#lnc	lncGeneSymbol	ortholog	orthologGeneSymbol	alignScore	exonID	locusID	indelRate(exon)	indelRate(intron)	lncExonsAligned	orthExonsAligned	spliceConserved	spliceTotal	category(mm9)	category(hg19)
TCONS_00137764	Unannotated	uc001zwf.1	AK021664	34745	0.00	0.03	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00148737	Unannotated	uc003hws.1	AK093356	261719	0.00	0.46	NA	0.000	NA	NA	0.0	0	intergenic	divergent
TCONS_00148739	4930539J05Rik	uc003hws.1	AK093356	281029	0.00	0.51	NA	0.066	NA	NA	0.0	1	divergent	divergent
TCONS_00148738	Unannotated	uc003hws.1	AK093356	274693	0.00	0.57	NA	1.000	NA	NA	0.0	0	intergenic	divergent
TCONS_00139136	AK016388	uc011bny.1	CLRN1-AS1	152350	0.00	0.03	NA	0.075	NA	NA	0.0	4	divergent	mir_host_intron
TCONS_00138335	Unannotated	uc031scm.1	SOX2-OT	38203	0.00	0.69	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00140607	Unannotated	uc021pac.1	MIR190B	223619	0.88	0.88	0.013	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00147690	Unannotated	uc001dwo.1	SCARNA2	50370	0.89	0.90	0.032	NA	1,	1,	0.0	0	sno_host	sno_host
TCONS_00142295	AK040960	uc001dqu.3	BC030750	31006	0.00	0.48	NA	0.080	NA	NA	0.0	3	intergenic	mir_host_intron
TCONS_00145969	Unannotated	uc021pas.1	MIR92B	870647	0.93	0.94	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00147837	A930005H10Rik	h1.naive_gene.v2.1_4026.0_chr1	BX538249	239169	0.12	0.54	0.064	0.057	1,	1,	0.0	1	divergent	divergent
TCONS_00147836	A930005H10Rik	h1.naive_gene.v2.1_4026.0_chr1	BX538249	239169	0.12	0.56	0.064	0.056	1,	1,	0.0	2	divergent	divergent
TCONS_00147835	A930005H10Rik	h1.naive_gene.v2.1_4026.0_chr1	BX538249	239169	0.16	0.57	0.064	0.057	1,	1,	0.0	2	divergent	divergent
TCONS_00139352	Unannotated	uc021xgi.1	LINC00881	17808	0.01	0.20	0.099	0.073	1,	1,	0.0	2	intergenic	intergenic
TCONS_00142288	AK040960	uc001dqu.3	BC030750	107807	0.02	0.34	0.071	NA	3,	1,	0.0	2	intergenic	mir_host_intron
TCONS_00147839	A930005H10Rik	h1.naive_gene.v2.1_4026.0_chr1	BX538249	239169	0.22	0.57	0.064	0.057	1,	1,	0.0	1	divergent	divergent
TCONS_00147838	A930005H10Rik	uc001dua.3	BX538249	239169	0.14	0.57	0.073	0.057	1,	1,	0.0	2	divergent	divergent
TCONS_00145000	Unannotated	uc003fbc.3	LINC00880	14420	0.22	0.59	0.080	NA	1,	4,	0.0	0	intergenic	intergenic
TCONS_00142186	Unannotated	uc021oqk.1	MIR137HG	978628	0.99	1.00	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00142187	AK076759	uc009wdx.3	MIR137HG	1028564	0.02	0.01	0.000	0.027	1,	1,	0.5	1	mir_host_exon	mir_host_exon
TCONS_00142189	Unannotated	uc001drx.2	MIR137HG	896092	0.00	0.63	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_exon
TCONS_00140973	Unannotated	uc001exo.3	BC021024	568285	0.07	0.13	0.056	0.064	1,	1,	0.0	1	divergent	divergent
TCONS_00140972	Unannotated	uc001exo.3	BC021024	568285	0.10	0.23	0.043	0.059	1,2,	1,2,	0.0	1	divergent	divergent
