:16:30,150] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-12-05 10:16:30,153] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-12-05 10:16:30,154] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-12-05 10:16:30,170] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-12-05 10:16:30,185] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.txt [2023-12-05 10:16:30,209] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-12-05 10:16:30,213] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-12-05 10:16:30,213] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-12-05 10:16:30,219] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-12-05 10:16:30,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-12-05 10:16:30,228] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: DNAChIPseq_pipeline.docx [2023-12-05 10:16:30,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: DNAChIPseq_pipeline.pdf [2023-12-05 10:16:30,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:16:30,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:16:30,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_alignments.bam [2023-12-05 10:16:30,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_sorted_mapped.bam [2023-12-05 10:16:30,248] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_alignments.bam.bai [2023-12-05 10:16:30,249] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_sorted_mapped.bam.bai [2023-12-05 10:16:30,278] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:30,281] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:30,282] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:30,287] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:30,287] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:30,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:30,287] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:30,287] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:30,287] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:30,287] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:30,287] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:30,302] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:31,054] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:31,208] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:31,213] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:31,214] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:31,220] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:31,220] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:31,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:31,220] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:31,220] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:31,220] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:31,220] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:31,220] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:31,220] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:31,220] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:33,346] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:33,471] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:33,473] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:33,473] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:33,477] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:33,477] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:33,483] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M11_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:33,484] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:16:33,491] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:33,493] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:33,494] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:33,497] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:33,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:33,497] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:33,497] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:33,498] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:33,498] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:33,498] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:33,511] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:33,513] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:16:33,559] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:33,563] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:33,564] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:33,571] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:33,571] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:33,571] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:33,571] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:33,571] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:33,571] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:33,571] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:33,571] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:33,571] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:33,571] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:35,540] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M11_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:35,659] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M11_read_MACS2_peaks.out1 [2023-12-05 10:16:35,661] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M11_read_MACS2_peaks.out1 [2023-12-05 10:16:35,662] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M11_read_MACS2_peaks.out1 [2023-12-05 10:16:35,666] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M11_read_MACS2_peaks.out1 [2023-12-05 10:16:35,666] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M11_read_MACS2_peaks.out1 [2023-12-05 10:16:35,666] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M11_read_MACS2_peaks.out1 [2023-12-05 10:16:35,666] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M11_read_MACS2_peaks.out1 [2023-12-05 10:16:35,666] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M11_read_MACS2_peaks.out1 [2023-12-05 10:16:35,666] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M11_read_MACS2_peaks.out1 [2023-12-05 10:16:35,666] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M11_read_MACS2_peaks.out1 [2023-12-05 10:16:35,666] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M11_read_MACS2_peaks.out1 [2023-12-05 10:16:35,725] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M11_read_MACS2_peaks.out1 [2023-12-05 10:16:36,447] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M11_read_MACS2_peaks.out1 [2023-12-05 10:16:36,491] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_narrow_MACS2_summits.bed [2023-12-05 10:16:36,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:16:36,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:16:36,502] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:16:36,507] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:16:36,524] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:16:36,525] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:16:36,525] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:16:36,525] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:16:36,580] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M11_read_SICER.out1 [2023-12-05 10:16:36,584] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M11_read_SICER.out1 [2023-12-05 10:16:36,585] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M11_read_SICER.out1 [2023-12-05 10:16:36,591] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M11_read_SICER.out1 [2023-12-05 10:16:36,591] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M11_read_SICER.out1 [2023-12-05 10:16:36,591] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M11_read_SICER.out1 [2023-12-05 10:16:36,592] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M11_read_SICER.out1 [2023-12-05 10:16:36,592] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M11_read_SICER.out1 [2023-12-05 10:16:36,592] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M11_read_SICER.out1 [2023-12-05 10:16:36,592] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M11_read_SICER.out1 [2023-12-05 10:16:37,024] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M11_read_SICER.out1 [2023-12-05 10:16:37,085] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland [2023-12-05 10:16:37,087] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland [2023-12-05 10:16:37,087] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland [2023-12-05 10:16:37,092] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland [2023-12-05 10:16:37,092] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland [2023-12-05 10:16:37,092] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland [2023-12-05 10:16:37,092] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland [2023-12-05 10:16:37,092] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland [2023-12-05 10:16:37,092] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland [2023-12-05 10:16:37,092] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland [2023-12-05 10:16:37,472] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland [2023-12-05 10:16:37,510] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:37,512] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:37,513] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:37,517] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:37,518] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:37,526] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M11-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:37,528] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:16:37,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11-1-removed.bed [2023-12-05 