#lnc	lncGeneSymbol	ortholog	orthologGeneSymbol	alignScore	exonID	locusID	indelRate(exon)	indelRate(intron)	lncExonsAligned	orthExonsAligned	spliceConserved	spliceTotal	category(mm9)	category(hg19)
TCONS_00156381	Unannotated	uc009voh.3	TMEM51-AS1	14879	0.00	0.59	NA	0.143	NA	NA	0.0	0	intergenic	intergenic
TCONS_00160739	AK021368	h1.oct4_gene.v2.1_4812.0_chr1	MIR3671	302374	0.48	0.13	0.073	NA	2,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00160738	AK021368	h1.oct4_gene.v2.1_4812.0_chr1	MIR3671	302374	0.51	0.13	0.073	NA	2,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00155107	Snhg12	uc001bqn.3	SNHG12	75553	0.31	0.48	0.083	0.068	1,2,3,	1,3,	0.0	2	sno_host	sno_host
TCONS_00155108	Snhg12	uc001bqo.3	SNHG12	75553	0.34	0.48	0.077	0.053	1,2,	1,2,	0.5	1	sno_host	sno_host
TCONS_00155109	Snhg12	uc001bqn.3	SNHG12	75553	0.41	0.54	0.078	0.068	1,2,	1,3,	0.0	1	sno_host	sno_host
TCONS_00155118	Unannotated	uc001bqs.2	SNHG12	73795	0.88	0.89	0.025	NA	1,	1,	0.0	0	sno_host	sno_host
TCONS_00160352	Unannotated	uc003znp.1	AK094196	52081	0.03	0.29	0.082	0.000	1,	1,	0.0	0	intergenic	intergenic
TCONS_00160731	Unannotated	uc001dbw.3	BC035370	62392	0.00	0.61	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00155113	Snhg12	uc001bqo.3	SNHG12	75553	0.45	0.57	0.077	0.066	1,3,	1,2,	0.5	2	sno_host	sno_host
TCONS_00155112	Snhg12	uc001bqn.3	SNHG12	75553	0.36	0.57	0.091	0.068	1,2,3,4,5,	1,3,	0.0	3	sno_host	sno_host
TCONS_00155111	Snhg12	uc001bqn.3	SNHG12	75553	0.56	0.58	0.093	0.068	1,2,3,4,5,	1,3,	0.0	3	sno_host	sno_host
TCONS_00155110	Snhg12	uc001bqn.3	SNHG12	75553	0.38	0.56	0.084	0.068	1,2,3,4,	1,3,	0.0	3	sno_host	sno_host
TCONS_00155117	Unannotated	uc001bqt.2	SNHG12	71619	0.85	0.85	0.015	NA	1,	1,	0.0	0	sno_host	sno_host
TCONS_00155116	Snhg12	uc001bqo.3	SNHG12	75553	0.36	0.57	0.077	0.066	1,2,4,	1,2,	0.5	2	sno_host	sno_host
TCONS_00155115	Snhg12	uc001bqn.3	SNHG12	75553	0.43	0.57	0.077	0.068	1,2,3,	1,3,	0.0	2	sno_host	sno_host
TCONS_00155114	Snhg12	uc001bqo.3	SNHG12	75553	0.41	0.57	0.077	0.079	1,2,	1,2,	0.0	1	sno_host	sno_host
TCONS_00160737	AK021368	h1.oct4_gene.v2.1_4812.0_chr1	MIR3671	302374	0.49	0.13	0.073	NA	2,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00160736	Unannotated	h1.oct4_gene.v2.1_4812.0_chr1	MIR3671	57969	0.53	0.53	0.080	NA	1,	1,	0.0	0	intergenic	mir_host_exon
TCONS_00155119	Unannotated	uc001bqo.3	SNHG12	43641	0.71	0.73	0.081	NA	1,	2,	0.0	0	sno_host	sno_host
TCONS_00160734	Unannotated	uc001dbw.3	BC035370	43029	0.04	0.04	0.084	1.000	2,	1,	0.0	1	intergenic	intergenic
TCONS_00160733	Unannotated	uc001dbw.3	BC035370	43029	0.04	0.04	0.084	1.000	2,	1,	0.0	1	intergenic	intergenic
TCONS_00160732	Unannotated	uc001dbw.3	BC035370	43029	0.03	0.04	0.084	1.000	1,	1,	0.0	0	intergenic	intergenic
TCONS_00157081	AK083203	uc001aka.3	FLJ42875	452973	0.25	0.73	0.072	0.000	1,	2,3,4,5,6,	0.0	0	intergenic	intergenic
TCONS_00157080	AK083203	uc001aka.3	FLJ42875	466792	0.63	0.63	0.069	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00156378	Gm10565	uc009voh.3	TMEM51-AS1	37169	0.04	0.56	0.066	0.078	1,	1,	0.0	2	divergent	intergenic