TCONS_00141809	Unannotated	uc001ede.1	BC037540	52410	0.39	0.55	0.078	0.000	1,	3,	0.0	0	intergenic	divergent
TCONS_00147248	Unannotated	uc001ede.1	BC037540	93346	0.00	0.00	NA	NA	NA	NA	0.0	0	intergenic	divergent
TCONS_00142412	Unannotated	uc021xre.1	AK309988	59538	0.00	0.56	NA	0.000	NA	NA	0.0	0	intergenic	divergent
TCONS_00142411	Unannotated	uc021xre.1	AK309988	58256	0.00	0.62	NA	0.000	NA	NA	0.0	0	divergent	divergent
TCONS_00145085	Unannotated	uc021xgu.1	U7	23417	0.00	0.00	NA	NA	NA	NA	0.0	0	intergenic	intergenic
TCONS_00143620	AK142074	uc001dgp.1	AK055631	582303	0.58	0.41	0.052	0.062	2,3,	1,2,	1.0	1	divergent	intergenic
TCONS_00148345	Snora24	uc003iby.3	SNHG8	106940	0.40	0.02	0.082	0.058	1,2,	1,2,	1.5	2	sno_host	sno_host
TCONS_00148300	AK016661	uc021xrg.1	LOC645513	212952	0.16	0.56	0.075	0.069	2,3,	6,7,	0.5	5	intergenic	intergenic
TCONS_00148304	AK016661	uc021xrg.1	LOC645513	35160	0.00	0.23	NA	0.076	NA	NA	0.0	5	intergenic	intergenic
TCONS_00147249	Unannotated	uc001edc.1	BC047723	67592	0.00	0.62	NA	0.000	NA	NA	0.0	0	intergenic	divergent
TCONS_00147840	A930005H10Rik	h1.naive_gene.v2.1_4026.0_chr1	BX538249	237469	0.13	0.60	0.067	0.000	1,	1,	0.0	0	divergent	divergent
TCONS_00142199	Unannotated	uc001drx.2	MIR137HG	187270	0.03	0.65	0.020	0.000	1,	4,	0.0	0	intergenic	mir_host_exon
TCONS_00146684	Terc	uc003ffr.1	TERC	20878	0.10	0.10	0.060	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00142195	AK076759	uc001drx.2	MIR137HG	646177	0.00	0.66	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_exon
TCONS_00142194	Unannotated	uc001drx.2	MIR137HG	579203	0.00	0.58	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_exon
TCONS_00142193	Unannotated	uc001drx.2	MIR137HG	672884	0.00	0.61	NA	1.000	NA	NA	0.0	0	intergenic	mir_host_exon
TCONS_00142192	Unannotated	uc001drx.2	MIR137HG	969724	0.00	0.61	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_exon
TCONS_00142191	Unannotated	uc001drx.2	MIR137HG	927211	0.00	0.65	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_exon
TCONS_00142190	Unannotated	uc001drx.2	MIR137HG	879936	0.00	0.63	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_exon
TCONS_00141150	Unannotated	h1.oct4_gene.v2.1_1671.0_chr1	Unannotated	54501	0.36	0.36	0.068	NA	1,	3,	0.0	0	intergenic	intergenic
TCONS_00144422	Unannotated	uc003iet.3	BC045668	31939	0.00	0.09	NA	NA	NA	NA	0.0	0	intergenic	intergenic
TCONS_00141859	AK138691	uc001ebj.2	LOC100129269	153453	0.10	0.69	0.013	0.054	3,	4,	0.0	2	intergenic	intergenic
TCONS_00143968	Unannotated	uc003xvh.4	LOC401463	830572	0.00	0.80	NA	0.000	NA	NA	0.0	0	divergent	intergenic
TCONS_00141149	Unannotated	h1.oct4_gene.v2.1_1671.0_chr1	Unannotated	50783	0.47	0.47	0.068	NA	1,	2,	0.0	0	intergenic	intergenic
TCONS_00144998	AK144610	uc003fbc.3	LINC00880	170553	0.08	0.50	0.033	0.077	3,	4,	0.0	2	intergenic	intergenic
