#lnc	lncGeneSymbol	ortholog	orthologGeneSymbol	alignScore	exonID	locusID	indelRate(exon)	indelRate(intron)	lncExonsAligned	orthExonsAligned	spliceConserved	spliceTotal	category(mm9)	category(hg19)
TCONS_00242841	Gm6938	uc004eqg.1	LOC642776	22847	0.00	0.57	NA	0.083	NA	NA	0.0	2	intergenic	intergenic
TCONS_00239782	AK005539	uc022cep.1	BC029787	17959	0.41	0.55	0.032	0.085	3,	4,	0.5	2	intergenic	divergent
TCONS_00243371	Unannotated	uc004exf.3	MIR92A2	607796	0.72	0.74	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00243370	Unannotated	uc022ceb.1	MIR363	607796	0.87	0.88	0.000	0.000	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00243373	Unannotated	uc022ced.1	MIR20B	614107	0.72	0.74	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00243372	Unannotated	uc011mvi.1	MIR19B2	612499	0.89	0.91	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00243375	Kis2	uc004exg.1	MIR106A	617315	0.89	0.91	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00243374	Unannotated	uc022cee.1	MIR18B	617315	0.81	0.82	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00243376	Kis2	uc004exg.1	MIR106A	36480	0.03	0.03	0.107	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00244640	Xist	uc004ebm.2	XIST	148856	0.48	0.59	0.070	0.080	1,8,	1,5,	0.5	5	intergenic	intergenic
TCONS_00240528	F630028O10Rik	uc011mox.1	mir-223	242928	0.30	0.47	0.034	0.053	1,4,	1,2,	1.0	1	mir_host_exon	mir_host_exon
TCONS_00244449	Unannotated	uc011mpt.1	BCYRN1	305597	0.00	0.64	NA	0.000	NA	NA	0.0	2	intergenic	sno_host
TCONS_00240524	F630028O10Rik	uc004dwg.1	mir-223	242928	0.20	0.47	0.035	0.024	1,2,	1,2,3,	0.5	1	mir_host_exon	mir_host_exon
TCONS_00241508	AK042998	uc004eph.3	LINC00890	296134	0.68	0.53	0.031	0.067	3,	3,	0.5	2	intergenic	intergenic
TCONS_00242781	Unannotated	uc004dgk.1	AK098783	307842	0.00	0.02	0.000	0.059	1,	1,	0.5	1	intergenic	intergenic
TCONS_00242519	Unannotated	uc011mob.1	SSX8	16741	0.00	0.13	NA	0.082	NA	NA	0.0	4	intergenic	intergenic
TCONS_00244819	5330434G04Rik	uc010nlv.1	AK311342	111200	0.06	0.16	0.014	0.083	1,	1,	0.5	3	mir_host_intron	mir_host_intron
TCONS_00242786	Unannotated	uc004dgk.1	AK098783	310901	0.71	0.72	0.025	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00242784	Unannotated	uc004dgk.1	AK098783	328083	0.01	0.12	0.028	0.059	2,	1,	0.5	1	intergenic	intergenic
TCONS_00244561	Unannotated	uc011mpt.1	BCYRN1	163718	0.00	0.68	NA	0.047	NA	NA	0.0	1	intergenic	sno_host
TCONS_00244818	Unannotated	uc010nlw.1	MIR384	54091	0.92	0.93	0.000	0.000	1,	1,	0.0	0	mir_host_exon	intergenic
TCONS_00241302	Unannotated	uc004ejq.2	LINC00630	41762	0.00	0.53	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00241303	Unannotated	uc004ejr.3	LINC00630	71127	0.00	0.00	NA	NA	NA	NA	0.0	0	intergenic	intergenic
TCONS_00241314	Unannotated	uc004ejq.2	LINC00630	60867	0.00	0.60	NA	0.078	NA	NA	0.0	6	intergenic	intergenic
TCONS_00241306	Unannotated	uc004ejq.2	LINC00630	28662	0.00	0.54	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00241307	Unannotated	h1.ips_gene.v2.1_2154.0_chrX	LINC00630	50712	0.15	0.39	0.035	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00241304	Unannotated	uc004ejq.2	LINC00630	34622	0.00	0.57	NA	0.075	NA	NA	0.0	2	intergenic	intergenic