TCONS_00156379	Gm10565	uc009voh.3	TMEM51-AS1	37169	0.04	0.56	0.066	0.077	1,	1,	0.0	3	divergent	intergenic
TCONS_00156376	Gm10565	uc009voh.3	TMEM51-AS1	37169	0.04	0.56	0.066	0.077	1,	1,	0.0	3	divergent	intergenic
TCONS_00156377	Gm10565	uc009voh.3	TMEM51-AS1	37169	0.06	0.55	0.066	0.079	1,	1,	0.0	4	divergent	intergenic
TCONS_00153493	9130206I24Rik	uc001crl.3	FOXD2-AS1	505386	0.00	0.12	NA	0.000	NA	NA	0.0	0	divergent	intergenic
TCONS_00153494	9130206I24Rik	uc001crl.3	FOXD2-AS1	505386	0.37	0.12	0.051	0.000	2,	1,	0.0	0	divergent	intergenic
TCONS_00153495	9130206I24Rik	uc001crl.3	FOXD2-AS1	505386	0.35	0.12	0.051	0.000	2,	1,	0.0	0	divergent	intergenic
TCONS_00163759	Unannotated	uc001bfm.4	LINC00339	32349	0.02	0.53	0.078	1.000	1,	1,	0.0	0	intergenic	intergenic
TCONS_00155418	1700029M20Rik	uc021oiu.1	DQ597487	81811	0.01	0.01	0.100	NA	2,	1,	0.0	0	intergenic	intergenic
TCONS_00155417	1700029M20Rik	uc021oiu.1	DQ597487	81811	0.01	0.01	0.100	NA	3,	1,	0.0	0	intergenic	intergenic
TCONS_00152374	Unannotated	uc003zpy.3	BC043546	127291	0.00	0.66	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00160740	AK021368	h1.oct4_gene.v2.1_4812.0_chr1	MIR3671	51814	0.38	0.03	0.055	NA	2,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00160741	AK021368	uc001dbx.3	MIR101-1	51814	0.88	0.89	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00157472	Unannotated	uc003hco.3	LOC255130	47966	0.05	0.33	0.066	0.000	1,	1,	0.0	0	intergenic	intergenic
TCONS_00157471	Unannotated	uc003hco.3	LOC255130	49858	0.00	0.58	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00151945	Unannotated	uc002tnj.2	LOC254128	34887	0.44	0.44	0.076	NA	1,	4,	0.0	0	intergenic	sno_host
TCONS_00159373	Unannotated	uc022bma.1	MIR3134	233551	0.00	0.57	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00159372	Unannotated	uc022bma.1	MIR3134	15995	0.00	0.60	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00159371	Unannotated	uc022bma.1	MIR3134	59353	0.00	0.63	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00159370	Unannotated	uc022bma.1	MIR3134	64098	0.00	0.67	NA	0.091	NA	NA	0.0	0	intergenic	intergenic
TCONS_00160904	Unannotated	uc021onx.1	LOC100507634	69551	0.39	0.41	0.080	NA	1,2,	1,	0.0	0	divergent	divergent
TCONS_00160905	Unannotated	uc021onx.1	LOC100507634	69551	0.39	0.33	0.080	0.333	2,	1,	0.0	0	intergenic	divergent
TCONS_00152363	Unannotated	uc022ben.1	CDKN2B-AS1	181610	0.00	0.58	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00152364	Unannotated	uc022ben.1	CDKN2B-AS1	196810	0.00	0.54	NA	1.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00152366	Unannotated	uc022ben.1	CDKN2B-AS1	43773	0.00	0.59	NA	1.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00150078	AK080160	gene.v2.1_1005.0_chr8_92.220.ADD	Unannotated	57545	0.00	0.01	NA	0.500	NA	NA	0.0	1	intergenic	intergenic
TCONS_00150077	AK080160	gene.v2.1_1005.0_chr8_92.220.ADD	Unannotated	57545	0.00	0.00	NA	0.500	NA	NA	0.0	1	intergenic	intergenic