TCONS_00141808	Unannotated	uc001ede.1	BC037540	38830	0.00	0.62	NA	0.065	NA	NA	0.0	1	intergenic	divergent
TCONS_00144559	AK012035	uc003igy.3	BC040219	278943	0.17	0.31	0.078	0.077	1,5,6,	1,9,	0.0	8	divergent	divergent
TCONS_00149578	Unannotated	uc001dec.2	GNG12-AS1	116803	0.00	-0.00	NA	NA	NA	NA	0.0	0	intergenic	mir_host_intron
TCONS_00148719	Unannotated	uc003hxh.1	AK094561	97730	0.00	0.62	NA	0.060	NA	NA	0.0	1	intergenic	intergenic
TCONS_00138012	Rprl2	uc001vxa.1	RPPH1	18322	0.84	0.84	0.033	NA	1,	1,	0.0	0	intergenic	divergent
TCONS_00139675	Unannotated	uc003ine.3	BC039551	149796	0.06	0.47	0.067	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00139676	Unannotated	uc003ine.3	BC039551	149796	0.58	0.58	0.056	NA	1,	2,	0.0	0	intergenic	intergenic
TCONS_00139078	Unannotated	uc031qld.1	LINC00457	98681	0.00	0.56	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00142344	Unannotated	uc003hum.2	LOC100507053	41731	0.00	0.83	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00144999	AK144610	uc003fbc.3	LINC00880	170553	0.07	0.50	0.033	0.076	3,	4,	0.0	2	intergenic	intergenic
TCONS_00146685	Terc	h1.naive_gene.v2.1_1653.0_chr3	TERC	20878	0.75	0.75	0.054	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00144995	Unannotated	uc003fbc.3	LINC00880	168736	0.25	0.36	0.037	NA	1,	4,	0.0	0	intergenic	intergenic
TCONS_00144997	AK144610	uc003fbc.3	LINC00880	168736	0.25	0.47	0.033	0.078	3,	4,	0.0	2	intergenic	intergenic
TCONS_00144996	AK144610	uc003fbc.3	LINC00880	168736	0.24	0.45	0.033	0.077	3,	4,	0.0	2	intergenic	intergenic
TCONS_00145373	Unannotated	uc003iol.3	DQ266889	95925	0.03	0.62	0.086	0.000	1,	2,	0.0	0	intergenic	intergenic
TCONS_00145371	Unannotated	uc003iol.3	DQ266889	95925	0.00	0.58	NA	0.070	NA	NA	0.0	2	intergenic	intergenic
TCONS_00148270	Unannotated	uc021oqa.1	MIR760	133820	0.66	0.66	0.000	NA	1,	1,	0.0	0	mir_host_exon	mir_host_exon
TCONS_00148560	Unannotated	h1.naive_gene.v2.1_1259.0_chr15	OIP5-AS1	34193	0.82	0.83	0.014	NA	1,	4,	0.0	0	intergenic	intergenic
TCONS_00143748	AK012506	uc003yas.4	ZFHX4-AS1	1691954	0.16	0.64	0.019	0.056	1,	1,	0.5	2	intergenic	intergenic
TCONS_00148348	Snora24	h1.ips_gene.v2.1_2037.0_chr4	SNHG8	106940	0.22	0.33	0.086	0.058	1,2,3,	1,2,3,	1.5	2	sno_host	sno_host
TCONS_00148349	Snora24	h1.ips_gene.v2.1_2037.0_chr4	SNHG8	106940	0.22	0.33	0.088	0.059	1,2,3,	1,2,3,	1.5	2	sno_host	sno_host
TCONS_00140774	Unannotated	uc021ozx.1	Mir_584	205385	0.15	0.00	0.019	0.000	2,	1,	0.0	0	intergenic	intergenic
TCONS_00142294	AK040960	uc001dqu.3	BC030750	107807	0.02	0.37	0.071	0.031	2,	1,	0.0	2	intergenic	mir_host_intron
TCONS_00143069	AK035466	uc021opn.1	AK123834	26519	0.00	0.29	0.073	NA	1,	1,	0.0	0	divergent	intergenic
TCONS_00148346	Snora24	h1.ips_gene.v2.1_2037.0_chr4	SNHG8	106940	0.22	0.33	0.087	0.058	1,2,3,	1,2,3,	1.5	2	sno_host	sno_host