10:16:37,532] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:16:37,532] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:16:37,533] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:16:37,533] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:16:37,540] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:16:37,543] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:16:37,555] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:16:37,556] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:16:37,556] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:16:37,560] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:16:37,562] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:16:37,563] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:16:37,567] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:16:37,567] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:16:37,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:16:37,568] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:16:37,568] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:16:37,568] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:16:37,568] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:16:37,568] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:16:37,580] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:16:38,213] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:16:38,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:16:38,256] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_filtered_StrgtPks.bam [2023-12-05 10:16:38,270] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_filtered_StrgtPks.bam.bai [2023-12-05 10:16:38,271] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_StrgtPks_tab.bed [2023-12-05 10:16:38,271] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_StrgtPksRm_tab.bed [2023-12-05 10:16:38,271] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_filtered_StrgtPks_sorted.bam [2023-12-05 10:16:38,301] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M11_metrics [2023-12-05 10:16:38,306] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M11_metrics [2023-12-05 10:16:38,306] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M11_metrics [2023-12-05 10:16:38,312] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M11_metrics [2023-12-05 10:16:38,328] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M11_metrics [2023-12-05 10:16:38,329] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_hist.pdf [2023-12-05 10:16:38,347] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-12-05 10:16:38,349] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-12-05 10:16:38,349] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-12-05 10:16:38,355] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-12-05 10:16:38,381] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: process_output_extradetailed.R [2023-12-05 10:16:38,389] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: run.sh [2023-12-05 10:16:38,391] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: run.sh [2023-12-05 10:16:38,395] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: run.sh [2023-12-05 10:16:38,409] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_compact.R [2023-12-05 10:16:38,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_compact.R [2023-12-05 10:16:38,427] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: process_output_detailed.R [2023-12-05 10:16:38,429] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: process_output_detailed.R [2023-12-05 10:16:38,433] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: process_output_detailed.R [2023-12-05 10:16:38,461] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:16:38,464] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:16:38,466] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_alignments.bam.bai [2023-12-05 10:16:38,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_alignments.bam [2023-12-05 10:16:38,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_sorted_mapped.bam [2023-12-05 10:16:38,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_sorted_mapped.bam.bai [2023-12-05 10:16:38,501] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:16:38,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:16:38,503] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:16:38,507] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:16:38,507] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:16:38,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:16:38,508] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:16:38,508] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:16:38,508] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:16:38,508] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:16:38,508] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:16:38,519] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:16:39,165] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:16:39,200] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_filtered_StrgtPks.bam.bai [2023-12-05 10:16:39,207] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_filtered_StrgtPks_sorted.bam [2023-12-05 10:16:39,207] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_StrgtPks_tab.bed [2023-12-05 10:16:39,207] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_StrgtPksRm_tab.bed [2023-12-05 10:16:39,208] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_filtered_StrgtPks.bam [2023-12-05 10:16:39,208] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:16:39,210] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:16:39,216] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M12_read_MACS2_peaks.out1 [2023-12-05 10:16:39,219] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M12_read_MACS2_peaks.out1 [2023-12-05 10:16:39,219] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M12_read_MACS2_peaks.out1 [2023-12-05 10:16:39,223] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M12_read_MACS2_peaks.out1 [2023-12-05 10:16:39,223] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M12_read_MACS2_peaks.out1 [2023-12-05 10:16:39,224] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M12_read_MACS2_peaks.out1 [2023-12-05 10:16:39,224] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M12_read_MACS2_peaks.out1 [2023-12-05 10:16:39,224] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M12_read_MACS2_peaks.out1 [2023-12-05 10:16:39,224] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M12_read_MACS2_peaks.out1 [2023-12-05 10:16:39,224] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M12_read_MACS2_peaks.out1 [2023-12-05 10:16:39,224] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M12_read_MACS2_peaks.out1 [2023-12-05 10:16:39,274] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M12_read_MACS2_peaks.out1 [2023-12-05 10:16:39,872] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M12_read_MACS2_peaks.out1 [2023-12-05 10:16:39,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_narrow_MACS2_summits.bed [2023-12-05 10:16:39,938] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:39,942] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:39,942] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:39,948] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:39,948] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:39,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:39,948] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:39,948] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:39,948] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:39,948] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:39,948] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:39,949] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:39,949] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:41,658] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:41,766] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:41,769] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:41,769] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:41,773] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:41,773] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:41,773] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:41,773] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:41,773] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:41,773] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:41,773] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:41,779] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:41,822] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:41,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:41,827] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:41,832] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:41,833] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:41,833] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:41,833] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:41,833] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:41,833] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:41,833] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:41,833] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:41,845] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:42,455] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:42,499] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:42,501] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:42,501] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:42,505] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:42,506] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:42,512] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M12_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:42,543] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:16:42,582] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:42,586] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:42,586] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:42,593] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:42,593] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:42,593] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:42,594] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:42,594] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:42,594] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:42,594] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:42,594] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:42,594] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:42,594] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:44,120] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M12_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:44,209] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:16:44,217] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:16:44,224] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:16:44,242] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:16:44,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:16:44,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:16:44,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:16:44,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:16:44,275] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M12_metrics [2023-12-05 10:16:44,279] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M12_metrics [2023-12-05 10:16:44,279] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M12_metrics [2023-12-05 10:16:44,285] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M12_metrics [2023-12-05 10:16:44,301] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M12_metrics [2023-12-05 10:16:44,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_hist.pdf [2023-12-05 10:16:44,307] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:44,309] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:44,310] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:44,313] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:44,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:44,319] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:44,326] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M12_read_SICER.out1 [2023-12-05 10:16:44,328] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M12_read_SICER.out1 [2023-12-05 10:16:44,328] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M12_read_SICER.out1 [2023-12-05 10:16:44,332] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M12_read_SICER.out1 [2023-12-05 10:16:44,332] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M12_read_SICER.out1 [2023-12-05 10:16:44,332] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M12_read_SICER.out1 [2023-12-05 10:16:44,332] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M12_read_SICER.out1 [2023-12-05 10:16:44,332] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M12_read_SICER.out1 [2023-12-05 10:16:44,332] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M12_read_SICER.out1 [2023-12-05 10:16:44,333] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M12_read_SICER.out1 [2023-12-05 10:16:44,333] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M12_read_SICER.out1 [2023-12-05 10:16:44,394] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M12_read_SICER.out1 [2023-12-05 10:16:44,879] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M12_read_SICER.out1 [2023-12-05 10:16:44,928] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:16:44,934] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland [2023-12-05 10:16:44,936] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland [2023-12-05 10:16:44,936] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland [2023-12-05 10:16:44,940] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland [2023-12-05 10:16:44,940] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland [2023-12-05 10:16:44,940] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland [2023-12-05 10:16:44,940] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland [2023-12-05 10:16:44,940] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland [2023-12-05 10:16:44,940] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland [2023-12-05 10:16:44,940] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland [2023-12-05 10:16:45,398] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100.scoreisland [2023-12-05 10:16:45,423] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12-1-removed.bed [2023-12-05 10:16:45,460] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:16:45,464] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:16:45,464] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:16:45,470] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:16:45,470] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:16:45,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:16:45,470] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:16:45,471] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:16:45,471] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:16:45,471] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:16:45,471] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:16:45,471] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:16:45,471] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:16:56,040] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M12-W400-G2400-E100-islandfiltered-normalized.wig [2023-12-05 10:16:56,691] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:16:56,691] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:16:56,692] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:16:56,697] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:16:56,700] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:16:56,712] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:16:56,712] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:16:56,712] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:16:56,713] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:16:56,715] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:16:56,718] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:16:56,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_alignments.bam [2023-12-05 10:16:56,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_alignments.bam.bai [2023-12-05 10:16:56,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_sorted_mapped.bam.bai [2023-12-05 10:16:56,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_sorted_mapped.bam [2023-12-05 10:16:56,758] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M10_read_SICER.out1 [2023-12-05 10:16:56,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M10_read_SICER.out1 [2023-12-05 10:16:56,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M10_read_SICER.out1 [2023-12-05 10:16:56,766] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M10_read_SICER.out1 [2023-12-05 10:16:56,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M10_read_SICER.out1 [2023-12-05 10:16:56,766] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M10_read_SICER.out1 [2023-12-05 10:16:56,766] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M10_read_SICER.out1 [2023-12-05 10:16:56,766] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M10_read_SICER.out1 [2023-12-05 10:16:56,767] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M10_read_SICER.out1 [2023-12-05 10:16:56,767] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M10_read_SICER.out1 [2023-12-05 10:16:57,166] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M10_read_SICER.out1 [2023-12-05 10:16:57,206] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:16:57,216] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:57,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:57,218] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:57,223] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:57,223] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:57,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland.bb [2023-12-05 10:16:57,231] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:16:57,267] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland [2023-12-05 10:16:57,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland [2023-12-05 10:16:57,270] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland [2023-12-05 10:16:57,275] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland [2023-12-05 10:16:57,275] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland [2023-12-05 10:16:57,275] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland [2023-12-05 10:16:57,275] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland [2023-12-05 10:16:57,275] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland [2023-12-05 10:16:57,276] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland [2023-12-05 10:16:57,276] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland [2023-12-05 10:16:57,635] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M10-W400-G2400-E100.scoreisland [2023-12-05 10:16:57,661] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10-1-removed.bed [2023-12-05 10:16:57,662] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:16:57,667] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:16:57,669] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:16:57,682] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:16:57,682] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:16:57,682] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:16:57,682] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:16:57,683] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:16:57,688] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:16:57,690] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:16:57,690] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:16:57,695] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:16:57,695] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:16:57,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:16:57,695] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:16:57,695] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:16:57,695] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:16:57,695] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:16:57,695] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:16:57,707] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:16:58,326] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:16:58,452] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_filtered_StrgtPks.bam [2023-12-05 10:16:58,452] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_filtered_StrgtPks_sorted.bam [2023-12-05 10:16:58,452] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_StrgtPks_tab.bed [2023-12-05 10:16:58,452] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_StrgtPksRm_tab.bed [2023-12-05 10:16:58,452] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_filtered_StrgtPks.bam.bai [2023-12-05 10:16:58,452] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:16:58,480] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:58,483] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:58,484] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:58,490] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:58,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:58,554] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.gappedPeak [2023-12-05 10:16:58,577] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M10_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:58,581] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M10_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:58,581] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M10_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:58,588] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M10_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:58,602] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M10_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:16:58,607] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:16:58,627] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M10_read_MACS2_peaks.out1 [2023-12-05 10:16:58,630] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M10_read_MACS2_peaks.out1 [2023-12-05 10:16:58,630] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M10_read_MACS2_peaks.out1 [2023-12-05 10:16:58,635] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M10_read_MACS2_peaks.out1 [2023-12-05 10:16:58,665] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M10_read_MACS2_peaks.out1 [2023-12-05 10:16:58,688] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:58,690] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:58,691] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:58,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:58,702] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:16:58,704] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_narrow_MACS2_summits.bed [2023-12-05 10:16:58,753] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:58,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:58,756] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:58,762] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:58,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:58,809] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M10_broad_MACS2_peaks.broadPeak [2023-12-05 10:16:58,827] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M10_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:58,829] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M10_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:58,830] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M10_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:58,833] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M10_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:58,840] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M10_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:16:58,844] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:16:58,844] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:16:58,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:16:58,850] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:16:58,852] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:16:58,878] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:16:58,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:16:58,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:16:58,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:16:58,902] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M10_metrics [2023-12-05 10:16:58,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M10_metrics [2023-12-05 10:16:58,906] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M10_metrics [2023-12-05 10:16:58,912] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M10_metrics [2023-12-05 10:16:58,927] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M10_metrics [2023-12-05 10:16:58,928] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_hist.pdf [2023-12-05 10:16:59,032] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: index [2023-12-05 10:16:59,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: index [2023-12-05 10:16:59,036] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: index [2023-12-05 10:16:59,042] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: index [2023-12-05 10:16:59,054] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: index [2023-12-05 10:16:59,237] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-12-05 10:16:59,239] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-12-05 10:16:59,240] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-12-05 10:16:59,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-12-05 10:16:59,255] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fsmonitor-watchman.sample [2023-12-05 10:16:59,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-commit.sample [2023-12-05 10:16:59,270] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-commit.sample [2023-12-05 10:16:59,297] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: update.sample [2023-12-05 10:16:59,300] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: update.sample [2023-12-05 10:16:59,304] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: update.sample [2023-12-05 10:16:59,321] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: push-to-checkout.sample [2023-12-05 10:16:59,323] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: push-to-checkout.sample [2023-12-05 10:16:59,328] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: push-to-checkout.sample [2023-12-05 10:16:59,359] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-push.sample [2023-12-05 10:16:59,362] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-push.sample [2023-12-05 10:16:59,418] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pre-rebase.sample [2023-12-05 10:16:59,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pre-rebase.sample [2023-12-05 10:16:59,421] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pre-rebase.sample [2023-12-05 10:16:59,425] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pre-rebase.sample [2023-12-05 10:16:59,436] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pre-rebase.sample [2023-12-05 10:16:59,441] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: prepare-commit-msg.sample [2023-12-05 10:16:59,444] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: prepare-commit-msg.sample [2023-12-05 10:16:59,623] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:16:59,625] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:16:59,625] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:16:59,629] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:16:59,629] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:16:59,629] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:16:59,630] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:16:59,630] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:16:59,630] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:16:59,630] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:16:59,630] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:16:59,630] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:16:59,630] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:16:59,635] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.pack [2023-12-05 10:16:59,643] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.idx [2023-12-05 10:16:59,645] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.idx [2023-12-05 10:16:59,646] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.idx [2023-12-05 10:16:59,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.idx [2023-12-05 10:16:59,659] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: pack-951183ad0639b41ecae143f30d33be63558ae4ad.idx [2023-12-05 10:16:59,737] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: b5715371fa53bf71b62f69ac0691a85f552d55 [2023-12-05 10:16:59,739] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: b5715371fa53bf71b62f69ac0691a85f552d55 [2023-12-05 10:16:59,739] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: b5715371fa53bf71b62f69ac0691a85f552d55 [2023-12-05 10:16:59,743] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: b5715371fa53bf71b62f69ac0691a85f552d55 [2023-12-05 10:16:59,749] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: b5715371fa53bf71b62f69ac0691a85f552d55 [2023-12-05 10:16:59,788] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_CKDL230039433-1A_HHVHMDSX7_L3_R1.fastq.gz [2023-12-05 10:16:59,791] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_CKDL230039433-1A_HHVHMDSX7_L3_R2.fastq.gz [2023-12-05 10:16:59,791] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_alignments.bam [2023-12-05 10:16:59,791] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_sorted_mapped.bam [2023-12-05 10:16:59,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_alignments.bam.bai [2023-12-05 10:16:59,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_sorted_mapped.bam.bai [2023-12-05 