TCONS_00150076	AK080160	gene.v2.1_1005.0_chr8_92.220.ADD	Unannotated	57545	0.00	0.00	NA	0.500	NA	NA	0.0	1	intergenic	intergenic
TCONS_00163671	Unannotated	uc001bhi.3	MDS2	125954	0.00	0.51	NA	0.079	NA	NA	0.0	1	intergenic	intergenic
TCONS_00163670	Unannotated	uc001bhi.3	MDS2	129747	0.00	0.55	NA	0.073	NA	NA	0.0	1	intergenic	intergenic
TCONS_00165410	Unannotated	uc001acl.1	BC033949	123224	0.05	0.10	0.075	NA	1,	4,	0.0	0	intergenic	intergenic
TCONS_00151955	AK042990	uc004amd.3	BC036431	49752	0.03	0.48	0.082	NA	1,	1,	0.0	0	divergent	divergent
TCONS_00151954	AK042990	uc004amd.3	BC036431	49141	0.05	0.46	0.082	NA	1,	1,	0.0	0	divergent	divergent
TCONS_00150002	AK007255	uc022ayf.1	MIR378D2	464064	0.00	0.00	NA	0.333	NA	NA	0.0	0	divergent	mir_host_exon
TCONS_00150003	AK007255	uc022ayf.1	MIR378D2	464064	0.00	0.00	NA	0.333	NA	NA	0.0	0	divergent	mir_host_exon
TCONS_00150001	AK007255	uc022ayf.1	MIR378D2	464064	0.00	0.00	NA	0.333	NA	NA	0.0	0	divergent	mir_host_exon
TCONS_00150004	AK007255	uc022ayf.1	MIR378D2	464064	0.00	0.00	NA	0.333	NA	NA	0.0	0	divergent	mir_host_exon
TCONS_00150238	Unannotated	uc021zda.1	MIR548H3	84441	0.00	0.65	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00163280	Unannotated	uc021ojq.1	BC016143	110400	0.00	0.53	NA	0.000	NA	NA	0.0	0	mir_host_exon	intergenic
TCONS_00158026	4930528A17Rik	uc003ppu.3	DQ599242	117072	0.62	0.62	0.062	NA	1,	1,	0.0	0	intergenic	divergent
TCONS_00158027	4930528A17Rik	uc003ppu.3	DQ599242	117072	0.62	0.62	0.062	NA	1,	1,	0.0	0	intergenic	divergent
TCONS_00150914	Unannotated	uc021ycv.1	MIR1244-2	85064	0.03	0.03	0.012	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00150915	Unannotated	uc021ycv.1	MIR1244-2	85064	0.03	0.03	0.012	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00164938	Unannotated	uc021oft.1	ENO1-AS1	74847	0.21	0.61	0.087	NA	1,	1,2,	0.0	0	divergent	divergent
TCONS_00150284	Unannotated	uc003pod.3	BC037927	100734	0.00	0.17	NA	0.080	NA	NA	0.0	3	mir_host_intron	intergenic
TCONS_00152735	Unannotated	uc021ook.1	MIR3671	8728	0.00	0.00	NA	NA	NA	NA	0.0	0	intergenic	mir_host_exon
TCONS_00164937	Unannotated	uc021oft.1	ENO1-AS1	69175	0.16	0.29	0.062	NA	1,	2,	0.0	0	intergenic	divergent
TCONS_00156332	B330016D10Rik	uc001axj.2	FLJ37453	31725	0.19	0.24	0.078	0.000	1,	2,	0.0	0	intergenic	divergent
TCONS_00156333	B330016D10Rik	uc001axj.2	FLJ37453	29005	0.48	0.50	0.078	0.000	1,	2,	0.0	0	intergenic	divergent
TCONS_00158039	Unannotated	uc003ppd.1	AK091365	607873	0.00	0.63	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00158038	Unannotated	uc003ppd.1	AK091365	612208	0.00	0.72	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00163756	Unannotated	uc001bfn.4	LINC00339	50785	0.35	0.45	0.057	NA	1,	2,	0.0	0	intergenic	intergenic
TCONS_00154028	Unannotated	uc021omj.1	U6	137916	0.00	0.00	NA	NA	NA	NA	0.0	0	intergenic	intergenic
TCONS_00158623	Rmrp	uc003zxh.2	RMRP	285410	0.81	0.81	0.029	1.000	1,	1,	0.0	0	divergent	divergent