TCONS_00244447	Unannotated	uc011mpt.1	BCYRN1	60411	0.00	0.64	NA	1.000	NA	NA	0.0	0	intergenic	sno_host
TCONS_00241308	Unannotated	uc004ejq.2	LINC00630	27427	0.11	0.58	0.042	0.000	1,	6,	0.0	0	intergenic	intergenic
TCONS_00243567	Unannotated	uc022cfp.1	MIR888	65429	0.63	0.65	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00240852	Unannotated	uc010nlq.1	FTX	24508	0.00	0.55	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00240525	F630028O10Rik	uc004dwg.1	mir-223	242928	0.27	0.67	0.031	0.036	1,3,	1,2,3,	0.5	2	mir_host_exon	mir_host_exon
TCONS_00243587	Unannotated	uc022cfu.1	MIR506	35417	0.67	0.68	0.015	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00240527	F630028O10Rik	uc011mox.1	mir-223	242928	0.30	0.47	0.034	0.053	1,4,	1,2,	1.0	1	mir_host_exon	mir_host_exon
TCONS_00240526	F630028O10Rik	uc011mox.1	mir-223	242928	0.31	0.47	0.034	0.054	1,3,	1,2,	1.0	1	mir_host_exon	mir_host_exon
TCONS_00240837	2010000I03Rik	uc010nlq.1	FTX	24508	0.00	0.14	NA	0.077	NA	NA	0.0	4	intergenic	mir_host_intron
TCONS_00240788	Unannotated	uc011mpt.1	BCYRN1	64461	0.00	0.70	NA	0.000	NA	NA	0.0	0	intergenic	sno_host
TCONS_00241311	Unannotated	uc004ejq.2	LINC00630	23229	0.00	0.57	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00242764	Unannotated	uc011mlf.1	MIR222	336136	0.95	0.96	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00242767	AK170409	uc004dgk.1	AK098783	328083	0.01	0.02	0.028	0.059	2,	1,	0.5	1	intergenic	intergenic
TCONS_00242761	AK170409	uc011mlf.1	MIR222	336136	0.00	0.00	NA	0.000	NA	NA	0.0	0	mir_host_intron	mir_host_exon
TCONS_00242760	AK170409	uc011mle.1	MIR221	335940	0.05	0.01	0.009	NA	3,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00242763	Unannotated	uc011mle.1	MIR221	335940	0.98	0.98	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00242762	AK170409	uc011mlf.1	MIR222	336136	0.00	0.00	NA	0.000	NA	NA	0.0	0	mir_host_intron	mir_host_exon
TCONS_00243577	Unannotated	uc022cfo.1	MIR890	37035	0.69	0.69	0.000	0.000	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00240862	Unannotated	uc022bzd.1	MIR374C	79110	0.96	0.98	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00244639	Xist	uc004ebm.2	XIST	217802	0.40	0.62	0.063	0.082	1,4,7,	1,2,4,6,	0.5	5	intergenic	intergenic
TCONS_00244638	Xist	uc004ebm.2	XIST	217802	0.40	0.61	0.063	0.081	1,2,5,9,	1,2,4,6,	0.5	5	intergenic	intergenic
TCONS_00244689	B230206F22Rik	uc004ebr.1	FTX	56462	0.07	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244635	Xist	uc004ebm.2	XIST	217802	0.55	0.61	0.052	0.083	1,5,9,	1,4,6,	0.5	5	intergenic	intergenic
TCONS_00244634	Xist	uc004ebm.2	XIST	148856	0.52	0.59	0.070	0.080	1,8,	1,5,	0.5	5	intergenic	intergenic
TCONS_00244637	Xist	uc004ebm.2	XIST	217802	0.54	0.61	0.053	0.083	1,5,9,	1,4,6,	0.5	5	intergenic	intergenic
TCONS_00242205	Unannotated	uc022btb.1	TLR8-AS1	24846	0.00	0.56	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00244633	Xist	uc004ebm.2	XIST	217802	0.35	0.61	0.051	0.083	1,5,8,9,	1,4,6,	1.0	5	intergenic	intergenic
TCONS_00240529	F630028O10Rik	uc011mox.1	mir-223	242928	0.30	0.47	0.034	0.053	1,4,	1,2,	1.0	1	mir_host_exon	mir_host_exon
TCONS_00242520	Unannotated	uc011mob.1	SSX8	16741	0.00	0.10	NA	0.082	NA	NA	0.0	5	divergent	intergenic
TCONS_00242526	Unannotated	uc011mob.1	SSX8	16539	0.09	0.11	0.087	0.079	6,	8,	0.0	5	intergenic	intergenic
