#lnc	lncGeneSymbol	ortholog	orthologGeneSymbol	alignScore	exonID	locusID	indelRate(exon)	indelRate(intron)	lncExonsAligned	orthExonsAligned	spliceConserved	spliceTotal	category(mm9)	category(hg19)
TCONS_00237830	Unannotated	uc003cqw.2	KIF9-AS1	78581	0.03	0.56	0.076	0.000	1,	1,	0.0	0	divergent	intergenic
TCONS_00238265	Unannotated	uc021wur.1	LINC00693	62276	0.44	0.36	0.057	0.076	2,3,4,	3,4,5,	2.5	3	intergenic	intergenic
TCONS_00238264	Unannotated	uc021wur.1	LINC00693	62276	0.46	0.37	0.057	0.076	2,3,4,	3,4,5,	2.5	3	intergenic	intergenic
TCONS_00226469	Unannotated	uc009zba.2	MIR100HG	101238	0.00	0.64	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00226134	Unannotated	uc001qel.3	FLI1-AS1	836270	0.37	0.72	0.038	0.000	1,	2,	0.0	0	divergent	intergenic
TCONS_00238389	AK085969	uc003ckb.3	EIF1B-AS1	23684	0.16	0.54	0.087	0.078	1,	1,	0.0	1	divergent	sno_host
TCONS_00226460	Unannotated	uc009zba.2	MIR100HG	650098	0.00	0.62	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00226461	Unannotated	uc009zba.2	MIR100HG	585040	0.00	0.66	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00226462	Unannotated	uc009zba.2	MIR100HG	40956	0.00	0.64	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00226463	Unannotated	uc009zba.2	MIR100HG	38111	0.00	0.56	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00226464	Unannotated	uc009zba.2	MIR100HG	321577	0.00	0.65	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00226465	Unannotated	uc009zba.2	MIR100HG	282788	0.00	0.67	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00226466	Unannotated	uc009zba.2	MIR100HG	41558	0.00	0.57	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00226467	Unannotated	uc009zba.2	MIR100HG	138070	0.00	0.70	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00233366	Unannotated	uc021qsh.1	DQ600312	313474	0.00	0.00	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00230259	Unannotated	uc003eoc.2	LOC339874	100588	0.00	0.52	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00235987	AK161639	uc003pce.3	AK056584	305853	0.24	0.47	0.064	0.071	4,	4,	0.0	3	intergenic	intergenic
TCONS_00225968	AI414108	uc001qgw.2	MIR4697HG	549989	0.66	0.66	0.055	NA	1,	1,	0.0	0	intergenic	mir_host_exon
TCONS_00228996	Unannotated	uc003pca.1	AK126334	57603	0.00	0.56	NA	0.082	NA	NA	0.0	1	intergenic	intergenic
TCONS_00228997	Unannotated	uc003pca.1	AK126334	37807	0.00	0.60	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00234486	Unannotated	uc001plm.2	BC021736	238785	0.92	0.92	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00226477	2610203C20Rik	uc001pyc.1	BC089451	1040676	0.65	0.69	0.046	0.031	1,2,	1,2,	1.0	1	mir_host_intron	mir_host_intron
TCONS_00226476	2610203C20Rik	uc001pya.3	BC089451	1036963	0.59	0.69	0.046	0.031	1,2,	1,2,	0.5	1	mir_host_intron	mir_host_intron
TCONS_00226475	Unannotated	uc009zba.2	MIR100HG	852875	0.00	0.81	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00226474	Unannotated	uc009zba.2	MIR100HG	807984	0.00	0.78	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00226473	Unannotated	uc009zba.2	MIR100HG	35511	0.00	0.53	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00226472	Unannotated	uc009zba.2	MIR100HG	105929	0.00	0.57	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00226471	Unannotated	uc009zba.2	MIR100HG	507291	0.00	0.68	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00226470	Unannotated	uc009zba.2	MIR100HG	130919	0.00	0.59	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00238390	AK085969	uc003ckb.3	EIF1B-AS1	23684	0.00	0.42	0.143	0.078	2,	1,	0.0	2	intergenic	sno_host
TCONS_00226478	Unannotated	uc010rzr.1	MIR125B1	888542	0.96	0.96	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00233350	Unannotated	uc010scb.1	BC144419	369524	0.03	0.57	0.038	0.000	1,	4,	0.0	0	intergenic	intergenic
TCONS_00233351	Unannotated	uc010scb.1	BC144419	72724	0.06	0.52	0.063	0.000	1,	4,	0.0	0	intergenic	intergenic