TCONS_00158037	Unannotated	uc003ppd.1	AK091365	573944	0.00	0.63	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00158036	Unannotated	uc003ppd.1	AK091365	533907	0.00	0.54	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00158035	Unannotated	uc003ppd.1	AK091365	134779	0.00	0.68	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00158034	Unannotated	uc003ppd.1	AK091365	68281	0.00	0.67	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00163054	Unannotated	uc009vtj.1	RNU11	50993	0.95	0.95	0.000	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00163053	Unannotated	uc009vtj.1	RNU11	48531	0.13	0.13	0.000	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00152965	Unannotated	uc001cyn.3	BC048114	208214	0.21	0.54	0.085	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00151996	Unannotated	uc004cox.4	MTND5	121064	0.00	0.00	NA	NA	NA	NA	0.0	0	intergenic	intergenic
TCONS_00159030	Unannotated	uc004bad.1	AK057451	86473	0.00	0.53	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00159031	Unannotated	uc004bad.1	AK057451	83062	0.00	0.51	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00159032	Unannotated	uc004bad.1	AK057451	918751	0.00	0.65	NA	0.500	NA	NA	0.0	0	intergenic	intergenic
TCONS_00159033	Unannotated	uc004bad.1	AK057451	1055974	0.02	0.70	0.029	0.000	1,	1,	0.0	0	intergenic	intergenic
TCONS_00155120	Snhg12	uc001bqq.1	SNORD99	62872	0.89	0.91	0.000	NA	1,	1,	0.0	0	sno_host	sno_host
TCONS_00161802	Unannotated	uc001cil.3	SLC2A1-AS1	80886	0.00	0.60	NA	1.000	NA	NA	0.0	0	intergenic	divergent
TCONS_00161803	Unannotated	uc001cil.3	SLC2A1-AS1	197766	0.39	0.68	0.047	1.000	1,	1,	0.0	0	divergent	divergent
TCONS_00160432	Unannotated	uc003zpe.2	MIR31HG	96816	0.01	0.54	0.091	0.000	1,	1,	0.0	0	intergenic	sno_host
TCONS_00158040	Unannotated	uc003ppd.1	AK091365	607413	0.00	0.69	NA	0.200	NA	NA	0.0	0	intergenic	intergenic
TCONS_00158041	Unannotated	uc003ppd.1	AK091365	60889	0.00	0.58	NA	0.079	NA	NA	0.0	1	intergenic	intergenic
TCONS_00165109	AK131834	uc010nzo.2	LOC100133612	152751	0.00	0.56	NA	0.074	NA	NA	0.0	1	intergenic	divergent
TCONS_00159023	Unannotated	uc004bac.1	NAMA	53832	0.44	0.56	0.096	0.000	1,	2,	0.0	0	intergenic	intergenic
TCONS_00152496	Unannotated	uc001czn.3	BC042048	91455	0.00	0.66	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00159029	Unannotated	uc004bad.1	AK057451	865053	0.01	0.58	0.046	0.000	1,	2,	0.0	0	intergenic	intergenic
TCONS_00159028	Unannotated	uc004bad.1	AK057451	293473	0.00	0.61	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00160427	Unannotated	uc011lnj.2	MIR31	196290	0.01	0.00	0.000	NA	2,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00160426	Unannotated	uc011lnj.2	MIR31	196290	0.01	0.00	0.000	NA	2,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00160429	Unannotated	uc011lnj.2	MIR31	196290	0.65	0.66	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00160428	Unannotated	uc011lnj.2	MIR31	196290	0.01	0.00	0.000	NA	3,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00160430	Unannotated	uc003zpe.2	MIR31HG	138594	0.00	0.59	NA	0.000	NA	NA	0.0	0	intergenic	sno_host
TCONS_00160431	Unannotated	uc003zpe.2	MIR31HG	387264	0.00	0.58	0.033	0.052	1,	1,	0.0	1	intergenic	sno_host