TCONS_00242525	Unannotated	uc011mob.1	SSX8	16539	0.10	0.11	0.087	0.079	6,	8,	0.0	5	divergent	intergenic
TCONS_00244680	B230206F22Rik	uc004ebr.1	FTX	56462	0.07	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244681	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244682	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244683	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244684	B230206F22Rik	uc004ebr.1	FTX	56462	0.07	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244685	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244686	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244687	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244688	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00242759	AK170409	uc011mlf.1	MIR222	336136	0.00	0.01	NA	0.000	NA	NA	0.0	0	mir_host_intron	mir_host_exon
TCONS_00243588	Unannotated	uc022cfv.1	MIR507	35417	0.67	0.68	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00239770	Etd	uc022cep.1	BC029787	17816	0.00	0.47	NA	0.078	NA	NA	0.0	1	intergenic	divergent
TCONS_00243380	Unannotated	uc022cef.1	MIR450B	512824	0.84	0.85	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00243383	Unannotated	uc022ceh.1	MIR542	520964	0.95	0.96	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00241315	Unannotated	uc004ejq.2	LINC00630	76451	0.00	0.56	NA	0.073	NA	NA	0.0	6	intergenic	intergenic
TCONS_00244691	Unannotated	uc022bzc.1	MIR374B	79110	0.69	0.70	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00244690	Unannotated	uc022bzb.1	MIR421	79110	0.99	1.00	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00240411	Unannotated	uc021vsx.1	MIR548N	39764	0.00	0.55	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00245854	Unannotated	uc002ekc.3	MIR138-2	206394	0.99	1.00	0.000	NA	1,	1,	0.0	0	intergenic	mir_host_exon
TCONS_00241316	Unannotated	uc004ejq.2	LINC00630	60867	0.00	0.61	NA	0.079	NA	NA	0.0	5	intergenic	intergenic
TCONS_00242228	Unannotated	uc004cui.1	AY660578	195390	0.00	0.67	NA	0.000	NA	NA	0.0	0	intergenic	divergent
TCONS_00242229	Unannotated	uc004cui.1	AY660578	52322	0.00	0.60	NA	0.000	NA	NA	0.0	0	intergenic	divergent
TCONS_00244448	Unannotated	uc011mpt.1	BCYRN1	305597	0.00	0.64	NA	0.000	NA	NA	0.0	2	intergenic	sno_host
TCONS_00242227	Unannotated	uc004cui.1	AY660578	104954	0.02	0.57	0.102	1.000	1,	2,	0.0	0	intergenic	divergent
TCONS_00245212	AK133643	uc021wfc.1	MIR5095	23061	0.00	0.07	NA	0.081	NA	NA	0.0	1	intergenic	intergenic
TCONS_00243391	Unannotated	uc011mvo.1	MIR424	531763	0.74	0.74	0.024	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00243390	Unannotated	uc011mvn.2	MIR503	531763	0.87	0.89	0.000	0.000	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00244861	Unannotated	uc004edk.1	CR627394	47869	0.00	0.61	NA	1.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00244862	Unannotated	uc004edk.1	CR627394	163260	0.00	0.69	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00240816	AK006087	uc022byz.1	LINC00684	387946	0.67	0.67	0.033	0.063	1,2,3,	1,2,3,	1.5	2	intergenic	intergenic
TCONS_00244662	Unannotated	uc022bzc.1	MIR374B	79110	0.00	0.01	NA	0.000	NA	NA	0.0	0	mir_host_intron	mir_host_exon