10:16:59,816] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:16:59,819] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:16:59,819] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:16:59,830] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:16:59,830] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:16:59,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:16:59,830] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:16:59,830] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:16:59,830] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:16:59,830] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:16:59,830] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:16:59,842] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:00,464] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:00,498] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_StrgtPks_tab.bed [2023-12-05 10:17:00,498] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_StrgtPksRm_tab.bed [2023-12-05 10:17:00,499] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_filtered_StrgtPks_sorted.bam [2023-12-05 10:17:00,499] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_filtered_StrgtPks_sorted.bam.bai [2023-12-05 10:17:00,499] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_filtered_StrgtPks.bam [2023-12-05 10:17:00,499] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_filtered_StrgtPks.bam.bai [2023-12-05 10:17:00,514] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M09_read_MACS2_peaks.out1 [2023-12-05 10:17:00,516] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M09_read_MACS2_peaks.out1 [2023-12-05 10:17:00,516] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M09_read_MACS2_peaks.out1 [2023-12-05 10:17:00,521] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M09_read_MACS2_peaks.out1 [2023-12-05 10:17:00,534] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M09_read_MACS2_peaks.out1 [2023-12-05 10:17:00,562] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:17:00,564] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:17:00,564] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:17:00,576] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:17:00,582] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.broadPeak.bb [2023-12-05 10:17:00,588] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M09_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:17:00,590] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M09_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:17:00,591] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M09_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:17:00,595] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M09_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:17:00,601] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M09_narrow_MACS2_peaks.narrowPeak.bb [2023-12-05 10:17:00,620] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M09_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:17:00,622] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M09_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:17:00,623] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M09_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:17:00,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M09_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:17:00,641] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M09_narrow_MACS2_peaks.narrowPeak [2023-12-05 10:17:00,644] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:17:00,647] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_narrow_MACS2_summits.bed [2023-12-05 10:17:00,665] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.gappedPeak [2023-12-05 10:17:00,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.gappedPeak [2023-12-05 10:17:00,668] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.gappedPeak [2023-12-05 10:17:00,680] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.gappedPeak [2023-12-05 10:17:00,680] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.gappedPeak [2023-12-05 10:17:00,729] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.gappedPeak [2023-12-05 10:17:00,754] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.broadPeak [2023-12-05 10:17:00,759] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.broadPeak [2023-12-05 10:17:00,760] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.broadPeak [2023-12-05 10:17:00,765] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.broadPeak [2023-12-05 10:17:00,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.broadPeak [2023-12-05 10:17:00,816] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M09_broad_MACS2_peaks.broadPeak [2023-12-05 10:17:00,825] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_broad_MACS2_peaks.broadPeak.bed [2023-12-05 10:17:00,825] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:17:00,830] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:17:00,833] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:17:00,846] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_merged_common.bed [2023-12-05 10:17:00,846] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_narrow_MACS2_peaks.narrowPeak_mm9-blacklist_Union.bed [2023-12-05 10:17:00,846] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_narrow_MACS2_peaks.narrowPeak_unique.bed [2023-12-05 10:17:00,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_narrow_MACS2_peaks.narrowPeak_common.bed [2023-12-05 10:17:00,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:17:00,848] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09-1-removed.bed [2023-12-05 10:17:00,897] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland.bb [2023-12-05 10:17:00,900] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland.bb [2023-12-05 10:17:00,900] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland.bb [2023-12-05 10:17:00,905] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland.bb [2023-12-05 10:17:00,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland.bb [2023-12-05 10:17:00,911] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland.bb [2023-12-05 10:17:00,951] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M09_read_SICER.out1 [2023-12-05 10:17:00,954] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M09_read_SICER.out1 [2023-12-05 10:17:00,955] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M09_read_SICER.out1 [2023-12-05 10:17:00,960] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M09_read_SICER.out1 [2023-12-05 10:17:00,961] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M09_read_SICER.out1 [2023-12-05 10:17:00,961] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M09_read_SICER.out1 [2023-12-05 10:17:00,961] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M09_read_SICER.out1 [2023-12-05 10:17:00,961] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M09_read_SICER.out1 [2023-12-05 10:17:00,961] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M09_read_SICER.out1 [2023-12-05 10:17:00,961] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M09_read_SICER.out1 [2023-12-05 10:17:01,387] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M09_read_SICER.out1 [2023-12-05 10:17:01,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland [2023-12-05 10:17:01,416] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland [2023-12-05 10:17:01,417] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland [2023-12-05 10:17:01,421] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland [2023-12-05 10:17:01,421] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland [2023-12-05 10:17:01,421] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland [2023-12-05 10:17:01,421] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland [2023-12-05 10:17:01,421] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland [2023-12-05 10:17:01,421] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland [2023-12-05 10:17:01,421] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland [2023-12-05 10:17:01,806] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M09-W400-G2400-E100.scoreisland [2023-12-05 10:17:01,827] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Omitted_Peaks.bed [2023-12-05 10:17:01,828] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09-W400-G2400-E100-islandfiltered.bed [2023-12-05 10:17:01,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_common.bed [2023-12-05 10:17:01,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09-W400-G2400-E100.scoreisland_unique.bed [2023-12-05 10:17:01,834] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:17:01,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Overlap_Summary.txt [2023-12-05 10:17:01,856] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: mm9-blacklist_unique.bed [2023-12-05 10:17:01,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09-W400-G2400-E100.scoreisland_common.bed [2023-12-05 10:17:01,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09-W400-G2400-E100.scoreisland_mm9-blacklist_merged_common.bed [2023-12-05 10:17:01,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09-W400-G2400-E100.scoreisland_mm9-blacklist_Union.bed [2023-12-05 10:17:01,879] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M09_metrics [2023-12-05 10:17:01,881] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M09_metrics [2023-12-05 10:17:01,882] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M09_metrics [2023-12-05 10:17:01,887] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M09_metrics [2023-12-05 10:17:01,910] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M09_metrics [2023-12-05 10:17:01,912] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_hist.pdf [2023-12-05 