TCONS_00148347	Snora24	h1.ips_gene.v2.1_2037.0_chr4	SNHG8	106940	0.19	0.33	0.087	0.089	1,2,	1,2,3,	1.0	1	sno_host	sno_host
TCONS_00142290	AK040960	uc001dqu.3	BC030750	107807	0.02	0.37	0.071	0.047	2,	1,	0.0	3	intergenic	mir_host_intron
TCONS_00142291	AK040960	uc001dqu.3	BC030750	107807	0.02	0.37	0.071	0.060	2,	1,	0.0	2	intergenic	mir_host_intron
TCONS_00142292	AK040960	uc001dqu.3	BC030750	107807	0.02	0.37	0.071	0.060	2,	1,	0.0	2	intergenic	mir_host_intron
TCONS_00142293	AK040960	uc001dqu.3	BC030750	107807	0.02	0.37	0.071	0.031	2,	1,	0.0	2	intergenic	mir_host_intron
TCONS_00149512	Unannotated	uc001dfr.3	ZRANB2-AS1	348237	0.00	0.62	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00149510	AK076987	uc001dfu.2	ZRANB2-AS2	322231	0.00	0.62	NA	0.062	NA	NA	0.0	2	divergent	mir_host_intron
TCONS_00137749	AK016002	uc031tbo.1	MIR5708	49248	0.00	0.01	NA	0.000	NA	NA	0.0	0	intergenic	mir_host_exon
TCONS_00142202	Unannotated	uc001drx.2	MIR137HG	58091	0.61	0.61	0.086	NA	1,	5,	0.0	0	intergenic	mir_host_exon
TCONS_00142201	Unannotated	uc001drx.2	MIR137HG	89979	0.26	0.61	0.090	0.000	1,	5,	0.0	0	intergenic	mir_host_exon
TCONS_00142200	Unannotated	uc001drx.2	MIR137HG	66254	0.04	0.54	0.069	1.000	1,	4,	0.0	0	intergenic	mir_host_exon
TCONS_00140773	Unannotated	uc021ozx.1	Mir_584	205385	0.11	0.00	0.019	0.000	2,	1,	0.0	0	intergenic	intergenic
TCONS_00142440	Unannotated	uc021ycv.1	MIR1244-2	97664	0.19	0.19	0.012	NA	1,	1,	0.0	0	intergenic	intergenic
TCONS_00143072	Unannotated	uc021opn.1	AK123834	76836	0.00	0.61	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00143070	AK035466	uc021opn.1	AK123834	246626	0.00	0.57	NA	0.068	NA	NA	0.0	1	intergenic	intergenic
TCONS_00139094	Unannotated	uc021xfo.1	LOC646903	352535	0.00	0.00	NA	NA	NA	NA	0.0	0	intergenic	divergent
TCONS_00142289	AK040960	uc001dqu.3	BC030750	107807	0.02	0.36	0.067	0.047	2,	1,	0.0	3	intergenic	mir_host_intron
TCONS_00145317	Unannotated	uc003ipu.1	AK096792	318403	0.00	0.60	NA	0.000	NA	NA	0.0	0	intergenic	divergent
TCONS_00137900	2610100L16Rik	uc003xvf.3	MIR124-2	848193	0.00	0.01	NA	0.000	NA	NA	0.0	0	mir_host_intron	mir_host_exon
TCONS_00147247	Unannotated	uc001ede.1	BC037540	89669	0.00	0.00	NA	NA	NA	NA	0.0	0	intergenic	divergent
TCONS_00148353	Snora24	h1.ips_gene.v2.1_2037.0_chr4	SNHG8	106940	0.25	0.34	0.087	0.057	1,2,3,	1,2,3,	1.5	2	sno_host	sno_host
TCONS_00148352	Snora24	h1.ips_gene.v2.1_2037.0_chr4	SNHG8	106940	0.25	0.34	0.087	0.058	1,2,3,	1,2,3,	2.0	2	sno_host	sno_host
TCONS_00148351	Snora24	h1.ips_gene.v2.1_2037.0_chr4	SNHG8	106940	0.24	0.34	0.090	0.058	1,2,3,	1,2,3,	1.5	2	sno_host	sno_host
TCONS_00148350	Snora24	h1.ips_gene.v2.1_2037.0_chr4	SNHG8	106940	0.24	0.34	0.090	0.059	1,2,3,	1,2,3,	1.5	2	sno_host	sno_host
TCONS_00148354	Snora24	uc003iby.3	SNHG8	106940	0.25	0.63	0.085	NA	1,	1,2,3,	0.0	0	sno_host	sno_host