TCONS_00244663	B230206F22Rik	uc010nlq.1	FTX	64033	0.01	0.48	0.013	0.081	3,	5,	1.0	3	mir_host_intron	mir_host_intron
TCONS_00244661	B230206F22Rik	uc004ebr.1	FTX	56462	0.07	0.09	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244666	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.11	0.086	0.074	3,4,5,6,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244667	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.11	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244664	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.11	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244665	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.11	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244668	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.11	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244669	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.11	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00241294	Unannotated	uc004ejq.2	LINC00630	43963	0.00	0.55	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00241296	Unannotated	uc004ejq.2	LINC00630	49909	0.00	0.58	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00241292	Unannotated	uc004ejq.2	LINC00630	23651	0.00	0.42	NA	NA	NA	NA	0.0	0	intergenic	intergenic
TCONS_00239859	AK041463	uc022cex.1	LINC00892	40955	0.30	0.41	0.044	0.066	2,	3,	0.0	1	intergenic	intergenic
TCONS_00242127	Unannotated	uc004cxf.1	INE2	74764	0.20	0.05	0.081	NA	3,	1,	0.0	0	divergent	intergenic
TCONS_00240637	Unannotated	uc022byo.1	5S_rRNA	49062	0.02	0.02	0.079	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00240825	Tsix	uc004ebn.2	TSIX	25934	0.05	0.06	0.098	0.000	2,3,	1,	0.0	0	intergenic	intergenic
TCONS_00244636	Xist	uc004ebm.2	XIST	217802	0.40	0.61	0.063	0.081	1,2,5,9,	1,2,4,6,	0.5	5	intergenic	intergenic
TCONS_00240530	F630028O10Rik	uc004dwg.1	mir-223	242928	0.19	0.46	0.036	0.030	2,	2,3,	0.0	1	mir_host_exon	mir_host_exon
TCONS_00240531	F630028O10Rik	uc022byg.1	mir-223	242312	0.90	0.90	0.000	0.000	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00241305	Unannotated	uc004ejq.2	LINC00630	34622	0.00	0.57	NA	0.075	NA	NA	0.0	2	intergenic	intergenic
TCONS_00244671	B230206F22Rik	uc004ebr.1	FTX	56462	0.07	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244670	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244673	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244672	B230206F22Rik	uc004ebr.1	FTX	56462	0.07	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244675	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.10	0.086	0.074	3,4,5,6,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244674	B230206F22Rik	uc004ebr.1	FTX	56462	0.07	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244677	B230206F22Rik	uc004ebr.1	FTX	56462	0.05	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244676	B230206F22Rik	uc004ebr.1	FTX	56462	0.04	0.10	0.085	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244679	B230206F22Rik	uc004ebr.1	FTX	56462	0.07	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00244678	B230206F22Rik	uc004ebr.1	FTX	56462	0.07	0.10	0.086	0.074	4,5,6,7,	2,4,	0.0	3	mir_host_intron	mir_host_intron
TCONS_00245115	Unannotated	uc004ejq.2	LINC00630	31897	0.00	0.00	NA	NA	NA	NA	0.0	0	intergenic	intergenic