10:17:01,919] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:01,921] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:01,921] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:01,926] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:01,937] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:01,944] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:17:01,947] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:17:01,947] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:17:01,951] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:17:01,967] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:17:01,974] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:01,977] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:02,003] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:17:02,007] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:17:02,007] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:17:02,013] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:17:02,030] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:17:02,039] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:17:02,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:17:02,041] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:17:02,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:17:02,077] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:17:02,106] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:02,109] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:02,113] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:02,129] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_FASTQC.sh [2023-12-05 10:17:02,132] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_FASTQC.sh [2023-12-05 10:17:02,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_FASTQC.sh [2023-12-05 10:17:02,155] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G218_H3K27me3_SICER_G218M11.o2798410 [2023-12-05 10:17:02,158] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G218_H3K27me3_SICER_G218M11.o2798410 [2023-12-05 10:17:02,158] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G218_H3K27me3_SICER_G218M11.o2798410 [2023-12-05 10:17:02,162] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G218_H3K27me3_SICER_G218M11.o2798410 [2023-12-05 10:17:02,189] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G218_H3K27me3_SICER_G218M11.o2798410 [2023-12-05 10:17:02,215] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G218_H3K27me3_SICER_G218M10.o2798409 [2023-12-05 10:17:02,219] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G218_H3K27me3_SICER_G218M10.o2798409 [2023-12-05 10:17:02,220] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G218_H3K27me3_SICER_G218M10.o2798409 [2023-12-05 10:17:02,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G218_H3K27me3_SICER_G218M10.o2798409 [2023-12-05 10:17:02,240] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_02_G218_H3K27me3_SICER_G218M10.o2798409 [2023-12-05 10:17:02,270] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:02,273] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:02,285] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:02,316] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:02,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:02,319] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:02,323] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:02,335] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:02,361] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2023-12-05 10:17:02,365] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2023-12-05 10:17:02,366] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2023-12-05 10:17:02,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2023-12-05 10:17:02,395] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2023-12-05 10:17:02,416] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_02_G218_H3K27me3_SICER_G218M09.o2798408 [2023-12-05 10:17:02,419] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_02_G218_H3K27me3_SICER_G218M09.o2798408 [2023-12-05 10:17:02,419] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_02_G218_H3K27me3_SICER_G218M09.o2798408 [2023-12-05 10:17:02,424] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_02_G218_H3K27me3_SICER_G218M09.o2798408 [2023-12-05 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[2023-12-05 10:17:03,661] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_04_G218_H3K27me3_SICER_G218M12.o2798927 [2023-12-05 10:17:03,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_04_G218_H3K27me3_SICER_G218M12.o2798927 [2023-12-05 10:17:03,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_04_G218_H3K27me3_SICER_G218M12.o2798927 [2023-12-05 10:17:03,689] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_04_G218_H3K27me3_SICER_G218M09.o2798924 [2023-12-05 10:17:03,691] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_04_G218_H3K27me3_SICER_G218M09.o2798924 [2023-12-05 10:17:03,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:05,802] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:05,811] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2023-12-05 10:17:05,814] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2023-12-05 10:17:05,818] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Peak_Union_Count.sh [2023-12-05 10:17:05,840] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G218_H3K27me3_SICER_G218M09.o2807639 [2023-12-05 10:17:05,842] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G218_H3K27me3_SICER_G218M09.o2807639 [2023-12-05 10:17:05,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G218_H3K27me3_SICER_G218M09.o2807639 [2023-12-05 10:17:05,860] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G218_H3K27me3_SICER_G218M11.o2807641 [2023-12-05 10:17:05,863] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G218_H3K27me3_SICER_G218M11.o2807641 [2023-12-05 10:17:05,867] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G218_H3K27me3_SICER_G218M11.o2807641 [2023-12-05 10:17:05,900] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-12-05 10:17:05,902] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-12-05 10:17:05,902] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-12-05 10:17:05,906] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-12-05 10:17:05,919] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Peak_Union_Count.qsub [2023-12-05 10:17:05,924] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:05,927] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:05,931] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:05,951] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:05,954] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:05,958] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:05,972] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G218_H3K27me3_SICER_G218M10.o2807640 [2023-12-05 10:17:05,974] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G218_H3K27me3_SICER_G218M10.o2807640 [2023-12-05 10:17:05,980] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G218_H3K27me3_SICER_G218M10.o2807640 [2023-12-05 10:17:05,995] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_09_G218_H3K27me3_SICER_G218M12.o2807642 [2023-12-05 10:17:05,998] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_09_G218_H3K27me3_SICER_G218M12.o2807642 [2023-12-05 10:17:06,002] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_09_G218_H3K27me3_SICER_G218M12.o2807642 [2023-12-05 10:17:06,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-12-05 10:17:06,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-12-05 10:17:06,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-12-05 10:17:06,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-12-05 10:17:06,106] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Peak_Union_Count_Stats.Rmd [2023-12-05 10:17:06,170] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:17:06,174] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:17:06,175] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:17:06,181] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:17:06,181] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:17:06,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:17:06,181] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:17:06,181] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:17:06,181] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:17:06,181] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:17:06,182] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:17:06,195] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:17:06,818] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M10_read_Peak_Union.out1 [2023-12-05 10:17:06,878] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:06,882] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:06,883] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:06,889] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:06,890] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:06,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:06,890] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:06,890] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:06,890] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:06,890] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:06,890] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:06,904] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:07,535] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M09_read_Peak_Union.out1 [2023-12-05 10:17:07,638] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:17:07,642] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:17:07,642] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:17:07,648] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:17:07,648] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:17:07,648] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:17:07,648] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:17:07,648] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:17:07,648] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:17:07,648] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:17:07,648] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:17:07,661] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:17:08,294] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M11_read_Peak_Union.out1 [2023-12-05 