TCONS_00233352	Unannotated	uc010scc.1	BC144419	78373	0.00	0.58	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00233353	Unannotated	uc010scc.1	BC144419	111586	0.00	0.65	NA	1.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00233354	AK046026	uc010scc.1	BC144419	111586	0.00	0.70	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00233355	Unannotated	uc010scc.1	BC144419	138499	0.09	0.65	0.040	0.000	1,	1,	0.0	0	intergenic	intergenic
TCONS_00233356	Unannotated	uc001qgd.2	AX747213	81799	0.06	0.60	0.070	0.333	1,	4,	0.0	0	intergenic	divergent
TCONS_00233358	Unannotated	uc001qgd.2	AX747213	43639	0.00	0.76	NA	0.000	NA	NA	0.0	0	intergenic	divergent
TCONS_00229705	Unannotated	uc021xew.1	LOC100289361	143790	0.21	0.22	0.073	NA	1,	1,	0.0	0	divergent	divergent
TCONS_00229148	Unannotated	uc010kbd.2	LOC100506804	321938	0.09	0.41	0.067	0.074	1,	1,	0.5	2	divergent	divergent
TCONS_00229149	Unannotated	uc010kbd.2	LOC100506804	321938	0.03	0.32	0.067	0.074	1,	1,	0.5	2	divergent	divergent
TCONS_00233631	Unannotated	uc001qbb.3	BC036195	171468	0.36	0.55	0.048	0.000	1,	1,	0.0	0	divergent	divergent
TCONS_00238279	AK159035	uc003che.3	BC040563	354392	0.02	0.66	0.047	0.000	1,	1,	0.0	0	divergent	intergenic
TCONS_00235207	Unannotated	uc002aug.3	BC034424	55586	0.00	0.60	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00235288	Unannotated	uc021spl.1	MIR548H4	78782	0.00	0.59	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00235289	Unannotated	uc021spl.1	MIR548H4	57899	0.00	0.59	NA	0.082	NA	NA	0.0	1	mir_host_exon	mir_host_intron
TCONS_00233349	Unannotated	uc001qge.1	AX747213	372698	0.59	0.59	0.076	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00236199	Unannotated	uc021zca.1	Y_RNA	72710	0.00	0.00	NA	0.250	NA	NA	0.0	0	intergenic	intergenic
TCONS_00229142	Unannotated	uc004ajp.3	BC043649	28527	0.53	0.53	0.082	NA	1,	5,	0.0	0	intergenic	intergenic
TCONS_00227788	Unannotated	uc021spl.1	MIR548H4	33652	0.00	0.48	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00225852	Unannotated	uc003teu.3	DQ594967	171300	0.17	0.17	0.077	NA	1,	1,	0.0	0	divergent	divergent
TCONS_00238334	Unannotated	uc003cie.2	ACVR2B-AS1	236594	0.48	0.64	0.076	NA	1,	2,	0.0	0	divergent	intergenic
TCONS_00227787	Unannotated	uc021spl.1	MIR548H4	33652	0.00	0.54	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00233971	Unannotated	uc021qrh.1	MIR4492	1135747	0.00	0.00	0.023	NA	1,	1,	0.0	0	divergent	mir_host_exon
TCONS_00233359	AK015174	uc001qgd.2	AX747213	142582	0.00	0.67	NA	0.000	NA	NA	0.0	0	divergent	divergent
TCONS_00238580	Unannotated	uc003cor.3	LIMD1-AS1	86316	0.49	0.49	0.092	NA	1,	2,	0.0	0	intergenic	intergenic
TCONS_00238581	Unannotated	uc003cor.3	LIMD1-AS1	50369	0.05	0.52	0.083	0.500	1,	1,	0.0	0	divergent	intergenic
TCONS_00235058	Unannotated	uc002ayb.3	UBL7-AS1	231918	0.27	0.58	0.054	1.000	1,	1,	0.0	0	divergent	divergent
TCONS_00227829	Unannotated	uc021spf.1	IQCH-AS1	72180	0.00	0.66	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00227828	Unannotated	uc021spf.1	IQCH-AS1	75437	0.00	0.62	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00227827	Unannotated	uc021spf.1	IQCH-AS1	154555	0.00	0.67	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00227826	Unannotated	uc021spf.1	IQCH-AS1	303541	0.00	0.61	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00227825	Unannotated	uc021spf.1	IQCH-AS1	84018	0.00	0.62	NA	1.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00227824	AK039256	uc021spg.1	IQCH-AS1	87598	0.10	0.63	0.079	NA	1,	1,	0.0	0	divergent	divergent
TCONS_00230023	Unannotated	gene.v2.1_1004.0_chr3_6.151.ADD	Unannotated	200900	0.03	0.57	0.061	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00229250	AK076672	uc031spc.1	DQ582269	124005	0.00	0.00	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00229460	Unannotated	uc021sro.1	U6	112078	0.01	0.01	0.083	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00229464	Unannotated	uc021srn.1	TRNA_Cys	47687	0.00	0.00	NA	NA	NA	NA	0.0	0	intergenic	intergenic