TCONS_00139349	Unannotated	uc021xgi.1	LINC00881	17808	0.01	0.23	0.099	0.074	1,	1,	0.0	2	intergenic	intergenic
TCONS_00139355	Unannotated	uc021xgi.1	LINC00881	204825	0.04	0.27	0.097	0.077	3,	3,	0.0	2	intergenic	intergenic
TCONS_00139354	Unannotated	uc021xgi.1	LINC00881	101069	0.02	0.21	0.020	0.073	3,	2,	0.5	2	intergenic	intergenic
TCONS_00138635	Unannotated	uc011cgn.1	LOC285419	77468	0.00	0.34	NA	0.080	NA	NA	0.0	3	intergenic	intergenic
TCONS_00144827	Unannotated	uc003eye.2	BC039424	93185	0.07	0.48	0.066	0.000	1,	1,	0.0	0	divergent	intergenic
TCONS_00144826	Unannotated	uc003eye.2	BC039424	93185	0.18	0.48	0.066	0.072	1,	1,	0.0	1	divergent	intergenic
TCONS_00145020	Unannotated	uc003fbw.1	AK097794	292847	0.00	0.60	NA	0.000	NA	NA	0.0	0	intergenic	divergent
TCONS_00147252	Unannotated	h1.oct4_gene.v2.1_2544.0_chr1	BC047723	50611	0.12	0.47	0.077	NA	1,	3,4,	0.0	0	divergent	divergent
TCONS_00147251	Unannotated	uc001edc.1	BC047723	58357	0.00	0.64	NA	0.000	NA	NA	0.0	0	intergenic	divergent
TCONS_00147250	Unannotated	uc001edc.1	BC047723	29606	0.00	0.64	NA	0.000	NA	NA	0.0	0	intergenic	divergent
TCONS_00147689	Unannotated	h1.ips_gene.v2.1_7515.0_chr1	SCARNA2	50370	0.21	0.21	0.042	NA	1,	1,	0.0	0	sno_host	sno_host
TCONS_00146302	Unannotated	uc010pdr.2	LOC100132111	172246	0.05	0.53	0.084	NA	1,	3,4,	0.0	0	intergenic	intergenic
TCONS_00142198	Unannotated	uc001drx.2	MIR137HG	275811	0.00	0.60	0.089	0.000	1,	4,	0.0	0	intergenic	mir_host_exon
TCONS_00139353	Unannotated	uc021xgi.1	LINC00881	289245	0.02	0.27	0.081	0.075	1,5,	1,3,	0.0	2	intergenic	intergenic
TCONS_00142673	Unannotated	uc003hym.1	AK123292	82378	0.00	0.53	NA	0.000	NA	NA	0.0	0	divergent	intergenic
TCONS_00139351	Unannotated	uc021xgi.1	LINC00881	289245	0.02	0.27	0.081	0.075	1,5,	1,3,	0.0	2	intergenic	intergenic
TCONS_00139350	Unannotated	uc021xgi.1	LINC00881	17808	0.01	0.20	0.099	0.074	1,	1,	0.0	2	intergenic	intergenic
TCONS_00139357	Unannotated	uc021xgi.1	LINC00881	101069	0.03	0.17	0.020	0.073	3,	2,	0.5	2	intergenic	intergenic
TCONS_00139356	Unannotated	uc021xgi.1	LINC00881	204825	0.05	0.20	0.097	0.077	3,	3,	0.0	2	intergenic	intergenic
TCONS_00142674	Unannotated	uc003hym.1	AK123292	52110	0.00	0.59	NA	0.000	NA	NA	0.0	0	intergenic	intergenic
TCONS_00142282	Unannotated	uc021oqc.2	LOC729970	50185	0.00	0.00	NA	NA	NA	NA	0.0	1	intergenic	intergenic
TCONS_00139359	Unannotated	uc021xgi.1	LINC00881	154879	0.09	0.07	0.090	0.000	1,	3,	0.0	1	intergenic	intergenic
TCONS_00139358	Unannotated	uc021xgi.1	LINC00881	26111	0.27	0.42	0.090	0.000	1,	3,	0.0	0	intergenic	intergenic
TCONS_00141860	AK138691	uc021ors.1	LOC100129269	174823	0.10	0.60	0.077	0.084	1,	2,3,	0.0	1	intergenic	intergenic
TCONS_00144291	Unannotated	uc003fjj.3	BC032034	44366	0.02	0.34	0.093	0.080	4,	2,	0.0	2	intergenic	intergenic