10:17:08,367] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:17:08,439] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:17:08,440] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:17:08,455] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:17:08,455] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:17:08,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:17:08,455] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:17:08,455] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:17:08,455] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:17:08,455] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:17:08,455] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:17:08,469] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:17:09,088] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218M12_read_Peak_Union.out1 [2023-12-05 10:17:09,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-12-05 10:17:09,127] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:09,129] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:09,130] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:09,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:09,154] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:09,183] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M09.o2806710 [2023-12-05 10:17:09,188] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M09.o2806710 [2023-12-05 10:17:09,188] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M09.o2806710 [2023-12-05 10:17:09,202] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M09.o2806710 [2023-12-05 10:17:09,213] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M09.o2806710 [2023-12-05 10:17:09,228] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M12.o2806713 [2023-12-05 10:17:09,230] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M12.o2806713 [2023-12-05 10:17:09,230] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M12.o2806713 [2023-12-05 10:17:09,236] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M12.o2806713 [2023-12-05 10:17:09,245] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M12.o2806713 [2023-12-05 10:17:09,273] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:09,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:09,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:09,294] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-12-05 10:17:09,304] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-12-05 10:17:09,309] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_CollectInsertSizeMetrics.sh [2023-12-05 10:17:09,322] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-12-05 10:17:09,325] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-12-05 10:17:09,325] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-12-05 10:17:09,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-12-05 10:17:09,342] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectInsertSizeMetrics.qsub [2023-12-05 10:17:09,351] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:09,355] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:09,356] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:09,362] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:09,373] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:09,389] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M10.o2806711 [2023-12-05 10:17:09,392] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M10.o2806711 [2023-12-05 10:17:09,393] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M10.o2806711 [2023-12-05 10:17:09,399] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M10.o2806711 [2023-12-05 10:17:09,415] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M10.o2806711 [2023-12-05 10:17:09,430] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M11.o2806712 [2023-12-05 10:17:09,432] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M11.o2806712 [2023-12-05 10:17:09,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M11.o2806712 [2023-12-05 10:17:09,437] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M11.o2806712 [2023-12-05 10:17:09,446] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_07_G218_H3K27me3_SICER_G218M11.o2806712 [2023-12-05 10:17:09,467] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2023-12-05 10:17:09,472] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:09,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:09,475] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:09,479] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:09,488] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:09,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G218_H3K27me3_SICER_G218M11.o2804827 [2023-12-05 10:17:09,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G218_H3K27me3_SICER_G218M11.o2804827 [2023-12-05 10:17:09,609] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G218_H3K27me3_SICER_G218M11.o2804827 [2023-12-05 10:17:09,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G218_H3K27me3_SICER_G218M11.o2804827 [2023-12-05 10:17:09,632] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G218_H3K27me3_SICER_G218M11.o2804827 [2023-12-05 10:17:09,638] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-12-05 10:17:09,640] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-12-05 10:17:09,641] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-12-05 10:17:09,645] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-12-05 10:17:09,658] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: RmStraightPk.qsub [2023-12-05 10:17:09,700] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06a_G218_H3K27me3_SICER_G218M10.o2804825 [2023-12-05 10:17:09,703] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06a_G218_H3K27me3_SICER_G218M10.o2804825 [2023-12-05 10:17:09,703] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06a_G218_H3K27me3_SICER_G218M10.o2804825 [2023-12-05 10:17:09,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06a_G218_H3K27me3_SICER_G218M10.o2804825 [2023-12-05 10:17:09,719] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06a_G218_H3K27me3_SICER_G218M10.o2804825 [2023-12-05 10:17:09,725] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:09,734] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:09,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:09,754] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:09,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:09,756] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:09,761] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Run_Jobs.sh 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[2023-12-05 10:17:10,660] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08c_G218_H3K27me3_SICER_G218M09.o2807100 [2023-12-05 10:17:10,677] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08c_G218_H3K27me3_SICER_G218M09.o2807100 [2023-12-05 10:17:10,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_macs2.sh [2023-12-05 10:17:10,688] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_macs2.sh [2023-12-05 10:17:10,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_macs2.sh [2023-12-05 10:17:10,737] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:10,739] multiqc [DEBUG ] File ignored by lima/summary because it exceeded 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Generate_Tracks.sh [2023-12-05 10:17:12,778] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-12-05 10:17:12,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-12-05 10:17:12,780] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-12-05 10:17:12,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-12-05 10:17:12,798] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_Generate_Tracks.sh [2023-12-05 10:17:12,823] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:12,825] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:12,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:12,838] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: chrom_state_legend.pdf [2023-12-05 10:17:12,872] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_Wiggle_autoON.txt [2023-12-05 10:17:12,875] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_Wiggle_autoON.txt [2023-12-05 10:17:12,875] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_Wiggle_autoON.txt [2023-12-05 10:17:12,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_Wiggle_autoON.txt [2023-12-05 10:17:12,887] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_Wiggle_autoON.txt [2023-12-05 10:17:12,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_Wiggle.txt [2023-12-05 10:17:12,900] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_Wiggle.txt [2023-12-05 10:17:12,901] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_Wiggle.txt [2023-12-05 10:17:12,908] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_Wiggle.txt [2023-12-05 10:17:12,917] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_Wiggle.txt [2023-12-05 10:17:12,926] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_PileUp.txt [2023-12-05 10:17:12,928] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_PileUp.txt [2023-12-05 10:17:12,929] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_PileUp.txt [2023-12-05 10:17:12,933] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_PileUp.txt [2023-12-05 10:17:12,940] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G218_H3K27me3_SICER_Tracks_PileUp.txt [2023-12-05 10:17:12,946] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:12,948] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:12,948] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:12,960] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:12,976] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:13,021] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M09.o2806796 [2023-12-05 10:17:13,025] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M09.o2806796 [2023-12-05 10:17:13,026] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M09.o2806796 [2023-12-05 10:17:13,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M09.o2806796 [2023-12-05 10:17:13,056] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M09.o2806796 [2023-12-05 10:17:13,069] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: macs2.qsub [2023-12-05 10:17:13,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: macs2.qsub [2023-12-05 10:17:13,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: macs2.qsub [2023-12-05 10:17:13,080] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: macs2.qsub [2023-12-05 10:17:13,103] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: macs2.qsub [2023-12-05 10:17:13,127] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M11.o2806798 [2023-12-05 10:17:13,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M11.o2806798 [2023-12-05 10:17:13,131] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M11.o2806798 [2023-12-05 10:17:13,138] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M11.o2806798 [2023-12-05 10:17:13,162] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M11.o2806798 [2023-12-05 10:17:13,175] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_macs2.sh [2023-12-05 10:17:13,178] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_macs2.sh [2023-12-05 10:17:13,182] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_macs2.sh [2023-12-05 10:17:13,212] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M12.o2806799 [2023-12-05 10:17:13,217] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M12.o2806799 [2023-12-05 10:17:13,218] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M12.o2806799 [2023-12-05 10:17:13,224] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M12.o2806799 [2023-12-05 10:17:13,239] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M12.o2806799 [2023-12-05 10:17:13,264] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:13,266] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:13,270] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-05 10:17:13,292] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:13,294] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:13,325] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M10.o2806797 [2023-12-05 10:17:13,328] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M10.o2806797 [2023-12-05 10:17:13,328] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M10.o2806797 [2023-12-05 10:17:13,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M10.o2806797 [2023-12-05 10:17:13,348] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_08a_G218_H3K27me3_SICER_G218M10.o2806797 [2023-12-05 10:17:13,372] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: overlap.R [2023-12-05 10:17:13,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: overlap.R [2023-12-05 10:17:13,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: overlap.R [2023-12-05 10:17:13,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: overlap.R [2023-12-05 10:17:13,486] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: overlap.R [2023-12-05 10:17:13,513] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: overlap.sh [2023-12-05 10:17:13,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: overlap.sh [2023-12-05 10:17:13,516] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: overlap.sh [2023-12-05 10:17:13,521] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: overlap.sh [2023-12-05 10:17:13,532] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: overlap.sh [2023-12-05 10:17:13,538] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-12-05 10:17:13,540] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-12-05 10:17:13,545] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Peak_Width_Stats.R [2023-12-05 10:17:13,579] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Peak_Counts.sh [2023-12-05 10:17:13,581] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Peak_Counts.sh [2023-12-05 10:17:13,614] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-12-05 10:17:13,617] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-12-05 10:17:13,617] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-12-05 10:17:13,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-12-05 10:17:13,635] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Chr_Peak_Counts.R [2023-12-05 10:17:13,662] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-12-05 10:17:13,665] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-12-05 10:17:13,669] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: BED_to_WIG.sh [2023-12-05 10:17:13,725] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:17:13,728] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:17:13,728] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:17:13,733] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:17:13,733] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:17:13,733] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:17:13,733] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:17:13,733] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:17:13,734] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:17:13,734] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:17:13,734] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:17:13,734] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:17:13,739] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bedToBigBed [2023-12-05 10:17:13,746] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-12-05 10:17:13,748] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-12-05 10:17:13,753] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Remove_Outbound_Peaks.pl [2023-12-05 10:17:13,854] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:17:13,854] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:17:13,854] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:17:13,855] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Chr_Peak_Counts.pdf [2023-12-05 10:17:13,855] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:17:13,856] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M12_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:17:13,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M11_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:17:13,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M09_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:17:13,858] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G218M10_narrow_MACS2_peaks.narrowPeak.bed [2023-12-05 10:17:13,858] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Peak_Union.bed [2023-12-05 10:17:13,887] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:13,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:13,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:13,898] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:13,910] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-05 10:17:13,929] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:17:13,931] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:17:13,931] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:17:13,938] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:17:13,952] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: README_diffReps.sh [2023-12-05 10:17:13,959] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:13,961] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-05 10:17:13,995] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:17:13,998] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:17:13,998] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:17:14,003] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:17:14,019] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffReps.qsub [2023-12-05 10:17:14,042] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:17:14,044] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:17:14,045] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:17:14,050] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:17:14,076] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: diffreps_genomicRanges.R [2023-12-05 10:17:14,412] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.1.2 [2023-12-05 10:17:14,824] multiqc.modules.macs2.macs2 [INFO ] Found 8 logs [2023-12-05 10:17:14,839] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.1.2 [2023-12-05 10:17:14,874] multiqc.modules.picard.picard [INFO ] Found 4 InsertSizeMetrics reports [2023-12-05 10:17:14,887] multiqc.modules.samtools.samtools [INFO ] Found 4 flagstat reports [2023-12-05 10:17:14,889] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M09_idxstats [2023-12-05 10:17:14,890] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M10_idxstats [2023-12-05 10:17:14,891] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M12_idxstats [2023-12-05 10:17:14,891] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M11_idxstats [2023-12-05 10:17:14,892] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M09_idxstats [2023-12-05 10:17:14,892] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M10_idxstats [2023-12-05 10:17:14,893] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M12_idxstats [2023-12-05 10:17:14,894] multiqc.modules.samtools.idxstats [DEBUG ] Duplicate sample name found! Overwriting: G218M11_idxstats [2023-12-05 10:17:14,900] multiqc.modules.samtools.samtools [INFO ] Found 4 idxstats reports [2023-12-05 10:17:14,908] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M12_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:17:14,911] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M09_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:17:14,913] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M10_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:17:14,915] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Found a bowtie2 command, updating sample name to 'G218M11_CKDL230039433-1A_HHVHMDSX7_L3_R1' [2023-12-05 10:17:14,915] multiqc.modules.bowtie2.bowtie2 [INFO ] Found 5 reports [2023-12-05 10:17:16,391] multiqc.modules.fastqc.fastqc [INFO ] Found 8 reports [2023-12-05 10:17:16,696] multiqc [INFO ] Compressing plot data [2023-12-05 10:17:17,005] multiqc [INFO ] Report : Job_Summary/G218_H3K27me3_SICER_MULTIQC/multiqc_report.html [2023-12-05 10:17:17,006] multiqc [INFO ] Data : Job_Summary/G218_H3K27me3_SICER_MULTIQC/multiqc_data [2023-12-05 10:17:17,006] multiqc [DEBUG ] Moving data file from '/scratch/tmpvuobhmnn/multiqc_data' to 'Job_Summary/G218_H3K27me3_SICER_MULTIQC/multiqc_data' [2023-12-05 10:17:17,124] multiqc [INFO ] MultiQC complete