TCONS_00226705	AK017092	uc031qen.1	LOC100131626	147831	0.00	0.57	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00226704	Unannotated	uc031qen.1	LOC100131626	317200	0.00	0.62	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00235635	Unannotated	uc002ags.1	BC035094	953491	0.01	0.70	0.027	0.057	1,	2,	0.0	1	intergenic	intergenic
TCONS_00235636	Unannotated	uc002ags.1	BC035094	985677	0.01	0.70	0.027	0.061	2,	2,	0.5	1	intergenic	intergenic
TCONS_00236461	Unannotated	uc010uni.2	MIR184	348680	0.93	0.94	0.014	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00226865	Unannotated	h1.naive_gene.v2.1_1323.0_chr11	Unannotated	268866	0.00	0.60	NA	0.000	NA	NA	0.0	0	intergenic	sno_host
TCONS_00236746	Unannotated	uc003eta.3	BPESC1	308708	0.00	0.08	NA	0.067	NA	NA	0.0	2	intergenic	intergenic
TCONS_00235244	Unannotated	uc021spp.1	Mir_584	85117	0.00	0.00	NA	0.200	NA	NA	0.0	0	intergenic	intergenic
TCONS_00235246	Unannotated	uc002asi.1	AK097902	215784	0.00	0.29	NA	0.072	NA	NA	0.0	1	intergenic	intergenic
TCONS_00235247	Unannotated	uc002asi.1	AK097902	215784	0.00	0.23	NA	0.072	NA	NA	0.0	1	intergenic	intergenic
TCONS_00235248	Unannotated	uc002asi.1	AK097902	29106	0.57	0.57	0.092	NA	1,	2,	0.0	0	intergenic	intergenic
TCONS_00235253	Unannotated	uc010bij.1	LOC145837	309726	0.03	0.57	0.065	0.083	2,	5,	0.0	1	intergenic	intergenic
TCONS_00235252	Unannotated	uc010bij.1	LOC145837	309649	0.03	0.57	0.065	0.083	2,	5,	0.0	1	intergenic	intergenic
TCONS_00235251	Unannotated	uc010bij.1	LOC145837	306798	0.03	0.58	0.065	0.000	1,	5,	0.0	0	intergenic	intergenic
TCONS_00237829	Unannotated	uc003cqw.2	KIF9-AS1	178201	0.03	0.54	0.088	1.000	1,	2,	0.0	0	intergenic	intergenic
TCONS_00235257	Unannotated	uc010bij.1	LOC145837	310795	0.03	0.60	0.065	0.075	3,	5,	0.0	2	intergenic	intergenic
TCONS_00235256	Unannotated	uc010bij.1	LOC145837	310795	0.02	0.60	0.065	0.077	3,	5,	0.0	2	intergenic	intergenic
TCONS_00235255	Unannotated	uc010bij.1	LOC145837	310795	0.03	0.60	0.065	0.074	4,	5,	0.0	3	intergenic	intergenic
TCONS_00235254	Unannotated	uc010bij.1	LOC145837	310795	0.03	0.60	0.065	0.074	4,	5,	0.0	3	intergenic	intergenic
TCONS_00235259	Unannotated	uc010bij.1	LOC145837	310795	0.03	0.60	0.065	0.074	4,	5,	0.0	3	intergenic	intergenic
TCONS_00235258	Unannotated	uc010bij.1	LOC145837	310795	0.03	0.60	0.065	0.074	4,	5,	0.0	3	intergenic	intergenic
TCONS_00232079	Unannotated	uc011azu.1	MIR138-1	230441	0.90	0.90	0.010	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00230496	Unannotated	uc003cyi.1	AK125500	334164	0.00	0.64	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00234485	Unannotated	uc001pll.3	BC021736	268216	0.96	0.97	0.000	NA	1,	2,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00228630	Unannotated	uc021smx.1	U3	29043	0.02	0.01	0.078	NA	2,	1,	0.0	0	intergenic	sno_host
TCONS_00226459	Unannotated	uc001pyg.3	MIRLET7A2	617044	0.03	0.03	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00226458	Unannotated	uc001pyg.3	MIRLET7A2	617044	0.73	0.74	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00226455	AK084170	uc001pyh.1	MIR100	659600	0.01	0.01	0.000	NA	2,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00226454	Unannotated	uc009zbb.1	MIR100HG	101849	0.00	0.60	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00226457	Unannotated	uc009zba.2	MIR100HG	624509	0.00	0.68	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00226456	Unannotated	uc001pyh.1	MIR100	655034	0.88	0.88	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00226453	Unannotated	uc009zbb.1	MIR100HG	518963	0.00	0.66	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00226452	AK014147	uc009zbb.1	MIR100HG	145894	0.10	0.21	0.063	0.074	2,	3,	1.0	3	intergenic	intergenic
TCONS_00236403	Unannotated	uc010kbs.1	SNORD50B	68166	0.00	0.00	NA	0.000	NA	NA	0.0	0	sno_host	sno_host